Rorug04G0378600

G patch domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002748
Physical Location & Seq
Reverse (-)
54919164 .. 54922124
2961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0378600.1

Sequence Viewer

Length: 1554 bp
ATGGATGGAAAAGATGATCTCAAGGACTCGGAATATGGCCAGGAGGTGAAGGATGAGAAGTCTTACATTAATGGGAAGCTCAAGTACTGGAAATATGCCGGAGGAATGAAGGCTGAACTCTTGAAGGATTTGATGAACGGGACTAATATCAAAGCCGAGAAGTACTTGAAAGGGTTGGTGATAGCTAGGACCCGACTCGCCCGGTTGAAATTGTGGGCGGTTCGACTGACGAAAGTGCTGCTACTCTTGGCTATTGCATTGCAGGTCAAGGGTTTGGGAGATACCTTGTTGCCAAAGATATCCAAAAGCTCTCTTCCCCCTGAAAGGATTTACGAAAACAATGGATATTTGATGGTTTCATCCAATGGAGGACTAAATCAGATGCGATCTGGCATATGTGACATGGTAGCAATTGCAAGATATTTAAATGTCACCCTTATAGTTCCTGAGTTGGATAACACCTCCTTCTGGAATGACCGCAGTCAATTTGAAGACATATTCGATGTGGATTATTTCATTACCTCATTGAGAGATGAGGTCAAAATTTTAAAAGAACTACCTCCTAAGCAGAAGAAGAAAGTGGAATTAGAATCCCTTTATTCCATGCCACCAATTAGTTGGTCCAATATGACTTATTACTATAACACGATTCTTCCTCGCATACAAACATACGAAGTTGTGCACTTCACGAAAACAGATGCTAGGCTTGCCAACAATGGCATCCCTGAAGAGGTTCAGAAGCTTCGCTGCCGTGCTAATTACCAAGCTCTGAAATTCGCTCCTCCGATTGAGGCATTAGGCAAGAAAATTGTTAACATCCTCCGTGAAAGAGGCCCTTTCATGGTCCTTCATCTTCGGTACGAAATGGACATGGTGGCTTTTTCTGGTTGCACTGAGGGTTGCAATCGAGAAGAGATTGAAGAGACAACGAAAATGAGATATGCTTATCCATGGTGGAAAGAAAAGGAGATTGATTCAGAGAAGAAAAGGAAGGATGGACTTTGCCCTTTAACACCTGAAGAAACTGCTCTAGCATTAAGAGCACTAGGCATTGATCGTGATATTCAAGTCTATATTGCTGCTGGAGATATATACAAGGCAGAGAGGAGAATGGCACCTCTCAAAGAAGCTTTTCCAAATTTGGTGAGAAAGGAGACGTTGGTTGATGCATCAGATCTTCTCCCTCTCCAAAACCACTCGAACCAAATGGCGGCTCTGGACTACTACGTCTCGATAGAAAGTGACATCTTTGTCCCAACATATGGAGGAAACATGGCAAAAGTAGTTGAAGGCCATAGAAGATACTTGGGATTCAAGAAAACCATTCTTCTAGACAGAAAGGCTCTGGTGGATCTGATAGACCAGTACAACAATGGAACCCTGAGCTGGAGCGAGTTCGCACTCGGAGTGAATACTGTTCATGCAGAGCGTATGGGACAACCAACTAGAAGAGTGGAGGTTCCAGGAAAACCTAAACTAGAGGACTACTTCTATACAAACCCAACTGAGTGTTTGTCACTGCCAGCTGAAGATGATGATCAACTATTACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch

Protein Analysis

517

Amino Acids

59.25

Weight (kDa)

7.52

Isoelectric Point (pI)

37.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 116 - 436 2.1e-103 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1226, 1250
Acc36I ACCTGC 1 cut(s) 253
AccB1I GGYRCC 1 cut(s) 1114
AccB7I CCANNNNNTGG 1 cut(s) 1262
AciI CCGC 3 cut(s) 218, 478, 1211
AclWI GGATC 1 cut(s) 1359
AcoI YGGCCR 1 cut(s) 37
AcsI RAATTY 3 cut(s) 543, 773, 1138
AcuI CTGAAG 3 cut(s) 747, 1038, 1548
AfaI GTAC 4 cut(s) 86, 164, 860, 1367
AfiI CCNNNNNNNGG 7 cut(s) 324, 468, 730, 841, 1210, 1262, 1386
AgsI TTSAA 8 cut(s) 124, 169, 208, 491, 920, 1067, 1289, 1315
AjnI CCWGG 2 cut(s) 39, 1462
AluBI AGCT 8 cut(s) 79, 185, 309, 742, 767, 1130, 1386, 1526
AluI AGCT 8 cut(s) 79, 185, 309, 742, 767, 1130, 1386, 1526
Alw21I GWGCWC 2 cut(s) 684, 1045
Alw26I GTCTC 3 cut(s) 917, 1148, 1234
Alw44I GTGCAC 1 cut(s) 680
AlwI GGATC 1 cut(s) 1359
AoxI GGCC 3 cut(s) 37, 832, 1291
ApaLI GTGCAC 1 cut(s) 680
ApeKI GCWGC 3 cut(s) 238, 747, 1079
ApoI RAATTY 3 cut(s) 543, 773, 1138
AseI ATTAAT 1 cut(s) 69
Asp700I GAANNNNTTC 2 cut(s) 732, 1131
AspS9I GGNCC 4 cut(s) 189, 621, 833, 844
AsuC2I CCSGG 1 cut(s) 202
AsuHPI GGTGA 4 cut(s) 58, 190, 424, 1156
AvaII GGWCC 3 cut(s) 189, 621, 844
BaeGI GKGCMC 1 cut(s) 684
BalI TGGCCA 1 cut(s) 39
BanI GGYRCC 1 cut(s) 1114
BarI GAAGNNNNNNTAC 2 cut(s) 68, 100
BbsI GAAGAC 1 cut(s) 498
Bbv12I GWGCWC 2 cut(s) 684, 1045
BbvI GCAGC 3 cut(s) 225, 734, 1066
BccI CCATC 2 cut(s) 346, 989
BceAI ACGGC 1 cut(s) 735
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BciT130I CCWGG 2 cut(s) 41, 1464
BclI TGATCA 1 cut(s) 1537
BcnI CCSGG 1 cut(s) 202
BcoDI GTCTC 3 cut(s) 917, 1148, 1234
BfaI CTAG 7 cut(s) 186, 702, 1031, 1046, 1331, 1446, 1478
BfuAI ACCTGC 1 cut(s) 253
BglII AGATCT 1 cut(s) 1174
BisI GCNGC 4 cut(s) 239, 748, 1080, 1212
BlsI GCNGC 4 cut(s) 240, 749, 1081, 1213
BmcAI AGTACT 2 cut(s) 86, 164
Bme1390I CCNGG 3 cut(s) 41, 202, 1464
Bme18I GGWCC 3 cut(s) 189, 621, 844
BmgT120I GGNCC 4 cut(s) 189, 621, 833, 844
BmiI GGNNCC 4 cut(s) 191, 1116, 1378, 1461
BmrFI CCNGG 3 cut(s) 41, 202, 1464
BmsI GCATC 5 cut(s) 372, 688, 729, 1156, 1178
BoxI GACNNNNGTC 1 cut(s) 480
BpiI GAAGAC 1 cut(s) 498
BpmI CTGGAG 2 cut(s) 1104, 1408
Bpu10I CCTNAGC 2 cut(s) 564, 1382
BpuEI CTTGAG 2 cut(s) 5, 65
BpuMI CCSGG 1 cut(s) 202
BsaBI GATNNNNATC 1 cut(s) 1536
BsaJI CCNNGG 1 cut(s) 950
Bsc4I CCNNNNNNNGG 7 cut(s) 324, 468, 730, 841, 1210, 1262, 1386
Bse1I ACTGG 2 cut(s) 92, 1363
Bse3DI GCAATG 1 cut(s) 257
Bse8I GATNNNNATC 1 cut(s) 1536
BseBI CCWGG 2 cut(s) 41, 1464
BseDI CCNNGG 1 cut(s) 950
BseGI GGATG 6 cut(s) 10, 58, 359, 720, 816, 1000
BseJI GATNNNNATC 1 cut(s) 1536
BseLI CCNNNNNNNGG 7 cut(s) 324, 468, 730, 841, 1210, 1262, 1386
BseMI GCAATG 1 cut(s) 257
BseMII CTCAG 4 cut(s) 438, 885, 1373, 1497
BseNI ACTGG 2 cut(s) 92, 1363
BseRI GAGGAG 2 cut(s) 771, 1120
BseSI GKGCMC 1 cut(s) 684
BseXI GCAGC 3 cut(s) 225, 734, 1066
BshFI GGCC 3 cut(s) 39, 834, 1293
BshNI GGYRCC 1 cut(s) 1114
BsiHKAI GWGCWC 2 cut(s) 684, 1045
BsiSI CCGG 2 cut(s) 99, 202
BslFI GGGAC 3 cut(s) 154, 1238, 1449
BslI CCNNNNNNNGG 7 cut(s) 324, 468, 730, 841, 1210, 1262, 1386
BsmAI GTCTC 3 cut(s) 917, 1148, 1234
BsmBI CGTCTC 2 cut(s) 1148, 1234
BsmFI GGGAC 3 cut(s) 154, 1238, 1449
BsnI GGCC 3 cut(s) 39, 834, 1293
Bsp1286I GDGCHC 2 cut(s) 684, 1045
Bsp143I GATC 6 cut(s) 16, 386, 1054, 1174, 1351, 1537
Bsp19I CCATGG 1 cut(s) 950
BspACI CCGC 3 cut(s) 218, 478, 1211
BspANI GGCC 3 cut(s) 39, 834, 1293
BspCNI CTCAG 4 cut(s) 439, 886, 1374, 1498
BspLI GGNNCC 4 cut(s) 191, 1116, 1378, 1461
BspMI ACCTGC 1 cut(s) 253
BspPI GGATC 1 cut(s) 1359
BspT107I GGYRCC 1 cut(s) 1114
BsrDI GCAATG 1 cut(s) 257
BsrI ACTGG 2 cut(s) 92, 1363
BssECI CCNNGG 1 cut(s) 950
BssMI GATC 6 cut(s) 16, 386, 1054, 1174, 1351, 1537
BssT1I CCWWGG 1 cut(s) 950
Bst2UI CCWGG 2 cut(s) 41, 1464
Bst4CI ACNGT 2 cut(s) 1417, 1551
Bst6I CTCTTC 5 cut(s) 318, 723, 906, 915, 1444
BstC8I GCNNGC 2 cut(s) 708, 1524
BstDEI CTNAG 5 cut(s) 447, 564, 894, 1382, 1506
BstDSI CCRYGG 1 cut(s) 950
BstF5I GGATG 6 cut(s) 10, 58, 359, 720, 816, 1000
BstKTI GATC 6 cut(s) 19, 389, 1057, 1177, 1354, 1540
BstMAI GTCTC 3 cut(s) 917, 1148, 1234
BstMBI GATC 6 cut(s) 16, 386, 1054, 1174, 1351, 1537
BstMWI GCNNNNNNNGC 2 cut(s) 707, 1040
BstNI CCWGG 2 cut(s) 41, 1464
BstPAI GACNNNNGTC 1 cut(s) 480
BstSCI CCNGG 3 cut(s) 39, 200, 1462
BstSLI GKGCMC 1 cut(s) 684
BstV1I GCAGC 3 cut(s) 225, 734, 1066
BstV2I GAAGAC 1 cut(s) 498
BstX2I RGATCY 2 cut(s) 1174, 1351
BstXI CCANNNNNNTGG 1 cut(s) 618
BstYI RGATCY 2 cut(s) 1174, 1351
BsuRI GGCC 3 cut(s) 39, 834, 1293
BtgI CCRYGG 1 cut(s) 950
BtsCI GGATG 6 cut(s) 10, 58, 359, 720, 816, 1000
BtsI GCAGTG 1 cut(s) 1517
BtsIMutI CAGTG 2 cut(s) 891, 1517
BveI ACCTGC 1 cut(s) 253
Cac8I GCNNGC 2 cut(s) 708, 1524
Cfr13I GGNCC 4 cut(s) 189, 621, 833, 844
Csp6I GTAC 4 cut(s) 85, 163, 859, 1366
CviAII CATG 7 cut(s) 403, 604, 841, 871, 951, 1273, 1421
CviQI GTAC 4 cut(s) 85, 163, 859, 1366
DdeI CTNAG 5 cut(s) 447, 564, 894, 1382, 1506
DpnI GATC 6 cut(s) 18, 388, 1056, 1176, 1353, 1539
DpnII GATC 6 cut(s) 16, 386, 1054, 1174, 1351, 1537
DraI TTTAAA 2 cut(s) 426, 549
DrdI GACNNNNNNGTC 2 cut(s) 1226, 1250
DseDI GACNNNNNNGTC 2 cut(s) 1226, 1250
EaeI YGGCCR 1 cut(s) 37
Eam1104I CTCTTC 5 cut(s) 318, 723, 906, 915, 1444
EarI CTCTTC 5 cut(s) 318, 723, 906, 915, 1444
Eco130I CCWWGG 1 cut(s) 950
Eco32I GATATC 1 cut(s) 300
Eco47I GGWCC 3 cut(s) 189, 621, 844
Eco57I CTGAAG 3 cut(s) 747, 1038, 1548
EcoO109I RGGNCCY 2 cut(s) 189, 833
EcoRII CCWGG 2 cut(s) 39, 1462
EcoRV GATATC 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 950
EcoT22I ATGCAT 1 cut(s) 1171
ErhI CCWWGG 1 cut(s) 950
Esp3I CGTCTC 2 cut(s) 1148, 1234
FaeI CATG 7 cut(s) 406, 607, 844, 874, 954, 1276, 1424
FalI AAGNNNNNCTT 2 cut(s) 820, 852
FaqI GGGAC 3 cut(s) 154, 1238, 1449
FatI CATG 7 cut(s) 402, 603, 840, 870, 950, 1272, 1420
FauNDI CATATG 2 cut(s) 395, 1261
FbaI TGATCA 1 cut(s) 1537
Fnu4HI GCNGC 4 cut(s) 239, 748, 1080, 1212
FokI GGATG 6 cut(s) 17, 65, 346, 707, 803, 1007
Fsp4HI GCNGC 4 cut(s) 239, 748, 1080, 1212
FspBI CTAG 7 cut(s) 186, 702, 1031, 1046, 1331, 1446, 1478
GluI GCNGC 4 cut(s) 239, 748, 1080, 1212
GsuI CTGGAG 2 cut(s) 1104, 1408
HaeIII GGCC 3 cut(s) 39, 834, 1293
HapII CCGG 2 cut(s) 99, 202
Hin1II CATG 7 cut(s) 406, 607, 844, 874, 954, 1276, 1424
HincII GTYRAC 1 cut(s) 814
HindII GTYRAC 1 cut(s) 814
HindIII AAGCTT 2 cut(s) 740, 1128
HinfI GANTC 6 cut(s) 26, 195, 590, 649, 974, 1311
HpaI GTTAAC 1 cut(s) 814
HpaII CCGG 2 cut(s) 99, 202
HphI GGTGA 4 cut(s) 58, 190, 424, 1156
Hpy166II GTNNAC 2 cut(s) 682, 814
Hpy188I TCNGA 9 cut(s) 31, 381, 738, 771, 786, 979, 1174, 1356, 1406
Hpy8I GTNNAC 2 cut(s) 682, 814
HpyAV CCTTC 7 cut(s) 43, 103, 118, 475, 857, 985, 1283
HpyCH4III ACNGT 2 cut(s) 1417, 1551
HpyCH4IV ACGT 2 cut(s) 1157, 1227
HpyCH4V TGCA 8 cut(s) 257, 262, 416, 682, 891, 903, 1169, 1424
HpyF10VI GCNNNNNNNGC 2 cut(s) 707, 1040
HpyF3I CTNAG 5 cut(s) 447, 564, 894, 1382, 1506
HpySE526I ACGT 2 cut(s) 1157, 1227
Hsp92II CATG 7 cut(s) 406, 607, 844, 874, 954, 1276, 1424
Ksp22I TGATCA 1 cut(s) 1537
KspAI GTTAAC 1 cut(s) 814
Kzo9I GATC 6 cut(s) 16, 386, 1054, 1174, 1351, 1537
LmnI GCTCC 2 cut(s) 784, 1389
Lsp1109I GCAGC 3 cut(s) 225, 734, 1066
LweI GCATC 5 cut(s) 372, 688, 729, 1156, 1178
MaeI CTAG 7 cut(s) 186, 702, 1031, 1046, 1331, 1446, 1478
MaeII ACGT 2 cut(s) 1157, 1227
MaeIII GTNAC 4 cut(s) 398, 430, 1241, 1515
MalI GATC 6 cut(s) 18, 388, 1056, 1176, 1353, 1539
MboI GATC 6 cut(s) 16, 386, 1054, 1174, 1351, 1537
MfeI CAATTG 1 cut(s) 411
MflI RGATCY 2 cut(s) 1174, 1351
MhlI GDGCHC 2 cut(s) 684, 1045
MlsI TGGCCA 1 cut(s) 39
MluNI TGGCCA 1 cut(s) 39
MlyI GAGTC 2 cut(s) 20, 189
MmeI TCCRAC 1 cut(s) 432
Mox20I TGGCCA 1 cut(s) 39
Mph1103I ATGCAT 1 cut(s) 1171
MroXI GAANNNNTTC 2 cut(s) 732, 1131
MscI TGGCCA 1 cut(s) 39
MseI TTAA 6 cut(s) 69, 425, 548, 813, 1010, 1037
Msp20I TGGCCA 1 cut(s) 39
MspA1I CMGCKG 1 cut(s) 1526
MspI CCGG 2 cut(s) 99, 202
MspR9I CCNGG 3 cut(s) 41, 202, 1464
MunI CAATTG 1 cut(s) 411
MvaI CCWGG 2 cut(s) 41, 1464
MwoI GCNNNNNNNGC 2 cut(s) 707, 1040
NciI CCSGG 1 cut(s) 202
NcoI CCATGG 1 cut(s) 950
NdeI CATATG 2 cut(s) 395, 1261
NdeII GATC 6 cut(s) 16, 386, 1054, 1174, 1351, 1537
NlaIII CATG 7 cut(s) 406, 607, 844, 874, 954, 1276, 1424
NlaIV GGNNCC 4 cut(s) 191, 1116, 1378, 1461
NmeAIII GCCGAG 1 cut(s) 181
NmuCI GTSAC 4 cut(s) 398, 430, 1241, 1515
NsiI ATGCAT 1 cut(s) 1171
PdmI GAANNNNTTC 2 cut(s) 732, 1131
PfeI GAWTC 4 cut(s) 590, 649, 974, 1311
PflMI CCANNNNNTGG 1 cut(s) 1262
PfoI TCCNGGA 1 cut(s) 1462
PkrI GCNGC 4 cut(s) 240, 749, 1081, 1213
PleI GAGTC 2 cut(s) 20, 189
PpsI GAGTC 2 cut(s) 20, 189
PpuMI RGGWCCY 1 cut(s) 189
PshAI GACNNNNGTC 1 cut(s) 480
PshBI ATTAAT 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 189
Psp6I CCWGG 2 cut(s) 39, 1462
PspGI CCWGG 2 cut(s) 39, 1462
PspN4I GGNNCC 4 cut(s) 191, 1116, 1378, 1461
PspPI GGNCC 4 cut(s) 189, 621, 833, 844
PspPPI RGGWCCY 1 cut(s) 189
PsuI RGATCY 2 cut(s) 1174, 1351
PvuII CAGCTG 1 cut(s) 1526
RsaI GTAC 4 cut(s) 86, 164, 860, 1367
RsaNI GTAC 4 cut(s) 85, 163, 859, 1366
SaqAI TTAA 6 cut(s) 69, 425, 548, 813, 1010, 1037
SatI GCNGC 4 cut(s) 239, 748, 1080, 1212
Sau3AI GATC 6 cut(s) 16, 386, 1054, 1174, 1351, 1537
Sau96I GGNCC 4 cut(s) 189, 621, 833, 844
ScaI AGTACT 2 cut(s) 86, 164
SchI GAGTC 2 cut(s) 20, 189
ScrFI CCNGG 3 cut(s) 41, 202, 1464
SduI GDGCHC 2 cut(s) 684, 1045
SfaNI GCATC 5 cut(s) 372, 688, 729, 1156, 1178
SinI GGWCC 3 cut(s) 189, 621, 844
SmiI ATTTAAAT 1 cut(s) 426
SmlI CTYRAG 2 cut(s) 20, 80
SmoI CTYRAG 2 cut(s) 20, 80
SsiI CCGC 3 cut(s) 218, 478, 1211
SspMI CTAG 7 cut(s) 186, 702, 1031, 1046, 1331, 1446, 1478
StyD4I CCNGG 3 cut(s) 39, 200, 1462
StyI CCWWGG 1 cut(s) 950
SwaI ATTTAAAT 1 cut(s) 426
TaaI ACNGT 2 cut(s) 1417, 1551
TaiI ACGT 2 cut(s) 1160, 1230
TaqI TCGA 5 cut(s) 223, 501, 907, 1199, 1232
TatI WGTACW 3 cut(s) 84, 162, 1365
TauI GCSGC 1 cut(s) 1214
TfiI GAWTC 4 cut(s) 590, 649, 974, 1311
Tru1I TTAA 6 cut(s) 69, 425, 548, 813, 1010, 1037
Tru9I TTAA 6 cut(s) 69, 425, 548, 813, 1010, 1037
TscAI CASTG 2 cut(s) 898, 1524
TseFI GTSAC 4 cut(s) 398, 430, 1241, 1515
TseI GCWGC 3 cut(s) 238, 747, 1079
Tsp45I GTSAC 4 cut(s) 398, 430, 1241, 1515
TspDTI ATGAA 7 cut(s) 122, 149, 348, 505, 829, 839, 1409
TspGWI ACGGA 1 cut(s) 812
TspRI CASTG 2 cut(s) 898, 1524
Van91I CCANNNNNTGG 1 cut(s) 1262
VneI GTGCAC 1 cut(s) 680
VpaK11BI GGWCC 3 cut(s) 189, 621, 844
VspI ATTAAT 1 cut(s) 69
XapI RAATTY 3 cut(s) 543, 773, 1138
XbaI TCTAGA 1 cut(s) 1330
XcmI CCANNNNNNNNNTGG 2 cut(s) 615, 1370
XmnI GAANNNNTTC 2 cut(s) 732, 1131
XspI CTAG 7 cut(s) 186, 702, 1031, 1046, 1331, 1446, 1478
ZrmI AGTACT 2 cut(s) 86, 164
Zsp2I ATGCAT 1 cut(s) 1171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.