Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002748

Physical Location & Seq

Genomic Coordinates Reverse (-)

205913 .. 208536

Gene Structure 2624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005600

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGATGGTGGACTCATCTTCTTCGGCCATAGACTCTTCGAATATCATCGGGTTCCAGCTTTTGAAGAAACATGGGTGGACAGAAGGAACGGGTCTCGGTACTTCCGAGCAGGGTAGGTTAGAGCCCGTGCAAGCTTACTTGAAGGAAAGCAAACGAGGCTTGGGAGCGGATGCACCAAAAAAAAGATCATTGCAAGTTTCAGAAAATGAGTCTAGTGGAAAGTCCGCAAAGAACATTAACTTCACAAATTGGGTTCAGGAGGAAGATAGAATAAGAAAGGATATGACGGCTTCAATTTCATCAACAGCCATCAATTCATCCAATATAGGCTTTCAGCTTTTGAAGAAACATGGTTGGAAAGAAGGAACTGGTCTTGGCATTTGTGAGCAGGGAAGGTTGGAGCCTGTACAAACGTACTTGAAGAATAATAAGCGGGGACTGGGAGCAGATAAGATTCGGAAGGCTTTAAAGCCCCCTGATCCTCCTGCCTTGAATCAAAAAAATGACCAGGAGCTGCATTCAAAAAAATCCAAGGGACTCTCAAAGAAGATGAGGAAGATGCGGGAGTTAGAAAGCAGATTGCAAGAGAAGGAATTTGAGCGGGCCTTTTTCAGGGAATTCTGGCCGGATAATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch

Protein Analysis

213

Amino Acids

23.85

Weight (kDa)

9.71

Isoelectric Point (pI)

43.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	16 - 57	8.3e-16	G-patch domain
G-patch	PF01585	107 - 150	9.1e-18	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52350 AT5G08535 AT5G08535 AT5G08535 AT5G08535
fragaria_vesca	FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311
malus_domestica	MD13G1001300.v1.1
prunus_persica	Prupe.1G351400_v2.0.a1 Prupe.1G351400_v2.0.a1
pyrus_communis	pycom13g00100
rosa_chinensis	RchiOBHm_Chr4g0447151 RchiOBHm_Chr5g0030611
rosa_laevigata	RLG00000005600 RLG00000033233
rosa_multiflora	Rmu_sc0003238.1_g000010 Rmu_sc0008328.1_g000005 Rmu_ssc0000344.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049670 Rroxscaffold_5G00387540
rosa_rugosa	Rorug04G0378500 Rorug04G0378600 Rorug05G0118900
rosa_samantha	Rh4AG439800 Rh4BG448900 Rh4CG465900 Rh4DG447300 Rh5CG233800 Rh5DG214800
rosa_wichuraiana	Rw4G037630 Rw5G019320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	167, 601
AciI	CCGC	5 cut(s)	167, 225, 433, 562, 601
AclWI	GGATC	1 cut(s)	473
AcoI	YGGCCR	2 cut(s)	24, 623
AcsI	RAATTY	2 cut(s)	593, 617
AfaI	GTAC	3 cut(s)	100, 408, 416
AfiI	CCNNNNNNNGG	1 cut(s)	612
AgsI	TTSAA	7 cut(s)	64, 142, 294, 343, 421, 493, 522
AjnI	CCWGG	1 cut(s)	507
AluBI	AGCT	4 cut(s)	58, 134, 337, 514
AluI	AGCT	4 cut(s)	58, 134, 337, 514
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	1 cut(s)	473
AlwNI	CAGNNNCTG	1 cut(s)	514
AoxI	GGCC	3 cut(s)	24, 603, 623
ApeKI	GCWGC	1 cut(s)	514
ApoI	RAATTY	2 cut(s)	593, 617
AspS9I	GGNCC	1 cut(s)	603
AsuII	TTCGAA	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	501
BccI	CCATC	1 cut(s)	317
BceAI	ACGGC	1 cut(s)	303
BciT130I	CCWGG	1 cut(s)	509
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	1 cut(s)	213
BisI	GCNGC	1 cut(s)	515
BlsI	GCNGC	1 cut(s)	516
Bme1390I	CCNGG	1 cut(s)	509
BmgT120I	GGNCC	1 cut(s)	603
BmiI	GGNNCC	2 cut(s)	53, 402
BmrFI	CCNGG	1 cut(s)	509
BmrI	ACTGGG	1 cut(s)	449
BmsI	GCATC	2 cut(s)	160, 549
BmuI	ACTGGG	1 cut(s)	449
Bpu14I	TTCGAA	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	531
Bsc4I	CCNNNNNNNGG	1 cut(s)	612
Bse1I	ACTGG	2 cut(s)	373, 444
Bse3DI	GCAATG	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	509
BseDI	CCNNGG	1 cut(s)	531
BseGI	GGATG	2 cut(s)	175, 317
BseLI	CCNNNNNNNGG	1 cut(s)	612
BseMI	GCAATG	1 cut(s)	188
BseNI	ACTGG	2 cut(s)	373, 444
BseXI	GCAGC	1 cut(s)	501
BshFI	GGCC	3 cut(s)	26, 605, 625
BsiSI	CCGG	1 cut(s)	626
BslFI	GGGAC	2 cut(s)	450, 549
BslI	CCNNNNNNNGG	1 cut(s)	612
BsmAI	GTCTC	1 cut(s)	98
BsmFI	GGGAC	2 cut(s)	450, 549
BsmI	GAATGC	1 cut(s)	517
BsnI	GGCC	3 cut(s)	26, 605, 625
Bso31I	GGTCTC	1 cut(s)	98
Bsp119I	TTCGAA	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp1407I	TGTACA	1 cut(s)	406
Bsp143I	GATC	2 cut(s)	185, 478
BspACI	CCGC	5 cut(s)	167, 225, 433, 562, 601
BspANI	GGCC	3 cut(s)	26, 605, 625
BspLI	GGNNCC	2 cut(s)	53, 402
BspPI	GGATC	1 cut(s)	473
BspT104I	TTCGAA	1 cut(s)	38
BspTNI	GGTCTC	1 cut(s)	98
BsrBI	CCGCTC	2 cut(s)	167, 601
BsrDI	GCAATG	1 cut(s)	188
BsrGI	TGTACA	1 cut(s)	406
BsrI	ACTGG	2 cut(s)	373, 444
BssECI	CCNNGG	1 cut(s)	531
BssMI	GATC	2 cut(s)	185, 478
BssT1I	CCWWGG	1 cut(s)	531
Bst2UI	CCWGG	1 cut(s)	509
Bst6I	CTCTTC	1 cut(s)	40
BstAUI	TGTACA	1 cut(s)	406
BstBI	TTCGAA	1 cut(s)	38
BstC8I	GCNNGC	2 cut(s)	132, 603
BstENI	CCTNNNNNAGG	1 cut(s)	610
BstF5I	GGATG	2 cut(s)	175, 317
BstKTI	GATC	2 cut(s)	188, 481
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	2 cut(s)	185, 478
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstNI	CCWGG	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	507
BstV1I	GCAGC	1 cut(s)	501
BsuRI	GGCC	3 cut(s)	26, 605, 625
BtsCI	GGATG	2 cut(s)	175, 317
Cac8I	GCNNGC	2 cut(s)	132, 603
CaiI	CAGNNNCTG	1 cut(s)	514
Cfr13I	GGNCC	1 cut(s)	603
Csp6I	GTAC	3 cut(s)	99, 407, 415
CviAII	CATG	2 cut(s)	71, 350
CviQI	GTAC	3 cut(s)	99, 407, 415
DpnI	GATC	2 cut(s)	187, 480
DpnII	GATC	2 cut(s)	185, 478
DraI	TTTAAA	1 cut(s)	468
EaeI	YGGCCR	2 cut(s)	24, 623
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	531
Eco24I	GRGCYC	1 cut(s)	126
Eco31I	GGTCTC	1 cut(s)	98
EcoNI	CCTNNNNNAGG	1 cut(s)	610
EcoRI	GAATTC	1 cut(s)	617
EcoRII	CCWGG	1 cut(s)	507
EcoT14I	CCWWGG	1 cut(s)	531
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	531
FaeI	CATG	2 cut(s)	74, 353
FaiI	YATR	5 cut(s)	29, 72, 284, 326, 351
FaqI	GGGAC	2 cut(s)	450, 549
FatI	CATG	2 cut(s)	70, 349
FauI	CCCGC	3 cut(s)	426, 555, 594
Fnu4HI	GCNGC	1 cut(s)	515
FokI	GGATG	2 cut(s)	182, 304
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	1 cut(s)	515
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	1 cut(s)	515
HaeIII	GGCC	3 cut(s)	26, 605, 625
HapII	CCGG	1 cut(s)	626
Hin1II	CATG	2 cut(s)	74, 353
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	6 cut(s)	11, 32, 209, 454, 493, 537
HpaII	CCGG	1 cut(s)	626
Hpy166II	GTNNAC	2 cut(s)	10, 78
Hpy188I	TCNGA	4 cut(s)	106, 202, 459, 638
Hpy188III	TCNNGA	1 cut(s)	257
Hpy8I	GTNNAC	2 cut(s)	10, 78
HpyAV	CCTTC	6 cut(s)	77, 136, 356, 387, 454, 583
HpyCH4IV	ACGT	1 cut(s)	413
HpyCH4V	TGCA	5 cut(s)	130, 173, 193, 517, 583
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpySE526I	ACGT	1 cut(s)	413
Hsp92II	CATG	2 cut(s)	74, 353
Kzo9I	GATC	2 cut(s)	185, 478
LmnI	GCTCC	4 cut(s)	164, 400, 443, 511
Lsp1109I	GCAGC	1 cut(s)	501
LweI	GCATC	2 cut(s)	160, 549
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	1 cut(s)	413
MalI	GATC	2 cut(s)	187, 480
MbiI	CCGCTC	2 cut(s)	167, 601
MboI	GATC	2 cut(s)	185, 478
MboII	GAAGA	9 cut(s)	9, 12, 27, 76, 275, 355, 433, 559, 568
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	5 cut(s)	247, 294, 313, 593, 617
MlyI	GAGTC	4 cut(s)	5, 26, 218, 531
MmeI	TCCRAC	2 cut(s)	335, 378
MnlI	CCTC	4 cut(s)	149, 253, 492, 546
MseI	TTAA	2 cut(s)	237, 467
MspI	CCGG	1 cut(s)	626
MspR9I	CCNGG	1 cut(s)	509
Mva1269I	GAATGC	1 cut(s)	517
MvaI	CCWGG	1 cut(s)	509
MwoI	GCNNNNNNNGC	1 cut(s)	156
NdeII	GATC	2 cut(s)	185, 478
NlaIII	CATG	2 cut(s)	74, 353
NlaIV	GGNNCC	2 cut(s)	53, 402
NspV	TTCGAA	1 cut(s)	38
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PctI	GAATGC	1 cut(s)	517
PfeI	GAWTC	2 cut(s)	454, 493
PkrI	GCNGC	1 cut(s)	516
PleI	GAGTC	4 cut(s)	5, 26, 217, 531
PpsI	GAGTC	4 cut(s)	5, 26, 217, 531
Psp6I	CCWGG	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	507
PspN4I	GGNNCC	2 cut(s)	53, 402
PspPI	GGNCC	1 cut(s)	603
PstNI	CAGNNNCTG	1 cut(s)	514
RsaI	GTAC	3 cut(s)	100, 408, 416
RsaNI	GTAC	3 cut(s)	99, 407, 415
SaqAI	TTAA	2 cut(s)	237, 467
SatI	GCNGC	1 cut(s)	515
Sau3AI	GATC	2 cut(s)	185, 478
Sau96I	GGNCC	1 cut(s)	603
SchI	GAGTC	4 cut(s)	5, 26, 218, 531
ScrFI	CCNGG	1 cut(s)	509
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	7 cut(s)	60, 119, 136, 339, 398, 416, 516
SfaNI	GCATC	2 cut(s)	160, 549
SfuI	TTCGAA	1 cut(s)	38
Sse9I	AATT	5 cut(s)	247, 294, 313, 593, 617
SsiI	CCGC	5 cut(s)	167, 225, 433, 562, 601
SspMI	CTAG	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	507
StyI	CCWWGG	1 cut(s)	531
TaiI	ACGT	1 cut(s)	416
TaqI	TCGA	1 cut(s)	38
TasI	AATT	5 cut(s)	247, 294, 313, 593, 617
TatI	WGTACW	1 cut(s)	406
TfiI	GAWTC	2 cut(s)	454, 493
Tru1I	TTAA	2 cut(s)	237, 467
Tru9I	TTAA	2 cut(s)	237, 467
TseI	GCWGC	1 cut(s)	514
TspDTI	ATGAA	2 cut(s)	288, 306
XagI	CCTNNNNNAGG	1 cut(s)	610
XapI	RAATTY	2 cut(s)	593, 617
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.