Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002748

Physical Location & Seq

Genomic Coordinates Reverse (-)

73491 .. 76286

Gene Structure 2796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g00100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGGAGAGGAGGAGGCGGTAACGGTGGGGTCATCTTCTTCAGCTCCAGCTATAGACTCCTCCAATATTGGGTTTCAGGGTAGGCTAGTGCCTATTCAAGCTTACTTGAAGGACAACAAACGCGGCATAGGAGCAGATACTTCAACAAATAAATTCTTGCCGGTTTCTGAAATTTCGGATTCTAGTCAACGAAAGTATGAAAAGAAGGAAGAAGGTATGGGAAACGGCATGATGTCTTCAAGTTGTTCATCAACAGCCATCAATTCCTCCAATATAGGCTTTCAGCTTTTGAAGAAACATGGTTGGAAAGAAGGAACTGGTCTTGGGATTTCTGAGCAGGGAAGGTTAGAGCCTGTACAGACTTACTTAAAGAATAATAAACGGGGCCTGGGAGCAGAAAAGTTAAAGAAGGCGCTAAAGCCCCCTGATTCTACTGCCTTGATTAAAAAAAATGACCAGGAGGGGCAATCAAGAAAAGGCAAGGGATTCTCCAAGAAGATGAAGAAGATGCAGGAGTTAGAGAAAAATTTGCAGGAGAGAGAATTTGAGCGTGCCTTTTTCAGGGAGTTTTGGCCAAACAACGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch

Protein Analysis

196

Amino Acids

21.58

Weight (kDa)

9.56

Isoelectric Point (pI)

52.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52350 AT5G08535 AT5G08535 AT5G08535 AT5G08535
fragaria_vesca	FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311
malus_domestica	MD13G1001300.v1.1
prunus_persica	Prupe.1G351400_v2.0.a1 Prupe.1G351400_v2.0.a1
pyrus_communis	pycom13g00100
rosa_chinensis	RchiOBHm_Chr4g0447151 RchiOBHm_Chr5g0030611
rosa_laevigata	RLG00000005600 RLG00000033233
rosa_multiflora	Rmu_sc0003238.1_g000010 Rmu_sc0008328.1_g000005 Rmu_ssc0000344.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049670 Rroxscaffold_5G00387540
rosa_rugosa	Rorug04G0378500 Rorug04G0378600 Rorug05G0118900
rosa_samantha	Rh4AG439800 Rh4BG448900 Rh4CG465900 Rh4DG447300 Rh5CG233800 Rh5DG214800
rosa_wichuraiana	Rw4G037630 Rw5G019320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	123
AciI	CCGC	2 cut(s)	17, 123
AclI	AACGTT	1 cut(s)	582
AcoI	YGGCCR	1 cut(s)	572
AcsI	RAATTY	4 cut(s)	152, 171, 526, 542
AcuI	CTGAAG	1 cut(s)	24
AfaI	GTAC	1 cut(s)	357
AfiI	CCNNNNNNNGG	2 cut(s)	69, 561
AgsI	TTSAA	5 cut(s)	98, 109, 144, 240, 292
AjnI	CCWGG	2 cut(s)	387, 456
AluBI	AGCT	4 cut(s)	44, 50, 101, 286
AluI	AGCT	4 cut(s)	44, 50, 101, 286
AoxI	GGCC	2 cut(s)	385, 572
ApoI	RAATTY	4 cut(s)	152, 171, 526, 542
AspLEI	GCGC	1 cut(s)	415
AspS9I	GGNCC	1 cut(s)	385
BalI	TGGCCA	1 cut(s)	574
BbsI	GAAGAC	1 cut(s)	228
BccI	CCATC	1 cut(s)	266
BceAI	ACGGC	1 cut(s)	241
BciT130I	CCWGG	2 cut(s)	389, 458
BfaI	CTAG	2 cut(s)	86, 183
BfmI	CTRYAG	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	416
BisI	GCNGC	1 cut(s)	124
BlsI	GCNGC	1 cut(s)	125
Bme1390I	CCNGG	2 cut(s)	389, 458
BmgT120I	GGNCC	1 cut(s)	385
BmiI	GGNNCC	1 cut(s)	386
BmrFI	CCNGG	2 cut(s)	389, 458
BmsI	GCATC	1 cut(s)	498
BpiI	GAAGAC	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 561
Bse118I	RCCGGY	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	322
BseBI	CCWGG	2 cut(s)	389, 458
BseDI	CCNNGG	1 cut(s)	388
BseLI	CCNNNNNNNGG	2 cut(s)	69, 561
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	322
BseRI	GAGGAG	3 cut(s)	23, 26, 49
Bsh1236I	CGCG	1 cut(s)	123
BshFI	GGCC	2 cut(s)	387, 574
BsiSI	CCGG	1 cut(s)	161
BslI	CCNNNNNNNGG	2 cut(s)	69, 561
BsnI	GGCC	2 cut(s)	387, 574
Bsp1407I	TGTACA	1 cut(s)	355
BspACI	CCGC	2 cut(s)	17, 123
BspANI	GGCC	2 cut(s)	387, 574
BspCNI	CTCAG	1 cut(s)	325
BspFNI	CGCG	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	386
BsrFI	RCCGGY	1 cut(s)	160
BsrGI	TGTACA	1 cut(s)	355
BsrI	ACTGG	1 cut(s)	322
BssAI	RCCGGY	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	388
Bst2UI	CCWGG	2 cut(s)	389, 458
Bst4CI	ACNGT	1 cut(s)	25
BstAUI	TGTACA	1 cut(s)	355
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	1 cut(s)	333
BstENI	CCTNNNNNAGG	1 cut(s)	559
BstFNI	CGCG	1 cut(s)	123
BstH2I	RGCGCY	1 cut(s)	416
BstHHI	GCGC	1 cut(s)	415
BstNI	CCWGG	2 cut(s)	389, 458
BstSCI	CCNGG	2 cut(s)	387, 456
BstSFI	CTRYAG	1 cut(s)	51
BstUI	CGCG	1 cut(s)	123
BstV2I	GAAGAC	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	387, 574
Cac8I	GCNNGC	1 cut(s)	552
CfoI	GCGC	1 cut(s)	415
Cfr10I	RCCGGY	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	385
Csp6I	GTAC	1 cut(s)	356
CviAII	CATG	2 cut(s)	229, 299
CviQI	GTAC	1 cut(s)	356
DdeI	CTNAG	1 cut(s)	333
EaeI	YGGCCR	1 cut(s)	572
Eco57I	CTGAAG	1 cut(s)	24
EcoNI	CCTNNNNNAGG	1 cut(s)	559
EcoO109I	RGGNCCY	1 cut(s)	385
EcoRII	CCWGG	2 cut(s)	387, 456
FaeI	CATG	2 cut(s)	232, 302
FaiI	YATR	7 cut(s)	53, 128, 198, 218, 230, 275, 300
FatI	CATG	2 cut(s)	228, 298
Fnu4HI	GCNGC	1 cut(s)	124
Fsp4HI	GCNGC	1 cut(s)	124
FspBI	CTAG	2 cut(s)	86, 183
GlaI	GCGC	1 cut(s)	414
GluI	GCNGC	1 cut(s)	124
GsuI	CTGGAG	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	416
HaeIII	GGCC	2 cut(s)	387, 574
HapII	CCGG	1 cut(s)	161
HhaI	GCGC	1 cut(s)	415
Hin1II	CATG	2 cut(s)	232, 302
Hin6I	GCGC	1 cut(s)	413
HinP1I	GCGC	1 cut(s)	413
HincII	GTYRAC	1 cut(s)	188
HindII	GTYRAC	1 cut(s)	188
HindIII	AAGCTT	1 cut(s)	99
HinfI	GANTC	4 cut(s)	56, 179, 428, 486
HpaII	CCGG	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	188
Hpy188I	TCNGA	3 cut(s)	169, 178, 334
Hpy188III	TCNNGA	1 cut(s)	471
Hpy8I	GTNNAC	1 cut(s)	188
HpyAV	CCTTC	6 cut(s)	103, 199, 206, 305, 336, 403
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	1 cut(s)	582
HpyCH4V	TGCA	2 cut(s)	511, 532
HpyF3I	CTNAG	1 cut(s)	333
HpySE526I	ACGT	1 cut(s)	582
Hsp92II	CATG	2 cut(s)	232, 302
HspAI	GCGC	1 cut(s)	413
LmnI	GCTCC	3 cut(s)	49, 131, 392
LweI	GCATC	1 cut(s)	498
MaeI	CTAG	2 cut(s)	86, 183
MaeII	ACGT	1 cut(s)	582
MaeIII	GTNAC	1 cut(s)	19
MboII	GAAGA	8 cut(s)	27, 30, 221, 228, 304, 508, 514, 517
MlsI	TGGCCA	1 cut(s)	574
MluCI	AATT	5 cut(s)	152, 171, 262, 526, 542
MluNI	TGGCCA	1 cut(s)	574
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	284
MnlI	CCTC	5 cut(s)	4, 7, 70, 277, 454
Mox20I	TGGCCA	1 cut(s)	574
MscI	TGGCCA	1 cut(s)	574
MseI	TTAA	4 cut(s)	368, 404, 444, 586
Msp20I	TGGCCA	1 cut(s)	574
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	2 cut(s)	389, 458
MvaI	CCWGG	2 cut(s)	389, 458
MvnI	CGCG	1 cut(s)	123
NlaIII	CATG	2 cut(s)	232, 302
NlaIV	GGNNCC	1 cut(s)	386
PfeI	GAWTC	3 cut(s)	179, 428, 486
PkrI	GCNGC	1 cut(s)	125
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
Psp1406I	AACGTT	1 cut(s)	582
Psp6I	CCWGG	2 cut(s)	387, 456
PspGI	CCWGG	2 cut(s)	387, 456
PspN4I	GGNNCC	1 cut(s)	386
PspPI	GGNCC	1 cut(s)	385
RsaI	GTAC	1 cut(s)	357
RsaNI	GTAC	1 cut(s)	356
SaqAI	TTAA	4 cut(s)	368, 404, 444, 586
SatI	GCNGC	1 cut(s)	124
Sau96I	GGNCC	1 cut(s)	385
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	389, 458
SetI	ASST	7 cut(s)	46, 52, 103, 217, 288, 347, 585
SfaNI	GCATC	1 cut(s)	498
SfcI	CTRYAG	1 cut(s)	51
Sse9I	AATT	5 cut(s)	152, 171, 262, 526, 542
SsiI	CCGC	2 cut(s)	17, 123
SspI	AATATT	1 cut(s)	67
SspMI	CTAG	2 cut(s)	86, 183
StyD4I	CCNGG	2 cut(s)	387, 456
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	1 cut(s)	585
TasI	AATT	5 cut(s)	152, 171, 262, 526, 542
TatI	WGTACW	1 cut(s)	355
TauI	GCSGC	1 cut(s)	126
TfiI	GAWTC	3 cut(s)	179, 428, 486
Tru1I	TTAA	4 cut(s)	368, 404, 444, 586
Tru9I	TTAA	4 cut(s)	368, 404, 444, 586
TspDTI	ATGAA	3 cut(s)	213, 237, 515
XagI	CCTNNNNNAGG	1 cut(s)	559
XapI	RAATTY	4 cut(s)	152, 171, 526, 542
XspI	CTAG	2 cut(s)	86, 183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.