Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002748

Physical Location & Seq

Genomic Coordinates Forward (+)

64646980 .. 64650041

Gene Structure 3062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG447300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGATGGTGGACTCATCTTCTTCGGCCATAGCCTCTTCGAATATCGGGTTCCAGCTTTTGAAGAAACATGGGTGGACAGAAGGAACGGGTCTCGGTGCTTCCGAGCAGGGTAGGTTAGAGCCCGTGCAAGCTTACTTGAAGGAAAGCAAACAAGGCTTGGGAGCTGATGCACCAAAAAAAAGATCGTTGCAAGTTTCAGAAAATGAGTCTAGTGGAAAGTCCGCAAAGGAGGAAGAAAGAATAAGAAAGGATATGACGGCTTCAACTTCATCAACAGCCATTAATTCATCTAATATAGGCTTTCAGCTTTTGAAGAAACATGGTTGGAAAGAAGGAACTGGTCTTGGCATTTGTGAGCAGGGAAGGTTGGAGCCTGTACAAACGTACTTGAAGAATAATAAGCGGGGACTGGGAGCAGATAAGATACGGAAGGCTTTAAAGCCCCCTGATCCTCCTGCCTTGAATCAAAAAAATGACCAGGAGCTGCATTCAAAAAAATCCAAGGGACTCTCAAAGAAGATGAGGAAGATGCGGGAGTTAGAAAGCAGATTGCAAGAGAAGGAATTTGAGCGGGTCTTTTTCAGGGAATTCTGGCCGGATAATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch

Protein Analysis

202

Amino Acids

22.55

Weight (kDa)

9.71

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	13 - 56	9.5e-17	G-patch domain
G-patch_2	PF12656	13 - 57	3e-06	G-patch domain
G-patch	PF01585	97 - 140	8.4e-18	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52350 AT5G08535 AT5G08535 AT5G08535 AT5G08535
fragaria_vesca	FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311
malus_domestica	MD13G1001300.v1.1
prunus_persica	Prupe.1G351400_v2.0.a1 Prupe.1G351400_v2.0.a1
pyrus_communis	pycom13g00100
rosa_chinensis	RchiOBHm_Chr4g0447151 RchiOBHm_Chr5g0030611
rosa_laevigata	RLG00000005600 RLG00000033233
rosa_multiflora	Rmu_sc0003238.1_g000010 Rmu_sc0008328.1_g000005 Rmu_ssc0000344.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049670 Rroxscaffold_5G00387540
rosa_rugosa	Rorug04G0378500 Rorug04G0378600 Rorug05G0118900
rosa_samantha	Rh4AG439800 Rh4BG448900 Rh4CG465900 Rh4DG447300 Rh5CG233800 Rh5DG214800
rosa_wichuraiana	Rw4G037630 Rw5G019320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	571
AciI	CCGC	4 cut(s)	222, 403, 532, 571
AclWI	GGATC	1 cut(s)	443
AcoI	YGGCCR	2 cut(s)	24, 593
AcsI	RAATTY	2 cut(s)	563, 587
AfaI	GTAC	2 cut(s)	378, 386
AgsI	TTSAA	7 cut(s)	61, 139, 264, 313, 391, 463, 492
AjnI	CCWGG	1 cut(s)	477
AluBI	AGCT	5 cut(s)	55, 131, 164, 307, 484
AluI	AGCT	5 cut(s)	55, 131, 164, 307, 484
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	1 cut(s)	443
AlwNI	CAGNNNCTG	1 cut(s)	484
AoxI	GGCC	2 cut(s)	24, 593
ApeKI	GCWGC	1 cut(s)	484
ApoI	RAATTY	2 cut(s)	563, 587
AseI	ATTAAT	1 cut(s)	282
AsuII	TTCGAA	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	471
BceAI	ACGGC	1 cut(s)	273
BciT130I	CCWGG	1 cut(s)	479
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	1 cut(s)	210
BisI	GCNGC	1 cut(s)	485
BlsI	GCNGC	1 cut(s)	486
Bme1390I	CCNGG	1 cut(s)	479
BmiI	GGNNCC	2 cut(s)	50, 372
BmrFI	CCNGG	1 cut(s)	479
BmrI	ACTGGG	1 cut(s)	419
BmsI	GCATC	2 cut(s)	157, 519
BmuI	ACTGGG	1 cut(s)	419
Bpu14I	TTCGAA	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	501
Bse1I	ACTGG	2 cut(s)	343, 414
BseBI	CCWGG	1 cut(s)	479
BseDI	CCNNGG	1 cut(s)	501
BseNI	ACTGG	2 cut(s)	343, 414
BseXI	GCAGC	1 cut(s)	471
BshFI	GGCC	2 cut(s)	26, 595
BsiSI	CCGG	1 cut(s)	596
BslFI	GGGAC	2 cut(s)	420, 519
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	2 cut(s)	420, 519
BsmI	GAATGC	1 cut(s)	487
BsnI	GGCC	2 cut(s)	26, 595
Bso31I	GGTCTC	1 cut(s)	95
Bsp119I	TTCGAA	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp1407I	TGTACA	1 cut(s)	376
Bsp143I	GATC	2 cut(s)	182, 448
BspACI	CCGC	4 cut(s)	222, 403, 532, 571
BspANI	GGCC	2 cut(s)	26, 595
BspLI	GGNNCC	2 cut(s)	50, 372
BspPI	GGATC	1 cut(s)	443
BspT104I	TTCGAA	1 cut(s)	38
BspTNI	GGTCTC	1 cut(s)	95
BsrBI	CCGCTC	1 cut(s)	571
BsrGI	TGTACA	1 cut(s)	376
BsrI	ACTGG	2 cut(s)	343, 414
BssECI	CCNNGG	1 cut(s)	501
BssMI	GATC	2 cut(s)	182, 448
BssT1I	CCWWGG	1 cut(s)	501
Bst2UI	CCWGG	1 cut(s)	479
Bst6I	CTCTTC	1 cut(s)	40
BstAUI	TGTACA	1 cut(s)	376
BstBI	TTCGAA	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	129
BstKTI	GATC	2 cut(s)	185, 451
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	2 cut(s)	182, 448
BstMWI	GCNNNNNNNGC	1 cut(s)	153
BstNI	CCWGG	1 cut(s)	479
BstSCI	CCNGG	1 cut(s)	477
BstV1I	GCAGC	1 cut(s)	471
BsuRI	GGCC	2 cut(s)	26, 595
Cac8I	GCNNGC	1 cut(s)	129
CaiI	CAGNNNCTG	1 cut(s)	484
Csp6I	GTAC	2 cut(s)	377, 385
CviAII	CATG	2 cut(s)	68, 320
CviQI	GTAC	2 cut(s)	377, 385
DpnI	GATC	2 cut(s)	184, 450
DpnII	GATC	2 cut(s)	182, 448
DraI	TTTAAA	1 cut(s)	438
EaeI	YGGCCR	2 cut(s)	24, 593
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	501
Eco24I	GRGCYC	1 cut(s)	123
Eco31I	GGTCTC	1 cut(s)	95
EcoRI	GAATTC	1 cut(s)	587
EcoRII	CCWGG	1 cut(s)	477
EcoT14I	CCWWGG	1 cut(s)	501
EcoT38I	GRGCYC	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	501
FaeI	CATG	2 cut(s)	71, 323
FaiI	YATR	5 cut(s)	29, 69, 254, 296, 321
FaqI	GGGAC	2 cut(s)	420, 519
FatI	CATG	2 cut(s)	67, 319
FauI	CCCGC	3 cut(s)	396, 525, 564
Fnu4HI	GCNGC	1 cut(s)	485
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	1 cut(s)	485
FspBI	CTAG	1 cut(s)	210
GluI	GCNGC	1 cut(s)	485
HaeIII	GGCC	2 cut(s)	26, 595
HapII	CCGG	1 cut(s)	596
Hin1II	CATG	2 cut(s)	71, 323
HindIII	AAGCTT	1 cut(s)	129
HinfI	GANTC	4 cut(s)	11, 206, 463, 507
HpaII	CCGG	1 cut(s)	596
Hpy166II	GTNNAC	2 cut(s)	10, 75
Hpy188I	TCNGA	3 cut(s)	103, 199, 608
Hpy8I	GTNNAC	2 cut(s)	10, 75
HpyAV	CCTTC	6 cut(s)	74, 133, 326, 357, 424, 553
HpyCH4IV	ACGT	1 cut(s)	383
HpyCH4V	TGCA	5 cut(s)	127, 170, 190, 487, 553
HpyF10VI	GCNNNNNNNGC	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	383
Hsp92II	CATG	2 cut(s)	71, 323
Kzo9I	GATC	2 cut(s)	182, 448
LmnI	GCTCC	4 cut(s)	161, 370, 413, 481
Lsp1109I	GCAGC	1 cut(s)	471
LweI	GCATC	2 cut(s)	157, 519
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	1 cut(s)	383
MalI	GATC	2 cut(s)	184, 450
MbiI	CCGCTC	1 cut(s)	571
MboI	GATC	2 cut(s)	182, 448
MboII	GAAGA	9 cut(s)	9, 12, 27, 73, 245, 325, 403, 529, 538
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	3 cut(s)	283, 563, 587
MlyI	GAGTC	3 cut(s)	5, 215, 501
MmeI	TCCRAC	2 cut(s)	305, 348
MnlI	CCTC	4 cut(s)	43, 223, 462, 516
MseI	TTAA	2 cut(s)	282, 437
MspI	CCGG	1 cut(s)	596
MspR9I	CCNGG	1 cut(s)	479
Mva1269I	GAATGC	1 cut(s)	487
MvaI	CCWGG	1 cut(s)	479
MwoI	GCNNNNNNNGC	1 cut(s)	153
NdeII	GATC	2 cut(s)	182, 448
NlaIII	CATG	2 cut(s)	71, 323
NlaIV	GGNNCC	2 cut(s)	50, 372
NspV	TTCGAA	1 cut(s)	38
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	487
PfeI	GAWTC	1 cut(s)	463
PkrI	GCNGC	1 cut(s)	486
PleI	GAGTC	3 cut(s)	5, 214, 501
PpsI	GAGTC	3 cut(s)	5, 214, 501
PshBI	ATTAAT	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	477
PspGI	CCWGG	1 cut(s)	477
PspN4I	GGNNCC	2 cut(s)	50, 372
PstNI	CAGNNNCTG	1 cut(s)	484
RsaI	GTAC	2 cut(s)	378, 386
RsaNI	GTAC	2 cut(s)	377, 385
SaqAI	TTAA	2 cut(s)	282, 437
SatI	GCNGC	1 cut(s)	485
Sau3AI	GATC	2 cut(s)	182, 448
SchI	GAGTC	3 cut(s)	5, 215, 501
ScrFI	CCNGG	1 cut(s)	479
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	8 cut(s)	57, 116, 133, 166, 309, 368, 386, 486
SfaNI	GCATC	2 cut(s)	157, 519
SfuI	TTCGAA	1 cut(s)	38
Sse9I	AATT	3 cut(s)	283, 563, 587
SsiI	CCGC	4 cut(s)	222, 403, 532, 571
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	477
StyI	CCWWGG	1 cut(s)	501
TaiI	ACGT	1 cut(s)	386
TaqI	TCGA	1 cut(s)	38
TasI	AATT	3 cut(s)	283, 563, 587
TatI	WGTACW	1 cut(s)	376
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	2 cut(s)	282, 437
Tru9I	TTAA	2 cut(s)	282, 437
TseI	GCWGC	1 cut(s)	484
TspDTI	ATGAA	2 cut(s)	258, 276
TspGWI	ACGGA	1 cut(s)	442
VspI	ATTAAT	1 cut(s)	282
XapI	RAATTY	2 cut(s)	563, 587
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.