Rroxscaffold_1G00049670

G patch domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002748
Physical Location & Seq
Reverse (-)
70043761 .. 70044278
518 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00049670.1

Sequence Viewer

Length: 423 bp
ATGGCGGTTTCAAGTTCATTAACAACCATTAATTCATCCAACATAGGTTTTCGGCTTTTGAAGAAACAAGGTTGGAAAGAGGGAACTGGTCTTGGGATTTCTGAGCAGGGAAGGTTGGAGCCTGTAGCAACCTACGTGAACAATAATAAACTGGGCCTGGGAGCAGACAAATTACAGAAGAAGAAGCTGCGTTCAGAAACCAAGGAATCTCGACTCGCAGCAAAGAAGAGGACGAAGATGCAGGAGTTGGAAAAAAGATTGCAAGAGAAGGAATTTGAGCGCGCCTTTTGTAGAGAGTTCTGGCCAGATAATGTTTTTGACTCAAAACCTGCATCGATATCTTCTCATAAGTCTACTAGTGCGAATGGCCAGAGCGGTGTTATCTTCTCTGTTCTTCCTTTGAACTCATCTGTTCGTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch

Protein Analysis

140

Amino Acids

15.59

Weight (kDa)

10.05

Isoelectric Point (pI)

54.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 13 - 56 4.3e-17 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 337
AccBSI CCGCTC 1 cut(s) 375
AccI GTMKAC 1 cut(s) 353
AccII CGCG 1 cut(s) 282
AciI CCGC 2 cut(s) 5, 375
AcoI YGGCCR 2 cut(s) 302, 367
AcsI RAATTY 1 cut(s) 272
AfaI GTAC 1 cut(s) 418
AgsI TTSAA 3 cut(s) 12, 61, 403
AhlI ACTAGT 1 cut(s) 356
AjnI CCWGG 1 cut(s) 156
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
AoxI GGCC 3 cut(s) 154, 302, 367
ApeKI GCWGC 2 cut(s) 187, 218
ApoI RAATTY 1 cut(s) 272
AseI ATTAAT 1 cut(s) 30
AspLEI GCGC 2 cut(s) 282, 284
AspS9I GGNCC 1 cut(s) 154
BalI TGGCCA 2 cut(s) 304, 369
BbvI GCAGC 2 cut(s) 174, 230
BciT130I CCWGG 1 cut(s) 158
BcuI ACTAGT 1 cut(s) 356
BfaI CTAG 1 cut(s) 357
BfmI CTRYAG 1 cut(s) 123
BfuAI ACCTGC 1 cut(s) 337
BisI GCNGC 2 cut(s) 188, 219
BlsI GCNGC 2 cut(s) 189, 220
Bme1390I CCNGG 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 158
BmrI ACTGGG 1 cut(s) 161
BmsI GCATC 2 cut(s) 228, 341
BmuI ACTGGG 1 cut(s) 161
Bsa29I ATCGAT 1 cut(s) 335
BsaAI YACGTR 2 cut(s) 136, 420
BsaJI CCNNGG 2 cut(s) 157, 201
Bse1I ACTGG 2 cut(s) 91, 156
BseBI CCWGG 1 cut(s) 158
BseCI ATCGAT 1 cut(s) 335
BseDI CCNNGG 2 cut(s) 157, 201
BseGI GGATG 1 cut(s) 35
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 2 cut(s) 91, 156
BsePI GCGCGC 1 cut(s) 280
BseXI GCAGC 2 cut(s) 174, 230
Bsh1236I CGCG 1 cut(s) 282
BshFI GGCC 3 cut(s) 156, 304, 369
BshVI ATCGAT 1 cut(s) 335
BsiWI CGTACG 1 cut(s) 416
BsnI GGCC 3 cut(s) 156, 304, 369
BspACI CCGC 2 cut(s) 5, 375
BspANI GGCC 3 cut(s) 156, 304, 369
BspCNI CTCAG 1 cut(s) 94
BspDI ATCGAT 1 cut(s) 335
BspFNI CGCG 1 cut(s) 282
BspLI GGNNCC 1 cut(s) 120
BspMI ACCTGC 1 cut(s) 337
BsrBI CCGCTC 1 cut(s) 375
BsrI ACTGG 2 cut(s) 91, 156
BssECI CCNNGG 2 cut(s) 157, 201
BssHII GCGCGC 1 cut(s) 280
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 221
BstBAI YACGTR 2 cut(s) 136, 420
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 35
BstFNI CGCG 1 cut(s) 282
BstHHI GCGC 2 cut(s) 282, 284
BstNI CCWGG 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 156
BstSFI CTRYAG 1 cut(s) 123
BstSNI TACGTA 1 cut(s) 420
BstUI CGCG 1 cut(s) 282
BstV1I GCAGC 2 cut(s) 174, 230
Bsu15I ATCGAT 1 cut(s) 335
BsuRI GGCC 3 cut(s) 156, 304, 369
BsuTUI ATCGAT 1 cut(s) 335
BtsCI GGATG 1 cut(s) 35
BveI ACCTGC 1 cut(s) 337
Cac8I GCNNGC 1 cut(s) 282
CfoI GCGC 2 cut(s) 282, 284
Cfr13I GGNCC 1 cut(s) 154
ClaI ATCGAT 1 cut(s) 335
Csp6I GTAC 1 cut(s) 417
CviJI RGCY 6 cut(s) 55, 121, 156, 187, 304, 369
CviKI_1 RGCY 6 cut(s) 55, 121, 156, 187, 304, 369
CviQI GTAC 1 cut(s) 417
DdeI CTNAG 1 cut(s) 102
EaeI YGGCCR 2 cut(s) 302, 367
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
Eco105I TACGTA 1 cut(s) 420
Eco130I CCWWGG 1 cut(s) 201
Eco32I GATATC 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 156
EcoRV GATATC 1 cut(s) 339
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaiI YATR 2 cut(s) 44, 348
FblI GTMKAC 1 cut(s) 353
Fnu4HI GCNGC 2 cut(s) 188, 219
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 2 cut(s) 188, 219
FspBI CTAG 1 cut(s) 357
GlaI GCGC 2 cut(s) 281, 283
GluI GCNGC 2 cut(s) 188, 219
HaeIII GGCC 3 cut(s) 156, 304, 369
HhaI GCGC 2 cut(s) 282, 284
Hin6I GCGC 2 cut(s) 280, 282
HinP1I GCGC 2 cut(s) 280, 282
HinfI GANTC 3 cut(s) 206, 213, 320
Hpy166II GTNNAC 2 cut(s) 139, 354
Hpy188I TCNGA 2 cut(s) 103, 196
Hpy188III TCNNGA 1 cut(s) 210
Hpy8I GTNNAC 2 cut(s) 139, 354
HpyAV CCTTC 2 cut(s) 105, 262
HpyCH4IV ACGT 2 cut(s) 135, 419
HpyCH4V TGCA 3 cut(s) 241, 262, 332
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 2 cut(s) 135, 419
HspAI GCGC 2 cut(s) 280, 282
LmnI GCTCC 2 cut(s) 118, 161
Lsp1109I GCAGC 2 cut(s) 174, 230
LweI GCATC 2 cut(s) 228, 341
MaeI CTAG 1 cut(s) 357
MaeII ACGT 2 cut(s) 135, 419
MbiI CCGCTC 1 cut(s) 375
MboII GAAGA 8 cut(s) 73, 190, 193, 238, 247, 333, 376, 386
MlsI TGGCCA 2 cut(s) 304, 369
MluCI AATT 3 cut(s) 31, 170, 272
MluNI TGGCCA 2 cut(s) 304, 369
MlyI GAGTC 2 cut(s) 207, 314
MmeI TCCRAC 4 cut(s) 53, 63, 96, 228
MnlI CCTC 2 cut(s) 73, 222
Mox20I TGGCCA 2 cut(s) 304, 369
MscI TGGCCA 2 cut(s) 304, 369
MseI TTAA 2 cut(s) 20, 30
Msp20I TGGCCA 2 cut(s) 304, 369
MspR9I CCNGG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 158
MvnI CGCG 1 cut(s) 282
NlaIV GGNNCC 1 cut(s) 120
PauI GCGCGC 1 cut(s) 280
PfeI GAWTC 1 cut(s) 206
Pfl23II CGTACG 1 cut(s) 416
PkrI GCNGC 2 cut(s) 189, 220
PleI GAGTC 2 cut(s) 207, 314
PpsI GAGTC 2 cut(s) 207, 314
Ppu21I YACGTR 2 cut(s) 136, 420
PshBI ATTAAT 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
PspLI CGTACG 1 cut(s) 416
PspN4I GGNNCC 1 cut(s) 120
PspPI GGNCC 1 cut(s) 154
PteI GCGCGC 1 cut(s) 280
RsaI GTAC 1 cut(s) 418
RsaNI GTAC 1 cut(s) 417
SaqAI TTAA 2 cut(s) 20, 30
SatI GCNGC 2 cut(s) 188, 219
Sau96I GGNCC 1 cut(s) 154
SchI GAGTC 2 cut(s) 207, 314
ScrFI CCNGG 1 cut(s) 158
SetI ASST 8 cut(s) 49, 73, 116, 134, 138, 189, 331, 422
SfaNI GCATC 2 cut(s) 228, 341
SfcI CTRYAG 1 cut(s) 123
SnaBI TACGTA 1 cut(s) 420
SpeI ACTAGT 1 cut(s) 356
Sse9I AATT 3 cut(s) 31, 170, 272
SsiI CCGC 2 cut(s) 5, 375
SspMI CTAG 1 cut(s) 357
StyD4I CCNGG 1 cut(s) 156
StyI CCWWGG 1 cut(s) 201
TaiI ACGT 2 cut(s) 138, 422
TaqI TCGA 2 cut(s) 211, 335
TasI AATT 3 cut(s) 31, 170, 272
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 2 cut(s) 20, 30
Tru9I TTAA 2 cut(s) 20, 30
TseI GCWGC 2 cut(s) 187, 218
TspDTI ATGAA 2 cut(s) 6, 24
VspI ATTAAT 1 cut(s) 30
XapI RAATTY 1 cut(s) 272
XmiI GTMKAC 1 cut(s) 353
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.