RLG00000033233

G patch domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002748
Physical Location & Seq
Forward (+)
24689531 .. 24690731
1201 bp
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UTR
Exon/CDS
Intron
RLM00000033233

Sequence Viewer

Length: 429 bp
ATGGCGGTTTCAAGTGCATTAACAACCATTAATTCATCCAACATAGGTTTTCGGCTTTTGAAGAAACAAGGTTGGAAAGAGGGAACTGGTCTTGGGATTTCTGAGCAGGGAAGGTTGGAGCCTGTAGCAACCTGCGTGAAGAATAATAAGCAGGGCCTGGGAGCAGACAAACTACAGAAGAAGAAACTGCGTTCAGAAACTAAGGAATCTCGACTCGCAGCAAAGAAGAGGACGAAGATGGAGGAGTTGGAAAAAAGATTGCAAGAGAAGGAATTTGAGCGCGCCTTTTGTAGGGAGTTCTGGCCGGATAATGCATCTATGTTATTACACTTGAAACATACTAATGGATTCGGGTCCATAAGGATCGAAGAGTACGTCTATAAAATTGGCGAGTACAAACCTCGACCTAATGAAAGTGCCAAACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch

Protein Analysis

143

Amino Acids

16.23

Weight (kDa)

9.78

Isoelectric Point (pI)

46.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 13 - 56 1e-16 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 140
AccII CGCG 1 cut(s) 282
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 371
AcoI YGGCCR 1 cut(s) 302
AcsI RAATTY 1 cut(s) 272
AfaI GTAC 2 cut(s) 374, 395
AfiI CCNNNNNNNGG 1 cut(s) 291
AgsI TTSAA 3 cut(s) 12, 61, 334
AjnI CCWGG 1 cut(s) 156
AlwI GGATC 1 cut(s) 371
AlwNI CAGNNNCTG 1 cut(s) 157
AoxI GGCC 2 cut(s) 154, 302
ApeKI GCWGC 1 cut(s) 218
ApoI RAATTY 1 cut(s) 272
ArsI GACNNNNNNTTYG 2 cut(s) 360, 392
AseI ATTAAT 1 cut(s) 30
AspLEI GCGC 2 cut(s) 282, 284
AspS9I GGNCC 2 cut(s) 154, 354
AvaII GGWCC 1 cut(s) 354
BbvI GCAGC 1 cut(s) 230
BccI CCATC 1 cut(s) 232
BciT130I CCWGG 1 cut(s) 158
BfmI CTRYAG 2 cut(s) 123, 173
BfuAI ACCTGC 1 cut(s) 140
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
Bme1390I CCNGG 1 cut(s) 158
Bme18I GGWCC 1 cut(s) 354
BmgT120I GGNCC 2 cut(s) 154, 354
BmiI GGNNCC 2 cut(s) 120, 355
BmrFI CCNGG 1 cut(s) 158
BmsI GCATC 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 157
Bsc4I CCNNNNNNNGG 1 cut(s) 291
Bse1I ACTGG 1 cut(s) 91
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 1 cut(s) 157
BseGI GGATG 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 291
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 1 cut(s) 91
BsePI GCGCGC 1 cut(s) 280
BseRI GAGGAG 1 cut(s) 257
BseXI GCAGC 1 cut(s) 230
Bsh1236I CGCG 1 cut(s) 282
BshFI GGCC 2 cut(s) 156, 304
BsiSI CCGG 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 291
BsnI GGCC 2 cut(s) 156, 304
Bsp143I GATC 1 cut(s) 363
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 156, 304
BspCNI CTCAG 1 cut(s) 94
BspFNI CGCG 1 cut(s) 282
BspLI GGNNCC 2 cut(s) 120, 355
BspMI ACCTGC 1 cut(s) 140
BspPI GGATC 1 cut(s) 371
BsrI ACTGG 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 157
BssHII GCGCGC 1 cut(s) 280
BssMI GATC 1 cut(s) 363
Bst2UI CCWGG 1 cut(s) 158
Bst6I CTCTTC 2 cut(s) 221, 363
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 2 cut(s) 102, 201
BstENI CCTNNNNNAGG 1 cut(s) 289
BstF5I GGATG 1 cut(s) 35
BstFNI CGCG 1 cut(s) 282
BstHHI GCGC 2 cut(s) 282, 284
BstKTI GATC 1 cut(s) 366
BstMBI GATC 1 cut(s) 363
BstNI CCWGG 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 156
BstSFI CTRYAG 2 cut(s) 123, 173
BstUI CGCG 1 cut(s) 282
BstV1I GCAGC 1 cut(s) 230
BsuRI GGCC 2 cut(s) 156, 304
BtsCI GGATG 1 cut(s) 35
BveI ACCTGC 1 cut(s) 140
Cac8I GCNNGC 1 cut(s) 282
CaiI CAGNNNCTG 1 cut(s) 157
CfoI GCGC 2 cut(s) 282, 284
Cfr13I GGNCC 2 cut(s) 154, 354
Csp6I GTAC 2 cut(s) 373, 394
CviJI RGCY 4 cut(s) 55, 121, 156, 304
CviKI_1 RGCY 4 cut(s) 55, 121, 156, 304
CviQI GTAC 2 cut(s) 373, 394
DdeI CTNAG 2 cut(s) 102, 201
DpnI GATC 1 cut(s) 365
DpnII GATC 1 cut(s) 363
EaeI YGGCCR 1 cut(s) 302
Eam1104I CTCTTC 2 cut(s) 221, 363
EarI CTCTTC 2 cut(s) 221, 363
Eco47I GGWCC 1 cut(s) 354
EcoNI CCTNNNNNAGG 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 156
EcoT22I ATGCAT 1 cut(s) 316
FaiI YATR 6 cut(s) 44, 320, 339, 359, 381, 427
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 1 cut(s) 219
GlaI GCGC 2 cut(s) 281, 283
GluI GCNGC 1 cut(s) 219
HaeIII GGCC 2 cut(s) 156, 304
HapII CCGG 1 cut(s) 305
HhaI GCGC 2 cut(s) 282, 284
Hin6I GCGC 2 cut(s) 280, 282
HinP1I GCGC 2 cut(s) 280, 282
HinfI GANTC 3 cut(s) 206, 213, 348
HpaII CCGG 1 cut(s) 305
Hpy188I TCNGA 2 cut(s) 103, 196
Hpy188III TCNNGA 1 cut(s) 210
HpyAV CCTTC 2 cut(s) 105, 262
HpyCH4IV ACGT 1 cut(s) 375
HpyCH4V TGCA 3 cut(s) 17, 262, 314
HpyF3I CTNAG 2 cut(s) 102, 201
HpySE526I ACGT 1 cut(s) 375
HspAI GCGC 2 cut(s) 280, 282
Kzo9I GATC 1 cut(s) 363
LmnI GCTCC 2 cut(s) 118, 161
LpnPI CCDG 9 cut(s) 72, 92, 135, 137, 143, 145, 170, 286, 318
Lsp1109I GCAGC 1 cut(s) 230
LweI GCATC 1 cut(s) 323
MaeII ACGT 1 cut(s) 375
MalI GATC 1 cut(s) 365
MboI GATC 1 cut(s) 363
MboII GAAGA 7 cut(s) 73, 151, 190, 193, 238, 247, 380
MluCI AATT 3 cut(s) 31, 272, 384
MlyI GAGTC 1 cut(s) 207
MmeI TCCRAC 4 cut(s) 53, 63, 96, 228
MnlI CCTC 4 cut(s) 73, 222, 235, 411
Mph1103I ATGCAT 1 cut(s) 316
MseI TTAA 2 cut(s) 20, 30
MslI CAYNNNNRTG 1 cut(s) 342
MspI CCGG 1 cut(s) 305
MspR9I CCNGG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 158
MvnI CGCG 1 cut(s) 282
NdeII GATC 1 cut(s) 363
NlaIV GGNNCC 2 cut(s) 120, 355
NsiI ATGCAT 1 cut(s) 316
PauI GCGCGC 1 cut(s) 280
PcsI WCGNNNNNNNCGW 1 cut(s) 372
PfeI GAWTC 2 cut(s) 206, 348
PkrI GCNGC 1 cut(s) 220
PleI GAGTC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 207
PshBI ATTAAT 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 2 cut(s) 120, 355
PspPI GGNCC 2 cut(s) 154, 354
PstNI CAGNNNCTG 1 cut(s) 157
PteI GCGCGC 1 cut(s) 280
RsaI GTAC 2 cut(s) 374, 395
RsaNI GTAC 2 cut(s) 373, 394
RseI CAYNNNNRTG 1 cut(s) 342
SaqAI TTAA 2 cut(s) 20, 30
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 1 cut(s) 363
Sau96I GGNCC 2 cut(s) 154, 354
SchI GAGTC 1 cut(s) 207
ScrFI CCNGG 1 cut(s) 158
SetI ASST 7 cut(s) 49, 73, 116, 134, 378, 403, 409
SfaNI GCATC 1 cut(s) 323
SfcI CTRYAG 2 cut(s) 123, 173
SinI GGWCC 1 cut(s) 354
SmiMI CAYNNNNRTG 1 cut(s) 342
Sse9I AATT 3 cut(s) 31, 272, 384
SsiI CCGC 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 156
TaiI ACGT 1 cut(s) 378
TaqI TCGA 3 cut(s) 211, 366, 403
TasI AATT 3 cut(s) 31, 272, 384
TatI WGTACW 1 cut(s) 393
TfiI GAWTC 2 cut(s) 206, 348
Tru1I TTAA 2 cut(s) 20, 30
Tru9I TTAA 2 cut(s) 20, 30
TseI GCWGC 1 cut(s) 218
TspDTI ATGAA 2 cut(s) 24, 426
VpaK11BI GGWCC 1 cut(s) 354
VspI ATTAAT 1 cut(s) 30
XagI CCTNNNNNAGG 1 cut(s) 289
XapI RAATTY 1 cut(s) 272
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.