Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002748

Physical Location & Seq

Genomic Coordinates Forward (+)

32688463 .. 32692515

Gene Structure 4053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G351400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGGAGAGGACGAGCCGGTGACGGTGGGCTCATCTTCTTCAGGCATAGACTCCTCCAATATTGGGTTTCAGCTTTTGAAGAAGCAGGGCTGGACACAAGGAACGGGTCTTGGTGCTTCCCAGCAGGGTAGGCTAGAGCCTGTTAAAGCTTACTTGAAGGACAACAAACGAGGCTTAGGAGCAGATACATCAAGAAATAAATTCTTTCCGGTTTCTGAAAATTCAGATTCTAGTGGAAACGATGAAAAGAACAATAGCTTCGCGCATTTGGTTCAGGAGGAAGAAGGTATGGGAAAAGGCATGGTGACTTCAAGTGGTTCATCAATAGCCATCAATCCCTCCAATATAGGCTTTCAGCTTTTGAAGAAACATGGTTGGAAAGAAGGAACTGGTCTTGGGATTTCTGAGCAGGGAAGGATAGAGCCTGTACAAGCATACTTGAAGAATAATAAACGGGGCCTGGGAGCAGATAAATTACAGAAGGCACTAAATCCCCCTGATTCTACTGTCTTGAATGGAAAAAATGACCAGGAGCTGCATTCAAAAAAAGGCAAGGGACTCTCGAAGAAGATGAAGAAAGAGCAGGAGTTAGAGAAAAGATTGCAGGAGAGGGAATTTGAGCGTGCCTTTCATAGGGAGTTTTGGCCAGATAACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch

Protein Analysis

220

Amino Acids

24.03

Weight (kDa)

9.12

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52350 AT5G08535 AT5G08535 AT5G08535 AT5G08535
fragaria_vesca	FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311
malus_domestica	MD13G1001300.v1.1
prunus_persica	Prupe.1G351400_v2.0.a1 Prupe.1G351400_v2.0.a1
pyrus_communis	pycom13g00100
rosa_chinensis	RchiOBHm_Chr4g0447151 RchiOBHm_Chr5g0030611
rosa_laevigata	RLG00000005600 RLG00000033233
rosa_multiflora	Rmu_sc0003238.1_g000010 Rmu_sc0008328.1_g000005 Rmu_ssc0000344.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049670 Rroxscaffold_5G00387540
rosa_rugosa	Rorug04G0378500 Rorug04G0378600 Rorug05G0118900
rosa_samantha	Rh4AG439800 Rh4BG448900 Rh4CG465900 Rh4DG447300 Rh5CG233800 Rh5DG214800
rosa_wichuraiana	Rw4G037630 Rw5G019320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	263
AclI	AACGTT	1 cut(s)	654
AcoI	YGGCCR	1 cut(s)	644
AcsI	RAATTY	3 cut(s)	200, 220, 614
AcuI	CTGAAG	1 cut(s)	24
AfaI	GTAC	1 cut(s)	429
AfiI	CCNNNNNNNGG	2 cut(s)	63, 633
AgsI	TTSAA	7 cut(s)	79, 157, 312, 364, 442, 514, 543
AjnI	CCWGG	2 cut(s)	459, 528
AluBI	AGCT	5 cut(s)	73, 149, 258, 358, 535
AluI	AGCT	5 cut(s)	73, 149, 258, 358, 535
AlwNI	CAGNNNCTG	1 cut(s)	535
AoxI	GGCC	2 cut(s)	457, 644
ApeKI	GCWGC	1 cut(s)	535
ApoI	RAATTY	3 cut(s)	200, 220, 614
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	1 cut(s)	457
AsuHPI	GGTGA	2 cut(s)	31, 316
BalI	TGGCCA	1 cut(s)	646
BanII	GRGCYC	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	522
BccI	CCATC	1 cut(s)	338
BciT130I	CCWGG	2 cut(s)	461, 530
BfaI	CTAG	2 cut(s)	134, 231
BisI	GCNGC	1 cut(s)	536
BlsI	GCNGC	1 cut(s)	537
Bme1390I	CCNGG	2 cut(s)	461, 530
BmgT120I	GGNCC	1 cut(s)	457
BmiI	GGNNCC	1 cut(s)	458
BmrFI	CCNGG	2 cut(s)	461, 530
Bpu10I	CCTNAGC	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	460
BsaWI	WCCGGW	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 633
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	394
BseBI	CCWGG	2 cut(s)	461, 530
BseDI	CCNNGG	1 cut(s)	460
BseLI	CCNNNNNNNGG	2 cut(s)	63, 633
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	1 cut(s)	394
BseRI	GAGGAG	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	522
BseYI	CCCAGC	1 cut(s)	120
Bsh1236I	CGCG	1 cut(s)	263
BshFI	GGCC	2 cut(s)	459, 646
BsiSI	CCGG	2 cut(s)	17, 209
BslFI	GGGAC	1 cut(s)	570
BslI	CCNNNNNNNGG	2 cut(s)	63, 633
BsmFI	GGGAC	1 cut(s)	570
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	2 cut(s)	459, 646
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp1407I	TGTACA	1 cut(s)	427
BspANI	GGCC	2 cut(s)	459, 646
BspCNI	CTCAG	1 cut(s)	397
BspFNI	CGCG	1 cut(s)	263
BspLI	GGNNCC	1 cut(s)	458
BsrFI	RCCGGY	1 cut(s)	16
BsrGI	TGTACA	1 cut(s)	427
BsrI	ACTGG	1 cut(s)	394
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	1 cut(s)	460
Bst2UI	CCWGG	2 cut(s)	461, 530
Bst4CI	ACNGT	2 cut(s)	25, 508
BstAUI	TGTACA	1 cut(s)	427
BstC8I	GCNNGC	1 cut(s)	624
BstDEI	CTNAG	2 cut(s)	175, 405
BstENI	CCTNNNNNAGG	1 cut(s)	631
BstFNI	CGCG	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BstNI	CCWGG	2 cut(s)	461, 530
BstSCI	CCNGG	2 cut(s)	459, 528
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	1 cut(s)	522
BsuRI	GGCC	2 cut(s)	459, 646
Cac8I	GCNNGC	1 cut(s)	624
CaiI	CAGNNNCTG	1 cut(s)	535
CfoI	GCGC	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	457
Csp6I	GTAC	1 cut(s)	428
CviAII	CATG	2 cut(s)	301, 371
CviQI	GTAC	1 cut(s)	428
DdeI	CTNAG	2 cut(s)	175, 405
EaeI	YGGCCR	1 cut(s)	644
Eco24I	GRGCYC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	24
EcoNI	CCTNNNNNAGG	1 cut(s)	631
EcoO109I	RGGNCCY	1 cut(s)	457
EcoRII	CCWGG	2 cut(s)	459, 528
EcoT38I	GRGCYC	1 cut(s)	32
FaeI	CATG	2 cut(s)	304, 374
FaiI	YATR	7 cut(s)	47, 290, 302, 347, 372, 436, 633
FaqI	GGGAC	1 cut(s)	570
FatI	CATG	2 cut(s)	300, 370
Fnu4HI	GCNGC	1 cut(s)	536
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	536
FspBI	CTAG	2 cut(s)	134, 231
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	1 cut(s)	536
GsaI	CCCAGC	1 cut(s)	124
HaeIII	GGCC	2 cut(s)	459, 646
HapII	CCGG	2 cut(s)	17, 209
HhaI	GCGC	1 cut(s)	265
Hin1II	CATG	2 cut(s)	304, 374
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HindIII	AAGCTT	1 cut(s)	147
HinfI	GANTC	4 cut(s)	50, 227, 500, 558
HpaII	CCGG	2 cut(s)	17, 209
HphI	GGTGA	2 cut(s)	31, 316
Hpy188I	TCNGA	3 cut(s)	217, 226, 406
Hpy188III	TCNNGA	4 cut(s)	192, 275, 511, 562
HpyAV	CCTTC	5 cut(s)	151, 278, 377, 408, 475
HpyCH4III	ACNGT	2 cut(s)	25, 508
HpyCH4IV	ACGT	1 cut(s)	654
HpyCH4V	TGCA	2 cut(s)	538, 604
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
HpyF3I	CTNAG	2 cut(s)	175, 405
HpySE526I	ACGT	1 cut(s)	654
Hsp92II	CATG	2 cut(s)	304, 374
HspAI	GCGC	1 cut(s)	263
LmnI	GCTCC	3 cut(s)	179, 464, 532
Lsp1109I	GCAGC	1 cut(s)	522
MaeI	CTAG	2 cut(s)	134, 231
MaeII	ACGT	1 cut(s)	654
MaeIII	GTNAC	2 cut(s)	19, 304
MboII	GAAGA	9 cut(s)	27, 30, 91, 293, 376, 454, 577, 580, 586
MhlI	GDGCHC	1 cut(s)	32
MlsI	TGGCCA	1 cut(s)	646
MluCI	AATT	4 cut(s)	200, 220, 473, 614
MluNI	TGGCCA	1 cut(s)	646
MlyI	GAGTC	2 cut(s)	44, 552
MmeI	TCCRAC	1 cut(s)	356
MnlI	CCTC	5 cut(s)	64, 164, 271, 349, 603
Mox20I	TGGCCA	1 cut(s)	646
MscI	TGGCCA	1 cut(s)	646
MseI	TTAA	1 cut(s)	144
Msp20I	TGGCCA	1 cut(s)	646
MspI	CCGG	2 cut(s)	17, 209
MspR9I	CCNGG	2 cut(s)	461, 530
Mva1269I	GAATGC	1 cut(s)	538
MvaI	CCWGG	2 cut(s)	461, 530
MvnI	CGCG	1 cut(s)	263
MwoI	GCNNNNNNNGC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	304, 374
NlaIV	GGNNCC	1 cut(s)	458
NmuCI	GTSAC	2 cut(s)	19, 304
PctI	GAATGC	1 cut(s)	538
PfeI	GAWTC	2 cut(s)	227, 500
PkrI	GCNGC	1 cut(s)	537
PleI	GAGTC	2 cut(s)	44, 552
PpsI	GAGTC	2 cut(s)	44, 552
Psp1406I	AACGTT	1 cut(s)	654
Psp6I	CCWGG	2 cut(s)	459, 528
PspFI	CCCAGC	1 cut(s)	120
PspGI	CCWGG	2 cut(s)	459, 528
PspN4I	GGNNCC	1 cut(s)	458
PspPI	GGNCC	1 cut(s)	457
PstNI	CAGNNNCTG	1 cut(s)	535
RsaI	GTAC	1 cut(s)	429
RsaNI	GTAC	1 cut(s)	428
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	1 cut(s)	536
Sau96I	GGNCC	1 cut(s)	457
SchI	GAGTC	2 cut(s)	44, 552
ScrFI	CCNGG	2 cut(s)	461, 530
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	7 cut(s)	75, 151, 260, 289, 360, 537, 657
Sse9I	AATT	4 cut(s)	200, 220, 473, 614
SspI	AATATT	1 cut(s)	61
SspMI	CTAG	2 cut(s)	134, 231
StyD4I	CCNGG	2 cut(s)	459, 528
TaaI	ACNGT	2 cut(s)	25, 508
TaiI	ACGT	1 cut(s)	657
TaqI	TCGA	1 cut(s)	563
TasI	AATT	4 cut(s)	200, 220, 473, 614
TatI	WGTACW	1 cut(s)	427
TfiI	GAWTC	2 cut(s)	227, 500
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TseFI	GTSAC	2 cut(s)	19, 304
TseI	GCWGC	1 cut(s)	535
Tsp45I	GTSAC	2 cut(s)	19, 304
TspDTI	ATGAA	4 cut(s)	258, 309, 587, 620
XagI	CCTNNNNNAGG	1 cut(s)	631
XapI	RAATTY	3 cut(s)	200, 220, 614
XspI	CTAG	2 cut(s)	134, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.