Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002585

Physical Location & Seq

Genomic Coordinates Reverse (-)

3089278 .. 3093020

Gene Structure 3743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G09900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGGAGACAGCGGGAAGCTTGAGGCAACGATAGATCGGCTTCTGAATGAAGAGAAGCAGATGAGACTCGCCGAAAACGTAGCCGGTACAAGGAAAGCCGCCACTGAGATTCTTCAGCTTTGTTTCGATGCTAAGGATTGGAAACTTCTGAATGAGCAGATTCTCAATCTCTCTAAGAAACGTGGTCAGCTCAAACAGGCTGTGCAATCCATGGTGCAGCAAGCAATGCAGTATATCGATCAGACACCAGACATTGAAACTCGGATAGAGCTTATCAAGACGCTGAACAATGTATCTGCTGGAAAGATATATGTTGAAATCGAGAGGGCACGTCTCACCAAGAAACTTGCTAAGATTAAGGAAGAACAGGGTCAGATAGCTGAAGCTGCAGATCTTATGCAAGAAGTTGCTGTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGCATTTATCCTTGAACAAGTTCGCTTGTGCTTGGATCGTCAAGATTTTGTTCGTGCACAAATCTTATCTAGGAAGATCAATCCTAGAGTTTTTGACGCAGATACAAAAAAAGATAAGAAGAAACCTAAGGAAGGTGATAACATGGTAGAAGAGGCTCCTGCTGATATACCAACCCTTTTGGAGCTTAAGCGAATTTACTACGAGCTTATGATTCGGTACTATTCTCATAACAATGAGTACATTGAAATCTGCCGTAGCTACAAGGCGATATATGATATCCCTTCAGTAAAAGAAACTCCGGAGCAGTGGATTCCGGTCCTGAGGAAGATCTGCTGGTTCTTGGTCTTGGCACCTCATGACCCAATGCAATCAAGCTTGCTCAATGCAACTCTGGAAGACAAGAATTTATCAGAAATCCCTGATTTCAAGATGCTTCTAAAACAGGTAGTGACAATGGAGGTTATTCAATGGACATCTCTGTGGAACAAATACAAGGATGAGTTCGAGAAAGAGAAAAGCATGATTGGAGGTTCTTTGGGTGACAAAGCTGGTGAAGATCTGAAACTGAGAATCATCGAACATAATATCCTCGTTGTCTCAAAGTACTACGCAAGGATAACCTTAAAGAGACTTGCCGAGCTTTTATGCCTGAGCATGGAGGAGGCGGAGAAGCATCTATCGGAGATGGTAGTGTCAAAAGCACTGATTGCAAAAATAGACAGACCATCTGGAATTGTGTGCTTCCAGATCGCAAAGGACAGCAACGAGATTCTAAACTCGTGGGCAGGGAATTTGGAGAAGCTTCTAGATCTTGTGGAAAAGAGTTGCCACCAAATTCACAAGGAAACCATGGTTCACAAAGCCGCTCTCAGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031595 GO:0031974 GO:0031981 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0051603 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

442

Amino Acids

50.84

Weight (kDa)

7.05

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSMD12-CSN4_N	PF22241	10 - 190	5.3e-68	PSMD12/CSN4, N-terminal
PSMD12-CSN4_N	PF22241	211 - 248	1.4e-08	PSMD12/CSN4, N-terminal
PCI	PF01399	334 - 399	2.2e-17	PCI domain
RPN5_C	PF18098	405 - 437	1.1e-11	26S proteasome regulatory subunit RPN5 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09900 AT5G09900 AT5G64760 AT5G64760 AT5G64760
fragaria_vesca	FvH4_1g23340 FvH4_1g23340 FvH4_1g23340 FvH4_1g23340 FvH4_1g23340 FvH4_5g27840
malus_domestica	MD02G1223100.v1.1 MD07G1091700.v1.1
prunus_persica	Prupe.2G117100_v2.0.a1 Prupe.2G119800_v2.0.a1
pyrus_communis	pycom07g07500
rosa_chinensis	RchiOBHm_Chr2g0118191 RchiOBHm_Chr7g0219741
rosa_laevigata	RLG00000002273 RLG00000018402
rosa_multiflora	Rmu_sc0001925.1_g000001 Rmu_sc0005014.1_g000001 Rmu_sc0007335.1_g000004
rosa_roxburghii	Rroxscaffold_2G00125830 Rroxscaffold_3G00239890
rosa_rugosa	Rorug02G0217200 Rorug07G0187400.1 Rorug07G0187500
rosa_samantha	Rh2AG273400 Rh2BG285600 Rh2DG281400 Rh2DG299400 Rh7AG331200 Rh7BG321000 Rh7CG348600 Rh7DG326700
rosa_wichuraiana	Rw2G021620 Rw2G021640 Rw2G021760 Rw7G027880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	799
AccBSI	CCGCTC	1 cut(s)	1316
AccIII	TCCGGA	1 cut(s)	748
AciI	CCGC	4 cut(s)	12, 99, 1115, 1314
AclWI	GGATC	1 cut(s)	492
AcsI	RAATTY	4 cut(s)	642, 853, 1240, 1284
AcuI	CTGAAG	3 cut(s)	98, 402, 717
AfaI	GTAC	4 cut(s)	88, 668, 689, 1055
AfiI	CCNNNNNNNGG	3 cut(s)	90, 581, 1105
AflII	CTTAAG	1 cut(s)	635
AgsI	TTSAA	6 cut(s)	257, 317, 464, 695, 877, 917
AjiI	CACGTC	1 cut(s)	332
AloI	GAACNNNNNNTCC	2 cut(s)	1020, 1052
Alw21I	GWGCWC	1 cut(s)	508
Alw26I	GTCTC	5 cut(s)	58, 338, 410, 1051, 1072
Alw44I	GTGCAC	1 cut(s)	504
AlwI	GGATC	1 cut(s)	492
Aor13HI	TCCGGA	1 cut(s)	748
ApaLI	GTGCAC	1 cut(s)	504
ApeKI	GCWGC	2 cut(s)	217, 386
ApoI	RAATTY	4 cut(s)	642, 853, 1240, 1284
Asp700I	GAANNNNTTC	1 cut(s)	468
AspS9I	GGNCC	1 cut(s)	766
AsuHPI	GGTGA	4 cut(s)	328, 596, 1001, 1013
AvaII	GGWCC	1 cut(s)	766
AxyI	CCTNAGG	2 cut(s)	576, 770
BaeGI	GKGCMC	2 cut(s)	331, 508
BanI	GGYRCC	1 cut(s)	799
BauI	CACGAG	1 cut(s)	1228
BbsI	GAAGAC	1 cut(s)	852
Bbv12I	GWGCWC	1 cut(s)	508
BbvI	GCAGC	2 cut(s)	229, 373
BccI	CCATC	2 cut(s)	1129, 1183
BceAI	ACGGC	1 cut(s)	687
BcoDI	GTCTC	5 cut(s)	58, 338, 410, 1051, 1072
BfaI	CTAG	3 cut(s)	519, 534, 1256
BfmI	CTRYAG	1 cut(s)	387
BfrI	CTTAAG	1 cut(s)	635
BglII	AGATCT	4 cut(s)	391, 777, 1006, 1258
BisI	GCNGC	4 cut(s)	99, 218, 387, 1314
BlsI	GCNGC	4 cut(s)	100, 219, 388, 1315
BmcAI	AGTACT	1 cut(s)	1055
Bme18I	GGWCC	1 cut(s)	766
BmgBI	CACGTC	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	766
BmiI	GGNNCC	2 cut(s)	606, 801
BmsI	GCATC	3 cut(s)	118, 870, 1132
BpiI	GAAGAC	1 cut(s)	852
Bpu10I	CCTNAGC	2 cut(s)	132, 1100
BpuEI	CTTGAG	1 cut(s)	41
Bsa29I	ATCGAT	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	210, 1299
BsaWI	WCCGGW	2 cut(s)	748, 763
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 581, 1105
Bse118I	RCCGGY	1 cut(s)	83
Bse21I	CCTNAGG	2 cut(s)	576, 770
Bse3DI	GCAATG	1 cut(s)	231
BseAI	TCCGGA	1 cut(s)	748
BseCI	ATCGAT	1 cut(s)	237
BseDI	CCNNGG	2 cut(s)	210, 1299
BseGI	GGATG	1 cut(s)	952
BseLI	CCNNNNNNNGG	3 cut(s)	90, 581, 1105
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	5 cut(s)	96, 432, 761, 1007, 1091
BseRI	GAGGAG	1 cut(s)	1124
BseSI	GKGCMC	2 cut(s)	331, 508
BseXI	GCAGC	2 cut(s)	229, 373
BsgI	GTGCAG	1 cut(s)	236
BshNI	GGYRCC	1 cut(s)	799
BshVI	ATCGAT	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	508
BsiSI	CCGG	3 cut(s)	84, 749, 764
BslI	CCNNNNNNNGG	3 cut(s)	90, 581, 1105
BsmAI	GTCTC	5 cut(s)	58, 338, 410, 1051, 1072
BsmBI	CGTCTC	1 cut(s)	338
Bsp1286I	GDGCHC	2 cut(s)	331, 508
Bsp13I	TCCGGA	1 cut(s)	748
Bsp143I	GATC	9 cut(s)	34, 238, 391, 484, 525, 777, 1006, 1197, 1258
Bsp19I	CCATGG	2 cut(s)	210, 1299
BspACI	CCGC	4 cut(s)	12, 99, 1115, 1314
BspCNI	CTCAG	5 cut(s)	97, 433, 762, 1008, 1092
BspDI	ATCGAT	1 cut(s)	237
BspEI	TCCGGA	1 cut(s)	748
BspHI	TCATGA	1 cut(s)	805
BspLI	GGNNCC	2 cut(s)	606, 801
BspMAI	CTGCAG	1 cut(s)	391
BspPI	GGATC	1 cut(s)	492
BspT107I	GGYRCC	1 cut(s)	799
BspTI	CTTAAG	1 cut(s)	635
BsrBI	CCGCTC	1 cut(s)	1316
BsrDI	GCAATG	1 cut(s)	231
BsrFI	RCCGGY	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	2 cut(s)	210, 1299
BssMI	GATC	9 cut(s)	34, 238, 391, 484, 525, 777, 1006, 1197, 1258
BssSI	CACGAG	1 cut(s)	1228
BssT1I	CCWWGG	2 cut(s)	210, 1299
Bst2BI	CACGAG	1 cut(s)	1228
Bst6I	CTCTTC	2 cut(s)	45, 594
BstAFI	CTTAAG	1 cut(s)	635
BstAPI	GCANNNNNTGC	2 cut(s)	226, 1157
BstC8I	GCNNGC	2 cut(s)	222, 827
BstDSI	CCRYGG	2 cut(s)	210, 1299
BstENI	CCTNNNNNAGG	1 cut(s)	579
BstF5I	GGATG	1 cut(s)	952
BstKTI	GATC	9 cut(s)	37, 241, 394, 487, 528, 780, 1009, 1200, 1261
BstMAI	GTCTC	5 cut(s)	58, 338, 410, 1051, 1072
BstMBI	GATC	9 cut(s)	34, 238, 391, 484, 525, 777, 1006, 1197, 1258
BstMWI	GCNNNNNNNGC	3 cut(s)	226, 386, 1157
BstSFI	CTRYAG	1 cut(s)	387
BstSLI	GKGCMC	2 cut(s)	331, 508
BstV1I	GCAGC	2 cut(s)	229, 373
BstV2I	GAAGAC	1 cut(s)	852
BstX2I	RGATCY	4 cut(s)	391, 777, 1006, 1258
BstYI	RGATCY	4 cut(s)	391, 777, 1006, 1258
Bsu15I	ATCGAT	1 cut(s)	237
Bsu36I	CCTNAGG	2 cut(s)	576, 770
BsuTUI	ATCGAT	1 cut(s)	237
BtgI	CCRYGG	2 cut(s)	210, 1299
BtrI	CACGTC	1 cut(s)	332
BtsCI	GGATG	1 cut(s)	952
BtsI	GCAGTG	1 cut(s)	761
BtsIMutI	CAGTG	3 cut(s)	102, 761, 1151
Cac8I	GCNNGC	2 cut(s)	222, 827
CciI	TCATGA	1 cut(s)	805
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	766
ClaI	ATCGAT	1 cut(s)	237
CseI	GACGC	2 cut(s)	289, 554
Csp6I	GTAC	4 cut(s)	87, 667, 688, 1054
CviAII	CATG	6 cut(s)	211, 592, 806, 970, 1105, 1300
CviQI	GTAC	4 cut(s)	87, 667, 688, 1054
DpnI	GATC	9 cut(s)	36, 240, 393, 486, 527, 779, 1008, 1199, 1260
DpnII	GATC	9 cut(s)	34, 238, 391, 484, 525, 777, 1006, 1197, 1258
Eam1104I	CTCTTC	2 cut(s)	45, 594
EarI	CTCTTC	2 cut(s)	45, 594
EciI	GGCGGA	1 cut(s)	1130
Eco130I	CCWWGG	2 cut(s)	210, 1299
Eco32I	GATATC	1 cut(s)	727
Eco47I	GGWCC	1 cut(s)	766
Eco57I	CTGAAG	3 cut(s)	98, 402, 717
Eco81I	CCTNAGG	2 cut(s)	576, 770
EcoNI	CCTNNNNNAGG	1 cut(s)	579
EcoRV	GATATC	1 cut(s)	727
EcoT14I	CCWWGG	2 cut(s)	210, 1299
ErhI	CCWWGG	2 cut(s)	210, 1299
Esp3I	CGTCTC	1 cut(s)	338
FaeI	CATG	6 cut(s)	214, 595, 809, 973, 1108, 1303
FatI	CATG	6 cut(s)	210, 591, 805, 969, 1104, 1299
FauI	CCCGC	1 cut(s)	5
Fnu4HI	GCNGC	4 cut(s)	99, 218, 387, 1314
FokI	GGATG	1 cut(s)	959
Fsp4HI	GCNGC	4 cut(s)	99, 218, 387, 1314
FspBI	CTAG	3 cut(s)	519, 534, 1256
GluI	GCNGC	4 cut(s)	99, 218, 387, 1314
HapII	CCGG	3 cut(s)	84, 749, 764
HgaI	GACGC	2 cut(s)	289, 554
Hin1II	CATG	6 cut(s)	214, 595, 809, 973, 1108, 1303
HindIII	AAGCTT	3 cut(s)	17, 823, 1250
HinfI	GANTC	7 cut(s)	66, 109, 160, 661, 760, 1020, 1219
HpaII	CCGG	3 cut(s)	84, 749, 764
HphI	GGTGA	4 cut(s)	328, 596, 1001, 1013
Hpy166II	GTNNAC	2 cut(s)	506, 1306
Hpy188I	TCNGA	9 cut(s)	45, 150, 243, 264, 375, 862, 1011, 1132, 1322
Hpy8I	GTNNAC	2 cut(s)	506, 1306
HpyAV	CCTTC	2 cut(s)	575, 741
HpyCH4IV	ACGT	3 cut(s)	78, 181, 331
HpyF10VI	GCNNNNNNNGC	3 cut(s)	226, 386, 1157
HpySE526I	ACGT	3 cut(s)	78, 181, 331
Hsp92II	CATG	6 cut(s)	214, 595, 809, 973, 1108, 1303
Kpn2I	TCCGGA	1 cut(s)	748
Kzo9I	GATC	9 cut(s)	34, 238, 391, 484, 525, 777, 1006, 1197, 1258
LmnI	GCTCC	3 cut(s)	610, 631, 751
Lsp1109I	GCAGC	2 cut(s)	229, 373
LweI	GCATC	3 cut(s)	118, 870, 1132
MaeI	CTAG	3 cut(s)	519, 534, 1256
MaeII	ACGT	3 cut(s)	78, 181, 331
MaeIII	GTNAC	2 cut(s)	898, 989
MalI	GATC	9 cut(s)	36, 240, 393, 486, 527, 779, 1008, 1199, 1260
MbiI	CCGCTC	1 cut(s)	1316
MboI	GATC	9 cut(s)	34, 238, 391, 484, 525, 777, 1006, 1197, 1258
MboII	GAAGA	9 cut(s)	62, 104, 374, 535, 580, 611, 787, 857, 1016
MflI	RGATCY	4 cut(s)	391, 777, 1006, 1258
MhlI	GDGCHC	2 cut(s)	331, 508
MluCI	AATT	6 cut(s)	447, 642, 853, 1182, 1240, 1284
MlyI	GAGTC	1 cut(s)	60
MroI	TCCGGA	1 cut(s)	748
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	3 cut(s)	357, 636, 1073
MslI	CAYNNNNRTG	2 cut(s)	681, 928
MspA1I	CMGCKG	1 cut(s)	12
MspCI	CTTAAG	1 cut(s)	635
MspI	CCGG	3 cut(s)	84, 749, 764
MwoI	GCNNNNNNNGC	3 cut(s)	226, 386, 1157
NcoI	CCATGG	2 cut(s)	210, 1299
NdeII	GATC	9 cut(s)	34, 238, 391, 484, 525, 777, 1006, 1197, 1258
NlaIII	CATG	6 cut(s)	214, 595, 809, 973, 1108, 1303
NlaIV	GGNNCC	2 cut(s)	606, 801
NmeAIII	GCCGAG	1 cut(s)	1111
NmuCI	GTSAC	2 cut(s)	898, 989
PagI	TCATGA	1 cut(s)	805
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	6 cut(s)	109, 160, 661, 760, 1020, 1219
PkrI	GCNGC	4 cut(s)	100, 219, 388, 1315
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
PspN4I	GGNNCC	2 cut(s)	606, 801
PspPI	GGNCC	1 cut(s)	766
PstI	CTGCAG	1 cut(s)	391
PsuI	RGATCY	4 cut(s)	391, 777, 1006, 1258
RsaI	GTAC	4 cut(s)	88, 668, 689, 1055
RsaNI	GTAC	4 cut(s)	87, 667, 688, 1054
RseI	CAYNNNNRTG	2 cut(s)	681, 928
SaqAI	TTAA	3 cut(s)	357, 636, 1073
SatI	GCNGC	4 cut(s)	99, 218, 387, 1314
Sau3AI	GATC	9 cut(s)	34, 238, 391, 484, 525, 777, 1006, 1197, 1258
Sau96I	GGNCC	1 cut(s)	766
ScaI	AGTACT	1 cut(s)	1055
SchI	GAGTC	1 cut(s)	60
SduI	GDGCHC	2 cut(s)	331, 508
SfaNI	GCATC	3 cut(s)	118, 870, 1132
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	1 cut(s)	766
SmiMI	CAYNNNNRTG	2 cut(s)	681, 928
SmlI	CTYRAG	2 cut(s)	20, 635
SmoI	CTYRAG	2 cut(s)	20, 635
Sse9I	AATT	6 cut(s)	447, 642, 853, 1182, 1240, 1284
SsiI	CCGC	4 cut(s)	12, 99, 1115, 1314
SspMI	CTAG	3 cut(s)	519, 534, 1256
StyI	CCWWGG	2 cut(s)	210, 1299
TaiI	ACGT	3 cut(s)	81, 184, 334
TaqI	TCGA	5 cut(s)	126, 237, 321, 954, 1026
TasI	AATT	6 cut(s)	447, 642, 853, 1182, 1240, 1284
TatI	WGTACW	2 cut(s)	687, 1053
TauI	GCSGC	2 cut(s)	101, 1316
TfiI	GAWTC	6 cut(s)	109, 160, 661, 760, 1020, 1219
Tru1I	TTAA	3 cut(s)	357, 636, 1073
Tru9I	TTAA	3 cut(s)	357, 636, 1073
TscAI	CASTG	3 cut(s)	109, 761, 1158
TseFI	GTSAC	2 cut(s)	898, 989
TseI	GCWGC	2 cut(s)	217, 386
Tsp45I	GTSAC	2 cut(s)	898, 989
TspDTI	ATGAA	1 cut(s)	63
TspRI	CASTG	3 cut(s)	109, 761, 1158
Vha464I	CTTAAG	1 cut(s)	635
VneI	GTGCAC	1 cut(s)	504
VpaK11BI	GGWCC	1 cut(s)	766
XagI	CCTNNNNNAGG	1 cut(s)	579
XapI	RAATTY	4 cut(s)	642, 853, 1240, 1284
XbaI	TCTAGA	1 cut(s)	1255
XmnI	GAANNNNTTC	1 cut(s)	468
XspI	CTAG	3 cut(s)	519, 534, 1256
ZrmI	AGTACT	1 cut(s)	1055

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.