26S proteasome non-ATPase regulatory subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G09900 AT5G09900 AT5G64760 AT5G64760 AT5G64760 |
| fragaria_vesca | FvH4_1g23340 FvH4_1g23340 FvH4_1g23340 FvH4_1g23340 FvH4_1g23340 FvH4_5g27840 |
| malus_domestica | MD02G1223100.v1.1 MD07G1091700.v1.1 |
| prunus_persica | Prupe.2G117100_v2.0.a1 Prupe.2G119800_v2.0.a1 |
| pyrus_communis | pycom07g07500 |
| rosa_chinensis | RchiOBHm_Chr2g0118191 RchiOBHm_Chr7g0219741 |
| rosa_laevigata | RLG00000002273 RLG00000018402 |
| rosa_multiflora | Rmu_sc0001925.1_g000001 Rmu_sc0005014.1_g000001 Rmu_sc0007335.1_g000004 |
| rosa_roxburghii | Rroxscaffold_2G00125830 Rroxscaffold_3G00239890 |
| rosa_rugosa | Rorug02G0217200 Rorug07G0187400.1 Rorug07G0187500 |
| rosa_samantha | Rh2AG273400 Rh2BG285600 Rh2DG281400 Rh2DG299400 Rh7AG331200 Rh7BG321000 Rh7CG348600 Rh7DG326700 |
| rosa_wichuraiana | Rw2G021620 Rw2G021640 Rw2G021760 Rw7G027880 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 134 |
| Acc36I | ACCTGC | 1 cut(s) | 134 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 175, 909 |
| AciI | CCGC | 2 cut(s) | 95, 422 |
| AclI | AACGTT | 1 cut(s) | 1197 |
| AclWI | GGATC | 4 cut(s) | 700, 719, 732, 782 |
| AcoI | YGGCCR | 1 cut(s) | 1137 |
| AcsI | RAATTY | 1 cut(s) | 850 |
| AcuI | CTGAAG | 2 cut(s) | 414, 1002 |
| AfaI | GTAC | 3 cut(s) | 630, 767, 785 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 175, 909 |
| AjnI | CCWGG | 2 cut(s) | 819, 1086 |
| Alw21I | GWGCWC | 2 cut(s) | 343, 520 |
| Alw26I | GTCTC | 1 cut(s) | 1051 |
| AlwI | GGATC | 4 cut(s) | 700, 719, 732, 782 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 175 |
| Ama87I | CYCGRG | 1 cut(s) | 1039 |
| AoxI | GGCC | 3 cut(s) | 210, 1137, 1151 |
| ApeKI | GCWGC | 5 cut(s) | 398, 977, 1069, 1231, 1254 |
| ApoI | RAATTY | 1 cut(s) | 850 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 480, 917 |
| AspLEI | GCGC | 1 cut(s) | 1132 |
| AspS9I | GGNCC | 2 cut(s) | 226, 900 |
| AsuHPI | GGTGA | 4 cut(s) | 98, 608, 771, 980 |
| AvaI | CYCGRG | 1 cut(s) | 1039 |
| AvaII | GGWCC | 2 cut(s) | 226, 900 |
| BalI | TGGCCA | 1 cut(s) | 1139 |
| BamHI | GGATCC | 1 cut(s) | 724 |
| BbsI | GAAGAC | 2 cut(s) | 161, 501 |
| Bbv12I | GWGCWC | 2 cut(s) | 343, 520 |
| BbvI | GCAGC | 5 cut(s) | 385, 989, 1056, 1218, 1241 |
| BccI | CCATC | 1 cut(s) | 640 |
| BceAI | ACGGC | 3 cut(s) | 177, 197, 666 |
| BciT130I | CCWGG | 2 cut(s) | 821, 1088 |
| BciVI | GTATCC | 2 cut(s) | 732, 1094 |
| BclI | TGATCA | 1 cut(s) | 250 |
| BcoDI | GTCTC | 1 cut(s) | 1051 |
| BfaI | CTAG | 1 cut(s) | 1019 |
| BfoI | RGCGCY | 1 cut(s) | 1133 |
| BfuAI | ACCTGC | 1 cut(s) | 134 |
| BfuI | GTATCC | 2 cut(s) | 732, 1094 |
| BglII | AGATCT | 1 cut(s) | 985 |
| BisI | GCNGC | 5 cut(s) | 399, 978, 1070, 1232, 1255 |
| BlsI | GCNGC | 5 cut(s) | 400, 979, 1071, 1233, 1256 |
| Bme1390I | CCNGG | 2 cut(s) | 821, 1088 |
| Bme18I | GGWCC | 2 cut(s) | 226, 900 |
| BmeT110I | CYCGRG | 1 cut(s) | 1039 |
| BmgT120I | GGNCC | 2 cut(s) | 226, 900 |
| BmiI | GGNNCC | 2 cut(s) | 100, 726 |
| BmrFI | CCNGG | 2 cut(s) | 821, 1088 |
| BmsI | GCATC | 3 cut(s) | 25, 399, 1111 |
| BpiI | GAAGAC | 2 cut(s) | 161, 501 |
| BpmI | CTGGAG | 1 cut(s) | 842 |
| BpuEI | CTTGAG | 4 cut(s) | 146, 188, 572, 692 |
| BsaBI | GATNNNNATC | 1 cut(s) | 831 |
| BsaJI | CCNNGG | 5 cut(s) | 193, 545, 819, 882, 1125 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 175, 909 |
| Bse3DI | GCAATG | 1 cut(s) | 243 |
| Bse8I | GATNNNNATC | 1 cut(s) | 831 |
| BseBI | CCWGG | 2 cut(s) | 821, 1088 |
| BseDI | CCNNGG | 5 cut(s) | 193, 545, 819, 882, 1125 |
| BseGI | GGATG | 1 cut(s) | 931 |
| BseJI | GATNNNNATC | 1 cut(s) | 831 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 175, 909 |
| BseMI | GCAATG | 1 cut(s) | 243 |
| BseMII | CTCAG | 3 cut(s) | 444, 746, 1086 |
| BseXI | GCAGC | 5 cut(s) | 385, 989, 1056, 1218, 1241 |
| BseYI | CCCAGC | 1 cut(s) | 311 |
| BshFI | GGCC | 3 cut(s) | 212, 1139, 1153 |
| BsiHKAI | GWGCWC | 2 cut(s) | 343, 520 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1039 |
| BsiWI | CGTACG | 1 cut(s) | 783 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 175, 909 |
| BsmAI | GTCTC | 1 cut(s) | 1051 |
| BsmI | GAATGC | 1 cut(s) | 464 |
| BsnI | GGCC | 3 cut(s) | 212, 1139, 1153 |
| BsoBI | CYCGRG | 1 cut(s) | 1039 |
| Bsp1286I | GDGCHC | 2 cut(s) | 343, 520 |
| Bsp143I | GATC | 8 cut(s) | 250, 262, 366, 705, 724, 787, 985, 1237 |
| Bsp19I | CCATGG | 1 cut(s) | 882 |
| BspACI | CCGC | 2 cut(s) | 95, 422 |
| BspANI | GGCC | 3 cut(s) | 212, 1139, 1153 |
| BspCNI | CTCAG | 3 cut(s) | 445, 745, 1087 |
| BspHI | TCATGA | 1 cut(s) | 13 |
| BspLI | GGNNCC | 2 cut(s) | 100, 726 |
| BspMI | ACCTGC | 1 cut(s) | 134 |
| BspPI | GGATC | 4 cut(s) | 700, 719, 732, 782 |
| BspQI | GCTCTTC | 2 cut(s) | 369, 1244 |
| BsrDI | GCAATG | 1 cut(s) | 243 |
| BssECI | CCNNGG | 5 cut(s) | 193, 545, 819, 882, 1125 |
| BssMI | GATC | 8 cut(s) | 250, 262, 366, 705, 724, 787, 985, 1237 |
| BssT1I | CCWWGG | 3 cut(s) | 545, 882, 1125 |
| Bst2UI | CCWGG | 2 cut(s) | 821, 1088 |
| Bst4CI | ACNGT | 4 cut(s) | 345, 500, 528, 783 |
| Bst6I | CTCTTC | 3 cut(s) | 369, 1049, 1244 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 238 |
| BstC8I | GCNNGC | 2 cut(s) | 210, 234 |
| BstDEI | CTNAG | 5 cut(s) | 31, 453, 732, 1079, 1095 |
| BstDSI | CCRYGG | 2 cut(s) | 193, 882 |
| BstEII | GGTNACC | 1 cut(s) | 877 |
| BstF5I | GGATG | 1 cut(s) | 931 |
| BstH2I | RGCGCY | 1 cut(s) | 1133 |
| BstHHI | GCGC | 1 cut(s) | 1132 |
| BstKTI | GATC | 8 cut(s) | 253, 265, 369, 708, 727, 790, 988, 1240 |
| BstMAI | GTCTC | 1 cut(s) | 1051 |
| BstMBI | GATC | 8 cut(s) | 250, 262, 366, 705, 724, 787, 985, 1237 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 218, 238, 398, 1136 |
| BstNI | CCWGG | 2 cut(s) | 821, 1088 |
| BstNSI | RCATGY | 1 cut(s) | 952 |
| BstPI | GGTNACC | 1 cut(s) | 877 |
| BstSCI | CCNGG | 2 cut(s) | 819, 1086 |
| BstV1I | GCAGC | 5 cut(s) | 385, 989, 1056, 1218, 1241 |
| BstV2I | GAAGAC | 2 cut(s) | 161, 501 |
| BstX2I | RGATCY | 3 cut(s) | 705, 724, 985 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 735, 1132 |
| BstYI | RGATCY | 3 cut(s) | 705, 724, 985 |
| BsuI | GTATCC | 2 cut(s) | 732, 1094 |
| BsuRI | GGCC | 3 cut(s) | 212, 1139, 1153 |
| BtgI | CCRYGG | 2 cut(s) | 193, 882 |
| BtgZI | GCGATG | 1 cut(s) | 618 |
| BtsCI | GGATG | 1 cut(s) | 931 |
| BtsIMutI | CAGTG | 2 cut(s) | 114, 740 |
| BveI | ACCTGC | 1 cut(s) | 134 |
| Cac8I | GCNNGC | 2 cut(s) | 210, 234 |
| CaiI | CAGNNNCTG | 1 cut(s) | 175 |
| CciI | TCATGA | 1 cut(s) | 13 |
| CfoI | GCGC | 1 cut(s) | 1132 |
| Cfr13I | GGNCC | 2 cut(s) | 226, 900 |
| Csp6I | GTAC | 3 cut(s) | 629, 766, 784 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 175, 210 |
| CviAII | CATG | 3 cut(s) | 14, 883, 949 |
| CviQI | GTAC | 3 cut(s) | 629, 766, 784 |
| DdeI | CTNAG | 5 cut(s) | 31, 453, 732, 1079, 1095 |
| DpnI | GATC | 8 cut(s) | 252, 264, 368, 707, 726, 789, 987, 1239 |
| DpnII | GATC | 8 cut(s) | 250, 262, 366, 705, 724, 787, 985, 1237 |
| DraI | TTTAAA | 1 cut(s) | 139 |
| EaeI | YGGCCR | 1 cut(s) | 1137 |
| Eam1104I | CTCTTC | 3 cut(s) | 369, 1049, 1244 |
| EarI | CTCTTC | 3 cut(s) | 369, 1049, 1244 |
| Eco130I | CCWWGG | 3 cut(s) | 545, 882, 1125 |
| Eco47I | GGWCC | 2 cut(s) | 226, 900 |
| Eco57I | CTGAAG | 2 cut(s) | 414, 1002 |
| Eco88I | CYCGRG | 1 cut(s) | 1039 |
| Eco91I | GGTNACC | 1 cut(s) | 877 |
| EcoO65I | GGTNACC | 1 cut(s) | 877 |
| EcoRII | CCWGG | 2 cut(s) | 819, 1086 |
| EcoT14I | CCWWGG | 3 cut(s) | 545, 882, 1125 |
| ErhI | CCWWGG | 3 cut(s) | 545, 882, 1125 |
| FaeI | CATG | 3 cut(s) | 17, 886, 952 |
| FatI | CATG | 3 cut(s) | 13, 882, 948 |
| FauI | CCCGC | 1 cut(s) | 88 |
| FbaI | TGATCA | 1 cut(s) | 250 |
| Fnu4HI | GCNGC | 5 cut(s) | 399, 978, 1070, 1232, 1255 |
| FokI | GGATG | 1 cut(s) | 938 |
| Fsp4HI | GCNGC | 5 cut(s) | 399, 978, 1070, 1232, 1255 |
| FspBI | CTAG | 1 cut(s) | 1019 |
| GlaI | GCGC | 1 cut(s) | 1131 |
| GluI | GCNGC | 5 cut(s) | 399, 978, 1070, 1232, 1255 |
| GsaI | CCCAGC | 1 cut(s) | 315 |
| GsuI | CTGGAG | 1 cut(s) | 842 |
| HaeII | RGCGCY | 1 cut(s) | 1133 |
| HaeIII | GGCC | 3 cut(s) | 212, 1139, 1153 |
| HhaI | GCGC | 1 cut(s) | 1132 |
| Hin1II | CATG | 3 cut(s) | 17, 886, 952 |
| Hin6I | GCGC | 1 cut(s) | 1130 |
| HinP1I | GCGC | 1 cut(s) | 1130 |
| HinfI | GANTC | 3 cut(s) | 172, 832, 844 |
| HphI | GGTGA | 4 cut(s) | 98, 608, 771, 980 |
| Hpy166II | GTNNAC | 1 cut(s) | 1285 |
| Hpy188I | TCNGA | 5 cut(s) | 255, 841, 1111, 1175, 1299 |
| Hpy188III | TCNNGA | 6 cut(s) | 14, 125, 266, 473, 503, 910 |
| Hpy8I | GTNNAC | 1 cut(s) | 1285 |
| HpyAV | CCTTC | 6 cut(s) | 11, 100, 587, 720, 815, 1294 |
| HpyCH4III | ACNGT | 4 cut(s) | 345, 500, 528, 783 |
| HpyCH4IV | ACGT | 1 cut(s) | 1197 |
| HpyCH4V | TGCA | 7 cut(s) | 221, 241, 362, 412, 464, 796, 1064 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 218, 238, 398, 1136 |
| HpyF3I | CTNAG | 5 cut(s) | 31, 453, 732, 1079, 1095 |
| HpySE526I | ACGT | 1 cut(s) | 1197 |
| Hsp92II | CATG | 3 cut(s) | 17, 886, 952 |
| HspAI | GCGC | 1 cut(s) | 1130 |
| Ksp22I | TGATCA | 1 cut(s) | 250 |
| Kzo9I | GATC | 8 cut(s) | 250, 262, 366, 705, 724, 787, 985, 1237 |
| LguI | GCTCTTC | 2 cut(s) | 369, 1244 |
| LmnI | GCTCC | 1 cut(s) | 622 |
| Lsp1109I | GCAGC | 5 cut(s) | 385, 989, 1056, 1218, 1241 |
| LweI | GCATC | 3 cut(s) | 25, 399, 1111 |
| MaeI | CTAG | 1 cut(s) | 1019 |
| MaeII | ACGT | 1 cut(s) | 1197 |
| MaeIII | GTNAC | 9 cut(s) | 26, 112, 214, 777, 858, 877, 968, 1045, 1190 |
| MalI | GATC | 8 cut(s) | 252, 264, 368, 707, 726, 789, 987, 1239 |
| MboI | GATC | 8 cut(s) | 250, 262, 366, 705, 724, 787, 985, 1237 |
| MflI | RGATCY | 3 cut(s) | 705, 724, 985 |
| MhlI | GDGCHC | 2 cut(s) | 343, 520 |
| MlsI | TGGCCA | 1 cut(s) | 1139 |
| MluCI | AATT | 7 cut(s) | 50, 330, 811, 850, 1002, 1164, 1204 |
| MluNI | TGGCCA | 1 cut(s) | 1139 |
| Mox20I | TGGCCA | 1 cut(s) | 1139 |
| MroXI | GAANNNNTTC | 2 cut(s) | 480, 917 |
| MscI | TGGCCA | 1 cut(s) | 1139 |
| MseI | TTAA | 6 cut(s) | 138, 288, 347, 717, 810, 1203 |
| MslI | CAYNNNNRTG | 1 cut(s) | 660 |
| Msp20I | TGGCCA | 1 cut(s) | 1139 |
| MspA1I | CMGCKG | 1 cut(s) | 980 |
| MspR9I | CCNGG | 2 cut(s) | 821, 1088 |
| Mva1269I | GAATGC | 1 cut(s) | 464 |
| MvaI | CCWGG | 2 cut(s) | 821, 1088 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 218, 238, 398, 1136 |
| NcoI | CCATGG | 1 cut(s) | 882 |
| NdeII | GATC | 8 cut(s) | 250, 262, 366, 705, 724, 787, 985, 1237 |
| NlaIII | CATG | 3 cut(s) | 17, 886, 952 |
| NlaIV | GGNNCC | 2 cut(s) | 100, 726 |
| NmuCI | GTSAC | 4 cut(s) | 26, 112, 777, 968 |
| NspI | RCATGY | 1 cut(s) | 952 |
| PaeR7I | CTCGAG | 1 cut(s) | 1039 |
| PagI | TCATGA | 1 cut(s) | 13 |
| PaqCI | CACCTGC | 1 cut(s) | 134 |
| PciSI | GCTCTTC | 2 cut(s) | 369, 1244 |
| PctI | GAATGC | 1 cut(s) | 464 |
| PdmI | GAANNNNTTC | 2 cut(s) | 480, 917 |
| PfeI | GAWTC | 3 cut(s) | 172, 832, 844 |
| Pfl23II | CGTACG | 1 cut(s) | 783 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 175, 909 |
| PfoI | TCCNGGA | 1 cut(s) | 1086 |
| PkrI | GCNGC | 5 cut(s) | 400, 979, 1071, 1233, 1256 |
| Psp1406I | AACGTT | 1 cut(s) | 1197 |
| Psp6I | CCWGG | 2 cut(s) | 819, 1086 |
| PspEI | GGTNACC | 1 cut(s) | 877 |
| PspFI | CCCAGC | 1 cut(s) | 311 |
| PspGI | CCWGG | 2 cut(s) | 819, 1086 |
| PspLI | CGTACG | 1 cut(s) | 783 |
| PspN4I | GGNNCC | 2 cut(s) | 100, 726 |
| PspPI | GGNCC | 2 cut(s) | 226, 900 |
| PspXI | VCTCGAGB | 1 cut(s) | 1039 |
| PstNI | CAGNNNCTG | 1 cut(s) | 175 |
| PsuI | RGATCY | 3 cut(s) | 705, 724, 985 |
| PvuII | CAGCTG | 1 cut(s) | 980 |
| RsaI | GTAC | 3 cut(s) | 630, 767, 785 |
| RsaNI | GTAC | 3 cut(s) | 629, 766, 784 |
| RseI | CAYNNNNRTG | 1 cut(s) | 660 |
| SapI | GCTCTTC | 2 cut(s) | 369, 1244 |
| SaqAI | TTAA | 6 cut(s) | 138, 288, 347, 717, 810, 1203 |
| SatI | GCNGC | 5 cut(s) | 399, 978, 1070, 1232, 1255 |
| Sau3AI | GATC | 8 cut(s) | 250, 262, 366, 705, 724, 787, 985, 1237 |
| Sau96I | GGNCC | 2 cut(s) | 226, 900 |
| ScrFI | CCNGG | 2 cut(s) | 821, 1088 |
| SduI | GDGCHC | 2 cut(s) | 343, 520 |
| SfaNI | GCATC | 3 cut(s) | 25, 399, 1111 |
| Sfr274I | CTCGAG | 1 cut(s) | 1039 |
| SinI | GGWCC | 2 cut(s) | 226, 900 |
| SlaI | CTCGAG | 1 cut(s) | 1039 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 660 |
| SmlI | CTYRAG | 5 cut(s) | 125, 203, 587, 671, 1039 |
| SmoI | CTYRAG | 5 cut(s) | 125, 203, 587, 671, 1039 |
| Sse9I | AATT | 7 cut(s) | 50, 330, 811, 850, 1002, 1164, 1204 |
| SsiI | CCGC | 2 cut(s) | 95, 422 |
| SspI | AATATT | 1 cut(s) | 1015 |
| SspMI | CTAG | 1 cut(s) | 1019 |
| StyD4I | CCNGG | 2 cut(s) | 819, 1086 |
| StyI | CCWWGG | 3 cut(s) | 545, 882, 1125 |
| TaaI | ACNGT | 4 cut(s) | 345, 500, 528, 783 |
| TaiI | ACGT | 1 cut(s) | 1200 |
| TaqI | TCGA | 2 cut(s) | 530, 1040 |
| TasI | AATT | 7 cut(s) | 50, 330, 811, 850, 1002, 1164, 1204 |
| TfiI | GAWTC | 3 cut(s) | 172, 832, 844 |
| Tru1I | TTAA | 6 cut(s) | 138, 288, 347, 717, 810, 1203 |
| Tru9I | TTAA | 6 cut(s) | 138, 288, 347, 717, 810, 1203 |
| TscAI | CASTG | 2 cut(s) | 121, 740 |
| TseFI | GTSAC | 4 cut(s) | 26, 112, 777, 968 |
| TseI | GCWGC | 5 cut(s) | 398, 977, 1069, 1231, 1254 |
| Tsp45I | GTSAC | 4 cut(s) | 26, 112, 777, 968 |
| TspDTI | ATGAA | 2 cut(s) | 30, 457 |
| TspRI | CASTG | 2 cut(s) | 121, 740 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 175, 909 |
| VpaK11BI | GGWCC | 2 cut(s) | 226, 900 |
| XapI | RAATTY | 1 cut(s) | 850 |
| XceI | RCATGY | 1 cut(s) | 952 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1132 |
| XhoI | CTCGAG | 1 cut(s) | 1039 |
| XmnI | GAANNNNTTC | 2 cut(s) | 480, 917 |
| XspI | CTAG | 1 cut(s) | 1019 |