Rw2G021620

26S proteasome non-ATPase regulatory subunit

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
30033702 .. 30041489
7788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G021620.1

Sequence Viewer

Length: 1308 bp
ATGGCAAAATATCATGAAGGAGGAAGTGACTTAGATGCCCAAATAGAGAAATTGCTGAATGTGGAGAAACAAATGAGGCTCTCTGGTGATGTGGCGGGAACCAAGAAGGCTGTCACTGACATTCTTGAGCTTTGCTTTAAAGCAGGTGCTTGGAAGACCCTCAATGACCAGATTCTGGTCTTGTCCAAACGCCGTGGTCAGCTCAAGCAGGCCGTAACTGCATTGGTCCAGCAAGCAATGCAATATATTGATCAGACACCTGATCTTGAAACTCGTATAGAGCTGATTAAAACACTAAATAATGTTTCTGCTGGGAAGATATATGTTGAAATTGAGAGAGCACGGTTAATCAAAAGACTTGCAAAGATCAAGGAAGAGCAAGGGCTTATTGCTGAAGCTGCTGATTTGATGCAAGAAACTGCGGTGGAAACATTTGGTGCTATGGCAAAAACTGAGAAGATTGCATTCATTCTTGAACAAGTTCGTTTGTGTGAAGACCGTCAGGATTATGTTCGTGCTCAAATACTGTCGAGGAAGATTAGTCCAAGGGTGTTTGATGTTGATACTTCAAAAGAAAAGAAAAAACTCAAGGAAGGTGATAATGTTGTTGAAGAAGCTCCTGCTGATGTACCATCGCTCTTGGAGTATTATTCTCATAACAATGATTACCTTGAGATTTGCCGTTGCTATAAGGCGATATACGAGATCCCTTCTGTTAAAGAGGATCCAGCTCAGTGGATACCGATATTGAGGAAAATCTGTTGGTACTTGGTTCTGTCACCGTACGATCCAATGCAGTCAAGCCTTCTTAATTCCACCCTGGAGGATAAGAATCTTTCAGAGATTCCAAATTTTAGGTTACTTTTGAAACAAGTGGTAACCATGGAGGTCATACAATGGACCACACTCTGGAATAAGTTCAAGGATGAGTTTGAGAATGAGAAGAACATGCTTGGAGGTTCTTTGGGTGACAAAGCAGCTGAAGATCTAAAGCAGAGGATAATTGAACATAATATTCTAGTTGTTTCAAAGTATTACTCGAGGGTTACTTTGAAGAGACTTGCAGAGCTGCTCTGTCTAAGTATCCAGGAAGCTGAGAAGCATCTTTCAGAAATGGTTGTGTCCAAGGCGCTGGTGGCCAAGATTGACAGGCCAATAGGCATAATTTGTTTCCGAACTGCGAAAGATAGTAACAACGTTCTTAATTCGTGGGCTACAAACTTGGAGAAGCTGCTTGATCTTGTTGAGAAGAGCTGCCACCAAATACACAAAGAAACAATGGTTCACAAGACAGCTCTGAAGGTGTGA

Protein Analysis

435

Amino Acids

49.72

Weight (kDa)

7.05

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSMD12-CSN4_N PF22241 15 - 242 7.9e-70 PSMD12/CSN4, N-terminal
PCI PF01399 326 - 392 4.1e-17 PCI domain
RPN5_C PF18098 398 - 430 7.3e-11 26S proteasome regulatory subunit RPN5 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 134
Acc36I ACCTGC 1 cut(s) 134
AccB7I CCANNNNNTGG 2 cut(s) 175, 909
AciI CCGC 2 cut(s) 95, 422
AclI AACGTT 1 cut(s) 1197
AclWI GGATC 4 cut(s) 700, 719, 732, 782
AcoI YGGCCR 1 cut(s) 1137
AcsI RAATTY 1 cut(s) 850
AcuI CTGAAG 2 cut(s) 414, 1002
AfaI GTAC 3 cut(s) 630, 767, 785
AfiI CCNNNNNNNGG 2 cut(s) 175, 909
AjnI CCWGG 2 cut(s) 819, 1086
Alw21I GWGCWC 2 cut(s) 343, 520
Alw26I GTCTC 1 cut(s) 1051
AlwI GGATC 4 cut(s) 700, 719, 732, 782
AlwNI CAGNNNCTG 1 cut(s) 175
Ama87I CYCGRG 1 cut(s) 1039
AoxI GGCC 3 cut(s) 210, 1137, 1151
ApeKI GCWGC 5 cut(s) 398, 977, 1069, 1231, 1254
ApoI RAATTY 1 cut(s) 850
Asp700I GAANNNNTTC 2 cut(s) 480, 917
AspLEI GCGC 1 cut(s) 1132
AspS9I GGNCC 2 cut(s) 226, 900
AsuHPI GGTGA 4 cut(s) 98, 608, 771, 980
AvaI CYCGRG 1 cut(s) 1039
AvaII GGWCC 2 cut(s) 226, 900
BalI TGGCCA 1 cut(s) 1139
BamHI GGATCC 1 cut(s) 724
BbsI GAAGAC 2 cut(s) 161, 501
Bbv12I GWGCWC 2 cut(s) 343, 520
BbvI GCAGC 5 cut(s) 385, 989, 1056, 1218, 1241
BccI CCATC 1 cut(s) 640
BceAI ACGGC 3 cut(s) 177, 197, 666
BciT130I CCWGG 2 cut(s) 821, 1088
BciVI GTATCC 2 cut(s) 732, 1094
BclI TGATCA 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 1051
BfaI CTAG 1 cut(s) 1019
BfoI RGCGCY 1 cut(s) 1133
BfuAI ACCTGC 1 cut(s) 134
BfuI GTATCC 2 cut(s) 732, 1094
BglII AGATCT 1 cut(s) 985
BisI GCNGC 5 cut(s) 399, 978, 1070, 1232, 1255
BlsI GCNGC 5 cut(s) 400, 979, 1071, 1233, 1256
Bme1390I CCNGG 2 cut(s) 821, 1088
Bme18I GGWCC 2 cut(s) 226, 900
BmeT110I CYCGRG 1 cut(s) 1039
BmgT120I GGNCC 2 cut(s) 226, 900
BmiI GGNNCC 2 cut(s) 100, 726
BmrFI CCNGG 2 cut(s) 821, 1088
BmsI GCATC 3 cut(s) 25, 399, 1111
BpiI GAAGAC 2 cut(s) 161, 501
BpmI CTGGAG 1 cut(s) 842
BpuEI CTTGAG 4 cut(s) 146, 188, 572, 692
BsaBI GATNNNNATC 1 cut(s) 831
BsaJI CCNNGG 5 cut(s) 193, 545, 819, 882, 1125
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 909
Bse3DI GCAATG 1 cut(s) 243
Bse8I GATNNNNATC 1 cut(s) 831
BseBI CCWGG 2 cut(s) 821, 1088
BseDI CCNNGG 5 cut(s) 193, 545, 819, 882, 1125
BseGI GGATG 1 cut(s) 931
BseJI GATNNNNATC 1 cut(s) 831
BseLI CCNNNNNNNGG 2 cut(s) 175, 909
BseMI GCAATG 1 cut(s) 243
BseMII CTCAG 3 cut(s) 444, 746, 1086
BseXI GCAGC 5 cut(s) 385, 989, 1056, 1218, 1241
BseYI CCCAGC 1 cut(s) 311
BshFI GGCC 3 cut(s) 212, 1139, 1153
BsiHKAI GWGCWC 2 cut(s) 343, 520
BsiHKCI CYCGRG 1 cut(s) 1039
BsiWI CGTACG 1 cut(s) 783
BslI CCNNNNNNNGG 2 cut(s) 175, 909
BsmAI GTCTC 1 cut(s) 1051
BsmI GAATGC 1 cut(s) 464
BsnI GGCC 3 cut(s) 212, 1139, 1153
BsoBI CYCGRG 1 cut(s) 1039
Bsp1286I GDGCHC 2 cut(s) 343, 520
Bsp143I GATC 8 cut(s) 250, 262, 366, 705, 724, 787, 985, 1237
Bsp19I CCATGG 1 cut(s) 882
BspACI CCGC 2 cut(s) 95, 422
BspANI GGCC 3 cut(s) 212, 1139, 1153
BspCNI CTCAG 3 cut(s) 445, 745, 1087
BspHI TCATGA 1 cut(s) 13
BspLI GGNNCC 2 cut(s) 100, 726
BspMI ACCTGC 1 cut(s) 134
BspPI GGATC 4 cut(s) 700, 719, 732, 782
BspQI GCTCTTC 2 cut(s) 369, 1244
BsrDI GCAATG 1 cut(s) 243
BssECI CCNNGG 5 cut(s) 193, 545, 819, 882, 1125
BssMI GATC 8 cut(s) 250, 262, 366, 705, 724, 787, 985, 1237
BssT1I CCWWGG 3 cut(s) 545, 882, 1125
Bst2UI CCWGG 2 cut(s) 821, 1088
Bst4CI ACNGT 4 cut(s) 345, 500, 528, 783
Bst6I CTCTTC 3 cut(s) 369, 1049, 1244
BstAPI GCANNNNNTGC 1 cut(s) 238
BstC8I GCNNGC 2 cut(s) 210, 234
BstDEI CTNAG 5 cut(s) 31, 453, 732, 1079, 1095
BstDSI CCRYGG 2 cut(s) 193, 882
BstEII GGTNACC 1 cut(s) 877
BstF5I GGATG 1 cut(s) 931
BstH2I RGCGCY 1 cut(s) 1133
BstHHI GCGC 1 cut(s) 1132
BstKTI GATC 8 cut(s) 253, 265, 369, 708, 727, 790, 988, 1240
BstMAI GTCTC 1 cut(s) 1051
BstMBI GATC 8 cut(s) 250, 262, 366, 705, 724, 787, 985, 1237
BstMWI GCNNNNNNNGC 4 cut(s) 218, 238, 398, 1136
BstNI CCWGG 2 cut(s) 821, 1088
BstNSI RCATGY 1 cut(s) 952
BstPI GGTNACC 1 cut(s) 877
BstSCI CCNGG 2 cut(s) 819, 1086
BstV1I GCAGC 5 cut(s) 385, 989, 1056, 1218, 1241
BstV2I GAAGAC 2 cut(s) 161, 501
BstX2I RGATCY 3 cut(s) 705, 724, 985
BstXI CCANNNNNNTGG 2 cut(s) 735, 1132
BstYI RGATCY 3 cut(s) 705, 724, 985
BsuI GTATCC 2 cut(s) 732, 1094
BsuRI GGCC 3 cut(s) 212, 1139, 1153
BtgI CCRYGG 2 cut(s) 193, 882
BtgZI GCGATG 1 cut(s) 618
BtsCI GGATG 1 cut(s) 931
BtsIMutI CAGTG 2 cut(s) 114, 740
BveI ACCTGC 1 cut(s) 134
Cac8I GCNNGC 2 cut(s) 210, 234
CaiI CAGNNNCTG 1 cut(s) 175
CciI TCATGA 1 cut(s) 13
CfoI GCGC 1 cut(s) 1132
Cfr13I GGNCC 2 cut(s) 226, 900
Csp6I GTAC 3 cut(s) 629, 766, 784
CspCI CAANNNNNGTGG 2 cut(s) 175, 210
CviAII CATG 3 cut(s) 14, 883, 949
CviQI GTAC 3 cut(s) 629, 766, 784
DdeI CTNAG 5 cut(s) 31, 453, 732, 1079, 1095
DpnI GATC 8 cut(s) 252, 264, 368, 707, 726, 789, 987, 1239
DpnII GATC 8 cut(s) 250, 262, 366, 705, 724, 787, 985, 1237
DraI TTTAAA 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 1137
Eam1104I CTCTTC 3 cut(s) 369, 1049, 1244
EarI CTCTTC 3 cut(s) 369, 1049, 1244
Eco130I CCWWGG 3 cut(s) 545, 882, 1125
Eco47I GGWCC 2 cut(s) 226, 900
Eco57I CTGAAG 2 cut(s) 414, 1002
Eco88I CYCGRG 1 cut(s) 1039
Eco91I GGTNACC 1 cut(s) 877
EcoO65I GGTNACC 1 cut(s) 877
EcoRII CCWGG 2 cut(s) 819, 1086
EcoT14I CCWWGG 3 cut(s) 545, 882, 1125
ErhI CCWWGG 3 cut(s) 545, 882, 1125
FaeI CATG 3 cut(s) 17, 886, 952
FatI CATG 3 cut(s) 13, 882, 948
FauI CCCGC 1 cut(s) 88
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 5 cut(s) 399, 978, 1070, 1232, 1255
FokI GGATG 1 cut(s) 938
Fsp4HI GCNGC 5 cut(s) 399, 978, 1070, 1232, 1255
FspBI CTAG 1 cut(s) 1019
GlaI GCGC 1 cut(s) 1131
GluI GCNGC 5 cut(s) 399, 978, 1070, 1232, 1255
GsaI CCCAGC 1 cut(s) 315
GsuI CTGGAG 1 cut(s) 842
HaeII RGCGCY 1 cut(s) 1133
HaeIII GGCC 3 cut(s) 212, 1139, 1153
HhaI GCGC 1 cut(s) 1132
Hin1II CATG 3 cut(s) 17, 886, 952
Hin6I GCGC 1 cut(s) 1130
HinP1I GCGC 1 cut(s) 1130
HinfI GANTC 3 cut(s) 172, 832, 844
HphI GGTGA 4 cut(s) 98, 608, 771, 980
Hpy166II GTNNAC 1 cut(s) 1285
Hpy188I TCNGA 5 cut(s) 255, 841, 1111, 1175, 1299
Hpy188III TCNNGA 6 cut(s) 14, 125, 266, 473, 503, 910
Hpy8I GTNNAC 1 cut(s) 1285
HpyAV CCTTC 6 cut(s) 11, 100, 587, 720, 815, 1294
HpyCH4III ACNGT 4 cut(s) 345, 500, 528, 783
HpyCH4IV ACGT 1 cut(s) 1197
HpyCH4V TGCA 7 cut(s) 221, 241, 362, 412, 464, 796, 1064
HpyF10VI GCNNNNNNNGC 4 cut(s) 218, 238, 398, 1136
HpyF3I CTNAG 5 cut(s) 31, 453, 732, 1079, 1095
HpySE526I ACGT 1 cut(s) 1197
Hsp92II CATG 3 cut(s) 17, 886, 952
HspAI GCGC 1 cut(s) 1130
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 8 cut(s) 250, 262, 366, 705, 724, 787, 985, 1237
LguI GCTCTTC 2 cut(s) 369, 1244
LmnI GCTCC 1 cut(s) 622
Lsp1109I GCAGC 5 cut(s) 385, 989, 1056, 1218, 1241
LweI GCATC 3 cut(s) 25, 399, 1111
MaeI CTAG 1 cut(s) 1019
MaeII ACGT 1 cut(s) 1197
MaeIII GTNAC 9 cut(s) 26, 112, 214, 777, 858, 877, 968, 1045, 1190
MalI GATC 8 cut(s) 252, 264, 368, 707, 726, 789, 987, 1239
MboI GATC 8 cut(s) 250, 262, 366, 705, 724, 787, 985, 1237
MflI RGATCY 3 cut(s) 705, 724, 985
MhlI GDGCHC 2 cut(s) 343, 520
MlsI TGGCCA 1 cut(s) 1139
MluCI AATT 7 cut(s) 50, 330, 811, 850, 1002, 1164, 1204
MluNI TGGCCA 1 cut(s) 1139
Mox20I TGGCCA 1 cut(s) 1139
MroXI GAANNNNTTC 2 cut(s) 480, 917
MscI TGGCCA 1 cut(s) 1139
MseI TTAA 6 cut(s) 138, 288, 347, 717, 810, 1203
MslI CAYNNNNRTG 1 cut(s) 660
Msp20I TGGCCA 1 cut(s) 1139
MspA1I CMGCKG 1 cut(s) 980
MspR9I CCNGG 2 cut(s) 821, 1088
Mva1269I GAATGC 1 cut(s) 464
MvaI CCWGG 2 cut(s) 821, 1088
MwoI GCNNNNNNNGC 4 cut(s) 218, 238, 398, 1136
NcoI CCATGG 1 cut(s) 882
NdeII GATC 8 cut(s) 250, 262, 366, 705, 724, 787, 985, 1237
NlaIII CATG 3 cut(s) 17, 886, 952
NlaIV GGNNCC 2 cut(s) 100, 726
NmuCI GTSAC 4 cut(s) 26, 112, 777, 968
NspI RCATGY 1 cut(s) 952
PaeR7I CTCGAG 1 cut(s) 1039
PagI TCATGA 1 cut(s) 13
PaqCI CACCTGC 1 cut(s) 134
PciSI GCTCTTC 2 cut(s) 369, 1244
PctI GAATGC 1 cut(s) 464
PdmI GAANNNNTTC 2 cut(s) 480, 917
PfeI GAWTC 3 cut(s) 172, 832, 844
Pfl23II CGTACG 1 cut(s) 783
PflMI CCANNNNNTGG 2 cut(s) 175, 909
PfoI TCCNGGA 1 cut(s) 1086
PkrI GCNGC 5 cut(s) 400, 979, 1071, 1233, 1256
Psp1406I AACGTT 1 cut(s) 1197
Psp6I CCWGG 2 cut(s) 819, 1086
PspEI GGTNACC 1 cut(s) 877
PspFI CCCAGC 1 cut(s) 311
PspGI CCWGG 2 cut(s) 819, 1086
PspLI CGTACG 1 cut(s) 783
PspN4I GGNNCC 2 cut(s) 100, 726
PspPI GGNCC 2 cut(s) 226, 900
PspXI VCTCGAGB 1 cut(s) 1039
PstNI CAGNNNCTG 1 cut(s) 175
PsuI RGATCY 3 cut(s) 705, 724, 985
PvuII CAGCTG 1 cut(s) 980
RsaI GTAC 3 cut(s) 630, 767, 785
RsaNI GTAC 3 cut(s) 629, 766, 784
RseI CAYNNNNRTG 1 cut(s) 660
SapI GCTCTTC 2 cut(s) 369, 1244
SaqAI TTAA 6 cut(s) 138, 288, 347, 717, 810, 1203
SatI GCNGC 5 cut(s) 399, 978, 1070, 1232, 1255
Sau3AI GATC 8 cut(s) 250, 262, 366, 705, 724, 787, 985, 1237
Sau96I GGNCC 2 cut(s) 226, 900
ScrFI CCNGG 2 cut(s) 821, 1088
SduI GDGCHC 2 cut(s) 343, 520
SfaNI GCATC 3 cut(s) 25, 399, 1111
Sfr274I CTCGAG 1 cut(s) 1039
SinI GGWCC 2 cut(s) 226, 900
SlaI CTCGAG 1 cut(s) 1039
SmiMI CAYNNNNRTG 1 cut(s) 660
SmlI CTYRAG 5 cut(s) 125, 203, 587, 671, 1039
SmoI CTYRAG 5 cut(s) 125, 203, 587, 671, 1039
Sse9I AATT 7 cut(s) 50, 330, 811, 850, 1002, 1164, 1204
SsiI CCGC 2 cut(s) 95, 422
SspI AATATT 1 cut(s) 1015
SspMI CTAG 1 cut(s) 1019
StyD4I CCNGG 2 cut(s) 819, 1086
StyI CCWWGG 3 cut(s) 545, 882, 1125
TaaI ACNGT 4 cut(s) 345, 500, 528, 783
TaiI ACGT 1 cut(s) 1200
TaqI TCGA 2 cut(s) 530, 1040
TasI AATT 7 cut(s) 50, 330, 811, 850, 1002, 1164, 1204
TfiI GAWTC 3 cut(s) 172, 832, 844
Tru1I TTAA 6 cut(s) 138, 288, 347, 717, 810, 1203
Tru9I TTAA 6 cut(s) 138, 288, 347, 717, 810, 1203
TscAI CASTG 2 cut(s) 121, 740
TseFI GTSAC 4 cut(s) 26, 112, 777, 968
TseI GCWGC 5 cut(s) 398, 977, 1069, 1231, 1254
Tsp45I GTSAC 4 cut(s) 26, 112, 777, 968
TspDTI ATGAA 2 cut(s) 30, 457
TspRI CASTG 2 cut(s) 121, 740
Van91I CCANNNNNTGG 2 cut(s) 175, 909
VpaK11BI GGWCC 2 cut(s) 226, 900
XapI RAATTY 1 cut(s) 850
XceI RCATGY 1 cut(s) 952
XcmI CCANNNNNNNNNTGG 1 cut(s) 1132
XhoI CTCGAG 1 cut(s) 1039
XmnI GAANNNNTTC 2 cut(s) 480, 917
XspI CTAG 1 cut(s) 1019
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.