FvH4_5g27840

26S proteasome non-ATPase regulatory subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
19054277 .. 19061388
7112 bp
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UTR
Exon/CDS
Intron
FvH4_5g27840.t1

Sequence Viewer

Length: 1425 bp
ATGTATACAAGGTCGTCACTTTTCTTCTCATTCATTCGTTCCTCTACCCTAAACAGCTCTGGTAGCTTCGATTTCACCACTCGATCTTCAACAATGGAAGGAGGAGGAGGCAATTTAGACGCGCAAATAGAGCAATTGCTCAACTTGGAGAAGCAGATGAGGCTCTCCGGCGACGTCGCCGGAACCAAGAAGGCCGCCACTGACATTCTTGAGCTCTGCTTCAAAGCCGGTGCTTGGAAGACTCTCAATGACCAGATCGTCGTCTTGTCCAAACGCCGTGGTCAGCTCAAGCAGGCTGTAACTGCAATGGTCCAGCAAGCTATGCAATACATTGATCAGACACCAGATATTGAAACTCGTATAGAGCTTATCAAAACACTAAATAATGTTTCTGCTGGAAAGATATATGTTGAAATTGAGAGAGCTCGGTTGATCAAAAGACTTGCTAAGATTAAGGAAGAGCAAGGCCATATTGCTGAAGCGGCTGATCTGATGCAAGAAATAGCGGTGGAGACTTTTGGTGCTATGGCAAAAACTGAGAAGATTGCATTCATTCTTGAACAAGTTCGTCTGTGCCTGGATCGGCAAGATTATGTTCGTGCTCAAATACTATCAAGGAAAATCAGTCCAAGAGTTTTTGATATTGATGCTTCAAAAGAAAAGAAAAAACCCAAAGAAGGTGACGGTGTTGTTGAAGAAGCTCCAGCTGATATACCATCGCTCCTAGAATTGAAAAGGATCTACTATGAATTAATGATAAGGTATTATATTCATAACAATGATTACCTTGAGATTAGCCGTTGCTATAAGGCGATATACGAGATTCCTTCTGTTAAAGAGAATCCAGCCCAGTGGATACCGGTCTTGAGGAAAATCTGTTGGTACTTGGTTCTGTCTCCATATGATCCAATGCAGTCCAGCCTTCTTAATTCCACCCTGGAAGATAAGAATCTTTCTGAGATCCCTTATTTTAGGTTGCTGTTGAAACAGGTGGTAACTATGGAGGTCATACAATGGACAGCTCTATGGAATACATACAAGGCTGAGTTTGAGAATGAGAAGAGCATGCTAGGAGGCTCTTTGGGTGACAAAGCAGCTGATGATCTGAAGCAGAGAATAATTGAACATAACATTCTTGTTGTTTCAAAGTACTACTCAAGGATTACCTTGAAGAGACTTGCAGAGCTACTGTGTCTGACTATGCAGGAAGCTGAGAAGCATCTCTCAGATATGGTTGTGTCCAAGGCACTGGTGGCCAAGATTGACAGACCAATAGGAATAGTCTGTTTCCAAACTTCAAAGGATAGCAACAATGTTCTGAATTCATGGGCTATGAACTTAGAGAAACTACTTGATCTTGTTGAGAAAAGCTGCCATCAGATACACAAAGAAACCATGATTCACAAAGCTGCTCTGAAGGCTTAA

Protein Analysis

475

Amino Acids

54.08

Weight (kDa)

8.44

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSMD12-CSN4_N PF22241 43 - 220 1.2e-68 PSMD12/CSN4, N-terminal
PSMD12-CSN4_N PF22241 243 - 280 6e-08 PSMD12/CSN4, N-terminal
PCI PF01399 365 - 431 5.3e-17 PCI domain
RPN5_C PF18098 437 - 469 9.9e-10 26S proteasome regulatory subunit RPN5 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 257
AatII GACGTC 1 cut(s) 177
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 122
AciI CCGC 3 cut(s) 195, 482, 506
AclWI GGATC 4 cut(s) 588, 746, 899, 955
AcoI YGGCCR 1 cut(s) 1254
AcsI RAATTY 1 cut(s) 1321
AcuI CTGAAG 2 cut(s) 498, 1127
AcyI GRCGYC 1 cut(s) 174
AfaI GTAC 2 cut(s) 884, 1151
AfiI CCNNNNNNNGG 2 cut(s) 234, 677
AgeI ACCGGT 1 cut(s) 859
AjnI CCWGG 2 cut(s) 576, 936
Alw21I GWGCWC 3 cut(s) 216, 427, 604
Alw26I GTCTC 3 cut(s) 506, 900, 1168
AlwI GGATC 4 cut(s) 588, 746, 899, 955
AoxI GGCC 3 cut(s) 192, 466, 1254
ApeKI GCWGC 3 cut(s) 1094, 1371, 1409
ApoI RAATTY 1 cut(s) 1321
AseI ATTAAT 1 cut(s) 752
AsiGI ACCGGT 1 cut(s) 859
Asp700I GAANNNNTTC 1 cut(s) 564
AspLEI GCGC 1 cut(s) 124
AspS9I GGNCC 1 cut(s) 310
AsuHPI GGTGA 3 cut(s) 67, 692, 1097
AvaII GGWCC 1 cut(s) 310
BalI TGGCCA 1 cut(s) 1256
BanII GRGCYC 2 cut(s) 216, 427
BbsI GAAGAC 1 cut(s) 245
Bbv12I GWGCWC 3 cut(s) 216, 427, 604
BbvI GCAGC 3 cut(s) 1106, 1358, 1396
BccI CCATC 2 cut(s) 724, 1383
BceAI ACGGC 2 cut(s) 261, 783
BciT130I CCWGG 2 cut(s) 578, 938
BciVI GTATCC 1 cut(s) 849
BclI TGATCA 2 cut(s) 334, 432
BcoDI GTCTC 3 cut(s) 506, 900, 1168
BfaI CTAG 2 cut(s) 725, 1070
BfuI GTATCC 1 cut(s) 849
BisI GCNGC 5 cut(s) 195, 483, 1095, 1372, 1410
BlsI GCNGC 5 cut(s) 196, 484, 1096, 1373, 1411
BmcAI AGTACT 1 cut(s) 1151
Bme1390I CCNGG 2 cut(s) 578, 938
Bme18I GGWCC 1 cut(s) 310
BmgT120I GGNCC 1 cut(s) 310
BmiI GGNNCC 1 cut(s) 184
BmrFI CCNGG 2 cut(s) 578, 938
BmrI ACTGGG 1 cut(s) 844
BmsI GCATC 3 cut(s) 483, 637, 1228
BmuI ACTGGG 1 cut(s) 844
BpiI GAAGAC 1 cut(s) 245
BpmI CTGGAG 1 cut(s) 687
BpuEI CTTGAG 5 cut(s) 230, 272, 809, 886, 1141
BsaBI GATNNNNATC 1 cut(s) 948
BsaHI GRCGYC 1 cut(s) 174
BsaJI CCNNGG 3 cut(s) 277, 936, 1242
BsaWI WCCGGW 1 cut(s) 859
BsaXI ACNNNNNCTCC 2 cut(s) 705, 735
Bsc4I CCNNNNNNNGG 2 cut(s) 234, 677
Bse118I RCCGGY 2 cut(s) 227, 859
Bse1I ACTGG 2 cut(s) 850, 1254
Bse3DI GCAATG 1 cut(s) 312
Bse8I GATNNNNATC 1 cut(s) 948
BseBI CCWGG 2 cut(s) 578, 938
BseDI CCNNGG 3 cut(s) 277, 936, 1242
BseJI GATNNNNATC 1 cut(s) 948
BseLI CCNNNNNNNGG 2 cut(s) 234, 677
BseMI GCAATG 1 cut(s) 312
BseMII CTCAG 5 cut(s) 528, 948, 1035, 1203, 1239
BseNI ACTGG 2 cut(s) 850, 1254
BseRI GAGGAG 2 cut(s) 117, 120
BseXI GCAGC 3 cut(s) 1106, 1358, 1396
Bsh1236I CGCG 1 cut(s) 122
BshFI GGCC 3 cut(s) 194, 468, 1256
BshTI ACCGGT 1 cut(s) 859
BsiHKAI GWGCWC 3 cut(s) 216, 427, 604
BsiSI CCGG 4 cut(s) 168, 180, 228, 860
BslI CCNNNNNNNGG 2 cut(s) 234, 677
BsmAI GTCTC 3 cut(s) 506, 900, 1168
BsmI GAATGC 1 cut(s) 548
BsnI GGCC 3 cut(s) 194, 468, 1256
Bsp1286I GDGCHC 3 cut(s) 216, 427, 604
BspACI CCGC 3 cut(s) 195, 482, 506
BspANI GGCC 3 cut(s) 194, 468, 1256
BspCNI CTCAG 5 cut(s) 529, 949, 1036, 1204, 1238
BspFNI CGCG 1 cut(s) 122
BspLI GGNNCC 1 cut(s) 184
BspPI GGATC 4 cut(s) 588, 746, 899, 955
BspQI GCTCTTC 2 cut(s) 453, 1055
BsrDI GCAATG 1 cut(s) 312
BsrFI RCCGGY 2 cut(s) 227, 859
BsrI ACTGG 2 cut(s) 850, 1254
BssAI RCCGGY 2 cut(s) 227, 859
BssECI CCNNGG 3 cut(s) 277, 936, 1242
BssNAI GTATAC 1 cut(s) 6
BssNI GRCGYC 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 1242
Bst1107I GTATAC 1 cut(s) 6
Bst2UI CCWGG 2 cut(s) 578, 938
Bst4CI ACNGT 2 cut(s) 686, 1191
Bst6I CTCTTC 3 cut(s) 453, 1055, 1166
BstACI GRCGYC 1 cut(s) 174
BstAPI GCANNNNNTGC 1 cut(s) 322
BstC8I GCNNGC 3 cut(s) 294, 318, 1067
BstDEI CTNAG 7 cut(s) 447, 537, 957, 1044, 1212, 1225, 1339
BstDSI CCRYGG 1 cut(s) 277
BstFNI CGCG 1 cut(s) 122
BstHHI GCGC 1 cut(s) 124
BstMAI GTCTC 3 cut(s) 506, 900, 1168
BstMWI GCNNNNNNNGC 8 cut(s) 63, 130, 160, 302, 322, 482, 1253, 1418
BstNI CCWGG 2 cut(s) 578, 938
BstNSI RCATGY 1 cut(s) 1069
BstSCI CCNGG 2 cut(s) 576, 936
BstUI CGCG 1 cut(s) 122
BstV1I GCAGC 3 cut(s) 1106, 1358, 1396
BstV2I GAAGAC 1 cut(s) 245
BstX2I RGATCY 2 cut(s) 738, 960
BstXI CCANNNNNNTGG 2 cut(s) 852, 1249
BstYI RGATCY 2 cut(s) 738, 960
BstZ17I GTATAC 1 cut(s) 6
BsuI GTATCC 1 cut(s) 849
BsuRI GGCC 3 cut(s) 194, 468, 1256
BtgI CCRYGG 1 cut(s) 277
BtgZI GCGATG 1 cut(s) 702
BtsIMutI CAGTG 3 cut(s) 198, 857, 1247
Cac8I GCNNGC 3 cut(s) 294, 318, 1067
CfoI GCGC 1 cut(s) 124
Cfr10I RCCGGY 2 cut(s) 227, 859
Cfr13I GGNCC 1 cut(s) 310
CseI GACGC 1 cut(s) 128
Csp6I GTAC 2 cut(s) 883, 1150
CspAI ACCGGT 1 cut(s) 859
CspCI CAANNNNNGTGG 2 cut(s) 259, 294
CviAII CATG 3 cut(s) 1066, 1326, 1396
CviQI GTAC 2 cut(s) 883, 1150
DdeI CTNAG 7 cut(s) 447, 537, 957, 1044, 1212, 1225, 1339
DrdI GACNNNNNNGTC 1 cut(s) 257
DseDI GACNNNNNNGTC 1 cut(s) 257
EaeI YGGCCR 1 cut(s) 1254
Eam1104I CTCTTC 3 cut(s) 453, 1055, 1166
EarI CTCTTC 3 cut(s) 453, 1055, 1166
Ecl136II GAGCTC 2 cut(s) 214, 425
Eco130I CCWWGG 1 cut(s) 1242
Eco24I GRGCYC 2 cut(s) 216, 427
Eco47I GGWCC 1 cut(s) 310
Eco53kI GAGCTC 2 cut(s) 214, 425
Eco57I CTGAAG 2 cut(s) 498, 1127
EcoICRI GAGCTC 2 cut(s) 214, 425
EcoRI GAATTC 1 cut(s) 1321
EcoRII CCWGG 2 cut(s) 576, 936
EcoT14I CCWWGG 1 cut(s) 1242
EcoT38I GRGCYC 2 cut(s) 216, 427
ErhI CCWWGG 1 cut(s) 1242
FaeI CATG 3 cut(s) 1069, 1329, 1399
FatI CATG 3 cut(s) 1065, 1325, 1395
FauNDI CATATG 1 cut(s) 901
FbaI TGATCA 2 cut(s) 334, 432
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 5 cut(s) 195, 483, 1095, 1372, 1410
FriOI GRGCYC 2 cut(s) 216, 427
Fsp4HI GCNGC 5 cut(s) 195, 483, 1095, 1372, 1410
FspBI CTAG 2 cut(s) 725, 1070
GlaI GCGC 1 cut(s) 123
GluI GCNGC 5 cut(s) 195, 483, 1095, 1372, 1410
GsuI CTGGAG 1 cut(s) 687
HaeIII GGCC 3 cut(s) 194, 468, 1256
HapII CCGG 4 cut(s) 168, 180, 228, 860
HgaI GACGC 1 cut(s) 128
HhaI GCGC 1 cut(s) 124
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 3 cut(s) 1069, 1329, 1399
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HinfI GANTC 5 cut(s) 241, 823, 841, 949, 1399
HpaII CCGG 4 cut(s) 168, 180, 228, 860
HphI GGTGA 3 cut(s) 67, 692, 1097
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 9 cut(s) 339, 492, 958, 1107, 1197, 1228, 1320, 1380, 1416
Hpy188III TCNNGA 3 cut(s) 209, 557, 865
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 3 cut(s) 176, 179, 263
HpyAV CCTTC 6 cut(s) 92, 184, 671, 837, 932, 1411
HpyCH4III ACNGT 2 cut(s) 686, 1191
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 7 cut(s) 305, 325, 496, 548, 913, 1181, 1204
HpyF10VI GCNNNNNNNGC 8 cut(s) 63, 130, 160, 302, 322, 482, 1253, 1418
HpyF3I CTNAG 7 cut(s) 447, 537, 957, 1044, 1212, 1225, 1339
HpySE526I ACGT 1 cut(s) 174
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 3 cut(s) 1069, 1329, 1399
HspAI GCGC 1 cut(s) 122
Ksp22I TGATCA 2 cut(s) 334, 432
LguI GCTCTTC 2 cut(s) 453, 1055
LmnI GCTCC 2 cut(s) 706, 726
Lsp1109I GCAGC 3 cut(s) 1106, 1358, 1396
LweI GCATC 3 cut(s) 483, 637, 1228
MaeI CTAG 2 cut(s) 725, 1070
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 5 cut(s) 15, 298, 680, 994, 1085
MboII GAAGA 9 cut(s) 16, 78, 250, 470, 553, 707, 953, 1072, 1183
MfeI CAATTG 1 cut(s) 134
MflI RGATCY 2 cut(s) 738, 960
MhlI GDGCHC 3 cut(s) 216, 427, 604
MlsI TGGCCA 1 cut(s) 1256
MluCI AATT 8 cut(s) 112, 134, 414, 728, 749, 928, 1119, 1321
MluNI TGGCCA 1 cut(s) 1256
MlyI GAGTC 1 cut(s) 235
MnlI CCTC 8 cut(s) 52, 95, 98, 101, 153, 861, 997, 1067
Mox20I TGGCCA 1 cut(s) 1256
MroXI GAANNNNTTC 1 cut(s) 564
MscI TGGCCA 1 cut(s) 1256
MseI TTAA 5 cut(s) 453, 752, 834, 927, 1423
MslI CAYNNNNRTG 1 cut(s) 777
Msp20I TGGCCA 1 cut(s) 1256
MspA1I CMGCKG 2 cut(s) 707, 1097
MspI CCGG 4 cut(s) 168, 180, 228, 860
MspR9I CCNGG 2 cut(s) 578, 938
MunI CAATTG 1 cut(s) 134
Mva1269I GAATGC 1 cut(s) 548
MvaI CCWGG 2 cut(s) 578, 938
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 8 cut(s) 63, 130, 160, 302, 322, 482, 1253, 1418
NdeI CATATG 1 cut(s) 901
NlaIII CATG 3 cut(s) 1069, 1329, 1399
NlaIV GGNNCC 1 cut(s) 184
NmuCI GTSAC 3 cut(s) 15, 680, 1085
NspI RCATGY 1 cut(s) 1069
PaeI GCATGC 1 cut(s) 1069
PciSI GCTCTTC 2 cut(s) 453, 1055
PctI GAATGC 1 cut(s) 548
PdmI GAANNNNTTC 1 cut(s) 564
PfeI GAWTC 4 cut(s) 823, 841, 949, 1399
PinAI ACCGGT 1 cut(s) 859
PkrI GCNGC 5 cut(s) 196, 484, 1096, 1373, 1411
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PshBI ATTAAT 1 cut(s) 752
Psp124BI GAGCTC 2 cut(s) 216, 427
Psp6I CCWGG 2 cut(s) 576, 936
PspGI CCWGG 2 cut(s) 576, 936
PspN4I GGNNCC 1 cut(s) 184
PspPI GGNCC 1 cut(s) 310
PsuI RGATCY 2 cut(s) 738, 960
PvuII CAGCTG 2 cut(s) 707, 1097
RsaI GTAC 2 cut(s) 884, 1151
RsaNI GTAC 2 cut(s) 883, 1150
RseI CAYNNNNRTG 1 cut(s) 777
SacI GAGCTC 2 cut(s) 216, 427
SapI GCTCTTC 2 cut(s) 453, 1055
SaqAI TTAA 5 cut(s) 453, 752, 834, 927, 1423
SatI GCNGC 5 cut(s) 195, 483, 1095, 1372, 1410
Sau96I GGNCC 1 cut(s) 310
ScaI AGTACT 1 cut(s) 1151
SchI GAGTC 1 cut(s) 235
ScrFI CCNGG 2 cut(s) 578, 938
SduI GDGCHC 3 cut(s) 216, 427, 604
SfaNI GCATC 3 cut(s) 483, 637, 1228
SinI GGWCC 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 777
SmlI CTYRAG 5 cut(s) 209, 287, 788, 865, 1156
SmoI CTYRAG 5 cut(s) 209, 287, 788, 865, 1156
SphI GCATGC 1 cut(s) 1069
Sse9I AATT 8 cut(s) 112, 134, 414, 728, 749, 928, 1119, 1321
SsiI CCGC 3 cut(s) 195, 482, 506
SspMI CTAG 2 cut(s) 725, 1070
SstI GAGCTC 2 cut(s) 216, 427
StyD4I CCNGG 2 cut(s) 576, 936
StyI CCWWGG 1 cut(s) 1242
TaaI ACNGT 2 cut(s) 686, 1191
TaiI ACGT 1 cut(s) 177
TaqI TCGA 2 cut(s) 69, 82
TasI AATT 8 cut(s) 112, 134, 414, 728, 749, 928, 1119, 1321
TatI WGTACW 1 cut(s) 1149
TauI GCSGC 2 cut(s) 197, 485
TfiI GAWTC 4 cut(s) 823, 841, 949, 1399
Tru1I TTAA 5 cut(s) 453, 752, 834, 927, 1423
Tru9I TTAA 5 cut(s) 453, 752, 834, 927, 1423
TscAI CASTG 3 cut(s) 205, 857, 1254
TseFI GTSAC 3 cut(s) 15, 680, 1085
TseI GCWGC 3 cut(s) 1094, 1371, 1409
Tsp45I GTSAC 3 cut(s) 15, 680, 1085
TspDTI ATGAA 6 cut(s) 22, 541, 761, 762, 1314, 1349
TspRI CASTG 3 cut(s) 205, 857, 1254
VpaK11BI GGWCC 1 cut(s) 310
VspI ATTAAT 1 cut(s) 752
XapI RAATTY 1 cut(s) 1321
XceI RCATGY 1 cut(s) 1069
XcmI CCANNNNNNNNNTGG 1 cut(s) 1249
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 564
XspI CTAG 2 cut(s) 725, 1070
ZraI GACGTC 1 cut(s) 175
ZrmI AGTACT 1 cut(s) 1151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.