Rw7G027880

26S proteasome non-ATPase regulatory subunit

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
36815505 .. 36820268
4764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G027880.1

Sequence Viewer

Length: 1269 bp
ATGAGGCTCTCCGGCGACGTGGCCGGAACCAAGAAGGCCGCCACTGACATTCTTGAGCTCTGCTTCAAGGCTGGTGCTTGGAAGACCCTCAATGACCAGATCCTTGTCTTGTCCAAACGCCGTGGTCAGCTCAAGCAGGCTGTAACTGCAATGGTCCAGCAAGCAATGCAATACATTGATCAGACACCAGATCTTGAAACTCGTATTGAGCTTATTAAAACACTAAATAATGTTTCTGCTGGAAAGATATATGTTGAAATTGAGAGAGCTCGGTTGATCAAAAGACTTGCAAAGATTAAGGAAGAGCAAGGCCTTATTGCTGAAGCTGCTGATCTGATGCAAGAAATTGCGGTGGAAACTTTTGGTGCTATGGCAAAAACTGAGAAGATTGCATTCATTCTTGAACAAGTTCGTCTGTGCTTGGACCGACAAGACTATGTTCGTGCTCAGATACTATCAAGGAAAATTAGTCCAAGAGCTTTTGATATTGATGCTTCAAAAGAAAAGAAAAAGCCTAAAGAAGGTGACGGTATTGTTGAAGAAGCTCCAGCTGATATACCATCGCTCCTAGAATTGAAAAGGATCTACTACGAATTAATGATAAGGTATTATTCTCATAACAATGATTACCTTGAGATTAGCCGTTGCTATAAGGCGATATACGAGATTCCTTCTGTTAGAGAGAATCCAGCCCAGTGGATACCGGTCTTGAGGAAAATATGTTGGTACTTGGTTCTGTCTCCATACGATCCAATGCAGTCCAGCCTTCTCAATTCCACCTTGGACGATAAGAATCTTTCCGAAATCCCTTATTTTAGGTTGCTGTTGAAACAGGTGGTAACTATGGAGGTCATACAATGGACAACTCTTTGGAATACATACAAGGCTGAGTTTGAGAATGAGAAGAGCATGCTAGGAGGCTCTTTGGGTGACAAAGCAGCTGAAGATCTAAAGCAGAGAATAATTGAACATAACATTCTTGTTGTTTCAAAGTACTACTCAAGGATTACGTTGAAGAGACTTGCAGAGCTATTGTGTCTGAGTATCCAGGAAGCTGAGAAGCATCTCTCGGATATGGTTGTGTCTAAGGCACTGGTGGCCAAGATTGACAGACCAATAGGAATAGTCTGTTTCCAAACTTCAAAGGATAGCAACAATGTTCTTAATTCGTGGGCTATGAACTTGGAGAAACTACTTGATCTTGTTGAGAAAAGCTGCCATCAGATACACAAAGAAACCATGGTTCACAAGGCTGCTCTGAAGGCTTAA

Protein Analysis

422

Amino Acids

48.3

Weight (kDa)

8.59

Isoelectric Point (pI)

38.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSMD12-CSN4_N PF22241 2 - 168 1.9e-63 PSMD12/CSN4, N-terminal
PSMD12-CSN4_N PF22241 191 - 228 4.7e-08 PSMD12/CSN4, N-terminal
PCI PF01399 313 - 379 8.5e-18 PCI domain
RPN5_C PF18098 385 - 417 4.3e-10 26S proteasome regulatory subunit RPN5 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 39, 350
AclWI GGATC 3 cut(s) 94, 590, 743
AcoI YGGCCR 2 cut(s) 21, 1098
AcuI CTGAAG 2 cut(s) 342, 963
AfaI GTAC 2 cut(s) 728, 995
AfiI CCNNNNNNNGG 1 cut(s) 521
AgeI ACCGGT 1 cut(s) 703
AjiI CACGTC 1 cut(s) 19
AjnI CCWGG 1 cut(s) 1047
Alw21I GWGCWC 3 cut(s) 60, 271, 448
Alw26I GTCTC 2 cut(s) 744, 1012
AlwI GGATC 3 cut(s) 94, 590, 743
AoxI GGCC 4 cut(s) 21, 36, 310, 1098
ApeKI GCWGC 4 cut(s) 326, 938, 1215, 1253
AseI ATTAAT 1 cut(s) 596
AsiGI ACCGGT 1 cut(s) 703
Asp700I GAANNNNTTC 1 cut(s) 408
AspS9I GGNCC 2 cut(s) 154, 424
AsuHPI GGTGA 2 cut(s) 536, 941
AvaII GGWCC 2 cut(s) 154, 424
BalI TGGCCA 1 cut(s) 1100
BanII GRGCYC 2 cut(s) 60, 271
BbsI GAAGAC 1 cut(s) 89
Bbv12I GWGCWC 3 cut(s) 60, 271, 448
BbvI GCAGC 4 cut(s) 313, 950, 1202, 1240
BccI CCATC 2 cut(s) 568, 1227
BceAI ACGGC 2 cut(s) 105, 627
BciT130I CCWGG 1 cut(s) 1049
BciVI GTATCC 2 cut(s) 693, 1055
BclI TGATCA 2 cut(s) 178, 276
BcoDI GTCTC 2 cut(s) 744, 1012
BfaI CTAG 2 cut(s) 569, 914
BfuI GTATCC 2 cut(s) 693, 1055
BglII AGATCT 2 cut(s) 190, 946
BisI GCNGC 5 cut(s) 39, 327, 939, 1216, 1254
BlsI GCNGC 5 cut(s) 40, 328, 940, 1217, 1255
BmcAI AGTACT 1 cut(s) 995
Bme1390I CCNGG 1 cut(s) 1049
Bme18I GGWCC 2 cut(s) 154, 424
BmgBI CACGTC 1 cut(s) 19
BmgT120I GGNCC 2 cut(s) 154, 424
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 1 cut(s) 1049
BmrI ACTGGG 1 cut(s) 688
BmsI GCATC 3 cut(s) 327, 481, 1072
BmuI ACTGGG 1 cut(s) 688
BpiI GAAGAC 1 cut(s) 89
BpmI CTGGAG 1 cut(s) 531
BpuEI CTTGAG 5 cut(s) 74, 116, 653, 730, 985
BsaBI GATNNNNATC 1 cut(s) 792
BsaJI CCNNGG 3 cut(s) 121, 780, 1239
BsaWI WCCGGW 1 cut(s) 703
BsaXI ACNNNNNCTCC 2 cut(s) 549, 579
Bsc4I CCNNNNNNNGG 1 cut(s) 521
Bse118I RCCGGY 1 cut(s) 703
Bse1I ACTGG 2 cut(s) 694, 1098
Bse3DI GCAATG 2 cut(s) 156, 171
Bse8I GATNNNNATC 1 cut(s) 792
BseBI CCWGG 1 cut(s) 1049
BseDI CCNNGG 3 cut(s) 121, 780, 1239
BseJI GATNNNNATC 1 cut(s) 792
BseLI CCNNNNNNNGG 1 cut(s) 521
BseMI GCAATG 2 cut(s) 156, 171
BseMII CTCAG 5 cut(s) 372, 461, 879, 1031, 1047
BseNI ACTGG 2 cut(s) 694, 1098
BseXI GCAGC 4 cut(s) 313, 950, 1202, 1240
BshFI GGCC 4 cut(s) 23, 38, 312, 1100
BshTI ACCGGT 1 cut(s) 703
BsiHKAI GWGCWC 3 cut(s) 60, 271, 448
BsiSI CCGG 3 cut(s) 12, 24, 704
BslI CCNNNNNNNGG 1 cut(s) 521
BsmAI GTCTC 2 cut(s) 744, 1012
BsmI GAATGC 1 cut(s) 392
BsnI GGCC 4 cut(s) 23, 38, 312, 1100
Bsp1286I GDGCHC 3 cut(s) 60, 271, 448
Bsp143I GATC 9 cut(s) 99, 178, 190, 276, 331, 582, 748, 946, 1198
Bsp19I CCATGG 1 cut(s) 1239
BspACI CCGC 2 cut(s) 39, 350
BspANI GGCC 4 cut(s) 23, 38, 312, 1100
BspCNI CTCAG 5 cut(s) 373, 460, 880, 1032, 1048
BspLI GGNNCC 1 cut(s) 28
BspPI GGATC 3 cut(s) 94, 590, 743
BspQI GCTCTTC 2 cut(s) 297, 899
BsrDI GCAATG 2 cut(s) 156, 171
BsrFI RCCGGY 1 cut(s) 703
BsrI ACTGG 2 cut(s) 694, 1098
BssAI RCCGGY 1 cut(s) 703
BssECI CCNNGG 3 cut(s) 121, 780, 1239
BssMI GATC 9 cut(s) 99, 178, 190, 276, 331, 582, 748, 946, 1198
BssT1I CCWWGG 2 cut(s) 780, 1239
Bst2UI CCWGG 1 cut(s) 1049
Bst4CI ACNGT 1 cut(s) 530
Bst6I CTCTTC 3 cut(s) 297, 899, 1010
BstAPI GCANNNNNTGC 1 cut(s) 166
BstC8I GCNNGC 3 cut(s) 138, 162, 911
BstDEI CTNAG 6 cut(s) 381, 447, 888, 1040, 1056, 1086
BstDSI CCRYGG 2 cut(s) 121, 1239
BstENI CCTNNNNNAGG 1 cut(s) 519
BstKTI GATC 9 cut(s) 102, 181, 193, 279, 334, 585, 751, 949, 1201
BstMAI GTCTC 2 cut(s) 744, 1012
BstMBI GATC 9 cut(s) 99, 178, 190, 276, 331, 582, 748, 946, 1198
BstMWI GCNNNNNNNGC 5 cut(s) 146, 166, 326, 1097, 1262
BstNI CCWGG 1 cut(s) 1049
BstNSI RCATGY 1 cut(s) 913
BstSCI CCNGG 1 cut(s) 1047
BstV1I GCAGC 4 cut(s) 313, 950, 1202, 1240
BstV2I GAAGAC 1 cut(s) 89
BstX2I RGATCY 4 cut(s) 99, 190, 582, 946
BstXI CCANNNNNNTGG 1 cut(s) 696
BstYI RGATCY 4 cut(s) 99, 190, 582, 946
BsuI GTATCC 2 cut(s) 693, 1055
BsuRI GGCC 4 cut(s) 23, 38, 312, 1100
BtgI CCRYGG 2 cut(s) 121, 1239
BtgZI GCGATG 1 cut(s) 546
BtrI CACGTC 1 cut(s) 19
BtsIMutI CAGTG 3 cut(s) 42, 701, 1091
Cac8I GCNNGC 3 cut(s) 138, 162, 911
Cfr10I RCCGGY 1 cut(s) 703
Cfr13I GGNCC 2 cut(s) 154, 424
Csp6I GTAC 2 cut(s) 727, 994
CspAI ACCGGT 1 cut(s) 703
CspCI CAANNNNNGTGG 2 cut(s) 103, 138
CviAII CATG 2 cut(s) 910, 1240
CviQI GTAC 2 cut(s) 727, 994
DdeI CTNAG 6 cut(s) 381, 447, 888, 1040, 1056, 1086
DpnI GATC 9 cut(s) 101, 180, 192, 278, 333, 584, 750, 948, 1200
DpnII GATC 9 cut(s) 99, 178, 190, 276, 331, 582, 748, 946, 1198
EaeI YGGCCR 2 cut(s) 21, 1098
Eam1104I CTCTTC 3 cut(s) 297, 899, 1010
EarI CTCTTC 3 cut(s) 297, 899, 1010
Ecl136II GAGCTC 2 cut(s) 58, 269
Eco130I CCWWGG 2 cut(s) 780, 1239
Eco147I AGGCCT 1 cut(s) 312
Eco24I GRGCYC 2 cut(s) 60, 271
Eco47I GGWCC 2 cut(s) 154, 424
Eco53kI GAGCTC 2 cut(s) 58, 269
Eco57I CTGAAG 2 cut(s) 342, 963
EcoICRI GAGCTC 2 cut(s) 58, 269
EcoNI CCTNNNNNAGG 1 cut(s) 519
EcoRII CCWGG 1 cut(s) 1047
EcoT14I CCWWGG 2 cut(s) 780, 1239
EcoT38I GRGCYC 2 cut(s) 60, 271
ErhI CCWWGG 2 cut(s) 780, 1239
FaeI CATG 2 cut(s) 913, 1243
FatI CATG 2 cut(s) 909, 1239
FbaI TGATCA 2 cut(s) 178, 276
Fnu4HI GCNGC 5 cut(s) 39, 327, 939, 1216, 1254
FriOI GRGCYC 2 cut(s) 60, 271
Fsp4HI GCNGC 5 cut(s) 39, 327, 939, 1216, 1254
FspBI CTAG 2 cut(s) 569, 914
GluI GCNGC 5 cut(s) 39, 327, 939, 1216, 1254
GsuI CTGGAG 1 cut(s) 531
HaeIII GGCC 4 cut(s) 23, 38, 312, 1100
HapII CCGG 3 cut(s) 12, 24, 704
Hin1II CATG 2 cut(s) 913, 1243
HinfI GANTC 3 cut(s) 667, 685, 793
HpaII CCGG 3 cut(s) 12, 24, 704
HphI GGTGA 2 cut(s) 536, 941
Hpy166II GTNNAC 1 cut(s) 1246
Hpy188I TCNGA 8 cut(s) 183, 336, 450, 802, 1041, 1072, 1224, 1260
Hpy188III TCNNGA 4 cut(s) 53, 194, 401, 709
Hpy8I GTNNAC 1 cut(s) 1246
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 5 cut(s) 28, 515, 681, 776, 1255
HpyCH4III ACNGT 1 cut(s) 530
HpyCH4IV ACGT 2 cut(s) 18, 1010
HpyCH4V TGCA 7 cut(s) 149, 169, 290, 340, 392, 757, 1025
HpyF10VI GCNNNNNNNGC 5 cut(s) 146, 166, 326, 1097, 1262
HpyF3I CTNAG 6 cut(s) 381, 447, 888, 1040, 1056, 1086
HpySE526I ACGT 2 cut(s) 18, 1010
Hsp92II CATG 2 cut(s) 913, 1243
Ksp22I TGATCA 2 cut(s) 178, 276
Kzo9I GATC 9 cut(s) 99, 178, 190, 276, 331, 582, 748, 946, 1198
LguI GCTCTTC 2 cut(s) 297, 899
LmnI GCTCC 2 cut(s) 550, 570
Lsp1109I GCAGC 4 cut(s) 313, 950, 1202, 1240
LweI GCATC 3 cut(s) 327, 481, 1072
MaeI CTAG 2 cut(s) 569, 914
MaeII ACGT 2 cut(s) 18, 1010
MaeIII GTNAC 4 cut(s) 142, 524, 838, 929
MalI GATC 9 cut(s) 101, 180, 192, 278, 333, 584, 750, 948, 1200
MboI GATC 9 cut(s) 99, 178, 190, 276, 331, 582, 748, 946, 1198
MboII GAAGA 7 cut(s) 94, 314, 397, 551, 916, 956, 1027
MflI RGATCY 4 cut(s) 99, 190, 582, 946
MhlI GDGCHC 3 cut(s) 60, 271, 448
MlsI TGGCCA 1 cut(s) 1100
MluCI AATT 8 cut(s) 258, 345, 465, 572, 593, 772, 963, 1165
MluNI TGGCCA 1 cut(s) 1100
MnlI CCTC 4 cut(s) 98, 705, 841, 911
Mox20I TGGCCA 1 cut(s) 1100
MroXI GAANNNNTTC 1 cut(s) 408
MscI TGGCCA 1 cut(s) 1100
MseI TTAA 5 cut(s) 216, 297, 596, 1164, 1267
MslI CAYNNNNRTG 1 cut(s) 621
Msp20I TGGCCA 1 cut(s) 1100
MspA1I CMGCKG 2 cut(s) 551, 941
MspI CCGG 3 cut(s) 12, 24, 704
MspR9I CCNGG 1 cut(s) 1049
Mva1269I GAATGC 1 cut(s) 392
MvaI CCWGG 1 cut(s) 1049
MwoI GCNNNNNNNGC 5 cut(s) 146, 166, 326, 1097, 1262
NcoI CCATGG 1 cut(s) 1239
NdeII GATC 9 cut(s) 99, 178, 190, 276, 331, 582, 748, 946, 1198
NlaIII CATG 2 cut(s) 913, 1243
NlaIV GGNNCC 1 cut(s) 28
NmuCI GTSAC 2 cut(s) 524, 929
NspI RCATGY 1 cut(s) 913
PaeI GCATGC 1 cut(s) 913
PceI AGGCCT 1 cut(s) 312
PciSI GCTCTTC 2 cut(s) 297, 899
PctI GAATGC 1 cut(s) 392
PdmI GAANNNNTTC 1 cut(s) 408
PfeI GAWTC 3 cut(s) 667, 685, 793
PfoI TCCNGGA 1 cut(s) 1047
PinAI ACCGGT 1 cut(s) 703
PkrI GCNGC 5 cut(s) 40, 328, 940, 1217, 1255
PshBI ATTAAT 1 cut(s) 596
Psp124BI GAGCTC 2 cut(s) 60, 271
Psp6I CCWGG 1 cut(s) 1047
PspGI CCWGG 1 cut(s) 1047
PspN4I GGNNCC 1 cut(s) 28
PspPI GGNCC 2 cut(s) 154, 424
PsuI RGATCY 4 cut(s) 99, 190, 582, 946
PvuII CAGCTG 2 cut(s) 551, 941
RsaI GTAC 2 cut(s) 728, 995
RsaNI GTAC 2 cut(s) 727, 994
RseI CAYNNNNRTG 1 cut(s) 621
SacI GAGCTC 2 cut(s) 60, 271
SapI GCTCTTC 2 cut(s) 297, 899
SaqAI TTAA 5 cut(s) 216, 297, 596, 1164, 1267
SatI GCNGC 5 cut(s) 39, 327, 939, 1216, 1254
Sau3AI GATC 9 cut(s) 99, 178, 190, 276, 331, 582, 748, 946, 1198
Sau96I GGNCC 2 cut(s) 154, 424
ScaI AGTACT 1 cut(s) 995
ScrFI CCNGG 1 cut(s) 1049
SduI GDGCHC 3 cut(s) 60, 271, 448
SfaNI GCATC 3 cut(s) 327, 481, 1072
SinI GGWCC 2 cut(s) 154, 424
SmiMI CAYNNNNRTG 1 cut(s) 621
SmlI CTYRAG 5 cut(s) 53, 131, 632, 709, 1000
SmoI CTYRAG 5 cut(s) 53, 131, 632, 709, 1000
SphI GCATGC 1 cut(s) 913
Sse9I AATT 8 cut(s) 258, 345, 465, 572, 593, 772, 963, 1165
SseBI AGGCCT 1 cut(s) 312
SsiI CCGC 2 cut(s) 39, 350
SspMI CTAG 2 cut(s) 569, 914
SstI GAGCTC 2 cut(s) 60, 271
StuI AGGCCT 1 cut(s) 312
StyD4I CCNGG 1 cut(s) 1047
StyI CCWWGG 2 cut(s) 780, 1239
TaaI ACNGT 1 cut(s) 530
TaiI ACGT 2 cut(s) 21, 1013
TaqII GACCGA 1 cut(s) 441
TasI AATT 8 cut(s) 258, 345, 465, 572, 593, 772, 963, 1165
TatI WGTACW 1 cut(s) 993
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 3 cut(s) 667, 685, 793
Tru1I TTAA 5 cut(s) 216, 297, 596, 1164, 1267
Tru9I TTAA 5 cut(s) 216, 297, 596, 1164, 1267
TscAI CASTG 3 cut(s) 49, 701, 1098
TseFI GTSAC 2 cut(s) 524, 929
TseI GCWGC 4 cut(s) 326, 938, 1215, 1253
Tsp45I GTSAC 2 cut(s) 524, 929
TspDTI ATGAA 2 cut(s) 385, 1193
TspRI CASTG 3 cut(s) 49, 701, 1098
VpaK11BI GGWCC 2 cut(s) 154, 424
VspI ATTAAT 1 cut(s) 596
XagI CCTNNNNNAGG 1 cut(s) 519
XceI RCATGY 1 cut(s) 913
XmnI GAANNNNTTC 1 cut(s) 408
XspI CTAG 2 cut(s) 569, 914
ZrmI AGTACT 1 cut(s) 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.