FvH4_1g23340

26S proteasome non-ATPase regulatory subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
15195177 .. 15200842
5666 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g23340.t5

Sequence Viewer

Length: 1329 bp
ATGGAAGGAGGAAGCGATTTAGATGCTCAGATAGAGAAATTTCTGAATGTGGAGAAACAAATGAGGCTCTCTGGTGACGTGGCGGGAACCAAGAAGGCTGCCACTGACATTCTTGAGCTTTGCTTCAAAGCTGGTGCTTGGAAGACCCTCAATGACCAGATTCTTGTCTTGTCCAAACGCCGTGGTCAGCTCAAGCAGGTCGTAACTGCATTGGTCCAGCAAGCAATGCAATATATTGATCAGACCCCTGACCTTGAAACTCGTATAGAGCTCATTAAAACACTAAATAATGTTTCTGCTGGGAAGATATATGTTGAAATTGAGAGAGCACGGTTAATAAAAAGACTTGCAAAGATCAAGGAAGAGCAAGGGCTTATTGCTGAAGCTGCTGATTTGATGCAAGAAACTGCGGTGGAAACATTTGGTGCCATGGCAAAAACTGAGAAGATTGCGTTCATTCTTGAACAGGTTCGTTTGTGCGAAGACCGTCAGGATTTTGTTCGTGCTCAAATACTGTCAAGGAAGATCAGTCCTAGGGTTTTTGATGTTGATGCTTCAAAAGAAAAGAAAAAACCCAAGGAAGGTGATAATATTGTTGAAGAAGCTCCTGCTGATGTACCATCGCTCTTGGAGTTAAAGCGGATCTACTATGAATTAATGATAAGGTATTATTCTCATAACAATGATTACCTTGAGATTTGCCGTTGCTATAAGGCGATATACGAGATCCCTTCCGTTAAAGAGGATCCAGCCCAGTGGATACCGTTATTGAGGAAAATCTGTTGGTACTTGGTTCTGTCACCATACGACCCAATGCAGTCAAGCCTACTTAATTCCACCCTGGAGGATAAGAATCTTTCTGAGATTCCATATTTTAGGTTACTGTTGAAACAAGTGGTAACTATGGAGGTCATACAATGGACCACTTTATGGAATAAGTTCGAGGATGAGTTTGAGAATGAGAAGAATATGCTAGGAGGCCCTTTGGGTGACAAAGCAGCTGAAGATCTAAAGCAGAGGATAATTGAACATAATATTCTAGTTGTTTCAAAGTATTACTCGAGGGTTACCTTGAAGAGACTTGCTGAGCTGCTCTGTCTAAGTATCCAGGAAGCTGAGAAGCATCTTTCAGAAATGGTTGTGTCCAAGGTGCTGGTTGCCAAGATTGACAGGCCAGTAGGCATAATTTGTTTCCAAACTGCAAAAGATAGTAACAATGTCCTTAATTCGTGGGCTACAAACTTGGAGACACTTCTTGATCTTGTGGAGAAGAGCTGCCACCAAATTCATAAAGAAACCATGGTTCACAAAGCAGCTCTGAAGGTGTGA

Protein Analysis

443

Amino Acids

50.68

Weight (kDa)

6.2

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSMD12-CSN4_N PF22241 25 - 202 1.1e-63 PSMD12/CSN4, N-terminal
PSMD12-CSN4_N PF22241 225 - 263 1.6e-09 PSMD12/CSN4, N-terminal
PCI PF01399 347 - 413 3.7e-17 PCI domain
RPN5_C PF18098 419 - 451 7.7e-11 26S proteasome regulatory subunit RPN5 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 187
AccB1I GGYRCC 1 cut(s) 425
AccB7I CCANNNNNTGG 1 cut(s) 930
AciI CCGC 3 cut(s) 83, 410, 640
AclWI GGATC 4 cut(s) 650, 721, 740, 753
AcsI RAATTY 2 cut(s) 38, 1284
AcuI CTGAAG 2 cut(s) 402, 1023
AfaI GTAC 2 cut(s) 618, 788
AfiI CCNNNNNNNGG 2 cut(s) 581, 930
AjiI CACGTC 1 cut(s) 79
AjnI CCWGG 2 cut(s) 840, 1107
Alw21I GWGCWC 3 cut(s) 273, 331, 508
Alw26I GTCTC 2 cut(s) 1072, 1241
AlwI GGATC 4 cut(s) 650, 721, 740, 753
Ama87I CYCGRG 1 cut(s) 1060
AoxI GGCC 2 cut(s) 979, 1172
ApeKI GCWGC 6 cut(s) 98, 386, 998, 1090, 1275, 1313
ApoI RAATTY 2 cut(s) 38, 1284
AseI ATTAAT 1 cut(s) 656
Asp700I GAANNNNTTC 2 cut(s) 468, 938
AspA2I CCTAGG 1 cut(s) 533
AspS9I GGNCC 3 cut(s) 214, 921, 980
AsuHPI GGTGA 4 cut(s) 86, 596, 792, 1001
AvaI CYCGRG 1 cut(s) 1060
AvaII GGWCC 2 cut(s) 214, 921
AvrII CCTAGG 1 cut(s) 533
BamHI GGATCC 1 cut(s) 745
BanI GGYRCC 1 cut(s) 425
BanII GRGCYC 1 cut(s) 273
BbsI GAAGAC 2 cut(s) 149, 489
Bbv12I GWGCWC 3 cut(s) 273, 331, 508
BbvI GCAGC 6 cut(s) 85, 373, 1010, 1077, 1262, 1325
BccI CCATC 1 cut(s) 628
BceAI ACGGC 2 cut(s) 165, 687
BcgI CGANNNNNNTGC 2 cut(s) 5, 39
BciT130I CCWGG 2 cut(s) 842, 1109
BciVI GTATCC 2 cut(s) 753, 1115
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 2 cut(s) 1072, 1241
BfaI CTAG 3 cut(s) 534, 974, 1040
BfuAI ACCTGC 1 cut(s) 187
BfuI GTATCC 2 cut(s) 753, 1115
BglII AGATCT 1 cut(s) 1006
BisI GCNGC 6 cut(s) 99, 387, 999, 1091, 1276, 1314
BlnI CCTAGG 1 cut(s) 533
BlpI GCTNAGC 1 cut(s) 1086
BlsI GCNGC 6 cut(s) 100, 388, 1000, 1092, 1277, 1315
Bme1390I CCNGG 2 cut(s) 842, 1109
Bme18I GGWCC 2 cut(s) 214, 921
BmeT110I CYCGRG 1 cut(s) 1060
BmgBI CACGTC 1 cut(s) 79
BmgT120I GGNCC 3 cut(s) 214, 921, 980
BmiI GGNNCC 3 cut(s) 88, 427, 747
BmrFI CCNGG 2 cut(s) 842, 1109
BmrI ACTGGG 1 cut(s) 748
BmsI GCATC 4 cut(s) 13, 387, 541, 1132
BmuI ACTGGG 1 cut(s) 748
BpiI GAAGAC 2 cut(s) 149, 489
BpmI CTGGAG 1 cut(s) 863
Bpu1102I GCTNAGC 1 cut(s) 1086
BpuEI CTTGAG 3 cut(s) 134, 176, 713
BsaBI GATNNNNATC 1 cut(s) 852
BsaJI CCNNGG 7 cut(s) 181, 429, 533, 576, 840, 1146, 1299
Bsc4I CCNNNNNNNGG 2 cut(s) 581, 930
Bse1I ACTGG 2 cut(s) 754, 1175
Bse3DI GCAATG 1 cut(s) 231
Bse8I GATNNNNATC 1 cut(s) 852
BseBI CCWGG 2 cut(s) 842, 1109
BseDI CCNNGG 7 cut(s) 181, 429, 533, 576, 840, 1146, 1299
BseGI GGATG 1 cut(s) 952
BseJI GATNNNNATC 1 cut(s) 852
BseLI CCNNNNNNNGG 2 cut(s) 581, 930
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 5 cut(s) 41, 432, 852, 1077, 1107
BseNI ACTGG 2 cut(s) 754, 1175
BseXI GCAGC 6 cut(s) 85, 373, 1010, 1077, 1262, 1325
BseYI CCCAGC 1 cut(s) 299
BshFI GGCC 2 cut(s) 981, 1174
BshNI GGYRCC 1 cut(s) 425
BsiHKAI GWGCWC 3 cut(s) 273, 331, 508
BsiHKCI CYCGRG 1 cut(s) 1060
BslI CCNNNNNNNGG 2 cut(s) 581, 930
BsmAI GTCTC 2 cut(s) 1072, 1241
BsnI GGCC 2 cut(s) 981, 1174
BsoBI CYCGRG 1 cut(s) 1060
Bsp1286I GDGCHC 3 cut(s) 273, 331, 508
Bsp143I GATC 8 cut(s) 238, 354, 525, 642, 726, 745, 1006, 1258
Bsp1720I GCTNAGC 1 cut(s) 1086
Bsp19I CCATGG 2 cut(s) 429, 1299
BspACI CCGC 3 cut(s) 83, 410, 640
BspANI GGCC 2 cut(s) 981, 1174
BspCNI CTCAG 5 cut(s) 40, 433, 853, 1078, 1108
BspLI GGNNCC 3 cut(s) 88, 427, 747
BspMI ACCTGC 1 cut(s) 187
BspPI GGATC 4 cut(s) 650, 721, 740, 753
BspQI GCTCTTC 2 cut(s) 357, 1265
BspT107I GGYRCC 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 2 cut(s) 754, 1175
BssECI CCNNGG 7 cut(s) 181, 429, 533, 576, 840, 1146, 1299
BssMI GATC 8 cut(s) 238, 354, 525, 642, 726, 745, 1006, 1258
BssT1I CCWWGG 5 cut(s) 429, 533, 576, 1146, 1299
Bst2UI CCWGG 2 cut(s) 842, 1109
Bst4CI ACNGT 5 cut(s) 333, 488, 516, 765, 885
Bst6I CTCTTC 3 cut(s) 357, 1070, 1265
BstAPI GCANNNNNTGC 1 cut(s) 226
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 6 cut(s) 27, 441, 861, 1086, 1100, 1116
BstDSI CCRYGG 3 cut(s) 181, 429, 1299
BstEII GGTNACC 1 cut(s) 1066
BstF5I GGATG 1 cut(s) 952
BstKTI GATC 8 cut(s) 241, 357, 528, 645, 729, 748, 1009, 1261
BstMAI GTCTC 2 cut(s) 1072, 1241
BstMBI GATC 8 cut(s) 238, 354, 525, 642, 726, 745, 1006, 1258
BstMWI GCNNNNNNNGC 2 cut(s) 226, 386
BstNI CCWGG 2 cut(s) 842, 1109
BstPI GGTNACC 1 cut(s) 1066
BstSCI CCNGG 2 cut(s) 840, 1107
BstV1I GCAGC 6 cut(s) 85, 373, 1010, 1077, 1262, 1325
BstV2I GAAGAC 2 cut(s) 149, 489
BstX2I RGATCY 4 cut(s) 642, 726, 745, 1006
BstXI CCANNNNNNTGG 2 cut(s) 756, 1153
BstYI RGATCY 4 cut(s) 642, 726, 745, 1006
BsuI GTATCC 2 cut(s) 753, 1115
BsuRI GGCC 2 cut(s) 981, 1174
BtgI CCRYGG 3 cut(s) 181, 429, 1299
BtgZI GCGATG 1 cut(s) 606
BtrI CACGTC 1 cut(s) 79
BtsCI GGATG 1 cut(s) 952
BtsIMutI CAGTG 2 cut(s) 102, 761
BveI ACCTGC 1 cut(s) 187
Cac8I GCNNGC 1 cut(s) 222
Cfr13I GGNCC 3 cut(s) 214, 921, 980
Csp6I GTAC 2 cut(s) 617, 787
CspCI CAANNNNNGTGG 2 cut(s) 163, 198
CviAII CATG 2 cut(s) 430, 1300
CviQI GTAC 2 cut(s) 617, 787
DdeI CTNAG 6 cut(s) 27, 441, 861, 1086, 1100, 1116
DpnI GATC 8 cut(s) 240, 356, 527, 644, 728, 747, 1008, 1260
DpnII GATC 8 cut(s) 238, 354, 525, 642, 726, 745, 1006, 1258
Eam1104I CTCTTC 3 cut(s) 357, 1070, 1265
EarI CTCTTC 3 cut(s) 357, 1070, 1265
Ecl136II GAGCTC 1 cut(s) 271
Eco130I CCWWGG 5 cut(s) 429, 533, 576, 1146, 1299
Eco24I GRGCYC 1 cut(s) 273
Eco47I GGWCC 2 cut(s) 214, 921
Eco53kI GAGCTC 1 cut(s) 271
Eco57I CTGAAG 2 cut(s) 402, 1023
Eco88I CYCGRG 1 cut(s) 1060
Eco91I GGTNACC 1 cut(s) 1066
EcoICRI GAGCTC 1 cut(s) 271
EcoO109I RGGNCCY 1 cut(s) 980
EcoO65I GGTNACC 1 cut(s) 1066
EcoRII CCWGG 2 cut(s) 840, 1107
EcoT14I CCWWGG 5 cut(s) 429, 533, 576, 1146, 1299
EcoT38I GRGCYC 1 cut(s) 273
ErhI CCWWGG 5 cut(s) 429, 533, 576, 1146, 1299
FaeI CATG 2 cut(s) 433, 1303
FatI CATG 2 cut(s) 429, 1299
FauI CCCGC 1 cut(s) 76
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 6 cut(s) 99, 387, 999, 1091, 1276, 1314
FokI GGATG 1 cut(s) 959
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 6 cut(s) 99, 387, 999, 1091, 1276, 1314
FspBI CTAG 3 cut(s) 534, 974, 1040
GluI GCNGC 6 cut(s) 99, 387, 999, 1091, 1276, 1314
GsaI CCCAGC 1 cut(s) 303
GsuI CTGGAG 1 cut(s) 863
HaeIII GGCC 2 cut(s) 981, 1174
Hin1II CATG 2 cut(s) 433, 1303
HinfI GANTC 3 cut(s) 160, 853, 865
HphI GGTGA 4 cut(s) 86, 596, 792, 1001
Hpy166II GTNNAC 1 cut(s) 1306
Hpy188I TCNGA 6 cut(s) 30, 45, 243, 862, 1132, 1320
Hpy188III TCNNGA 4 cut(s) 113, 461, 491, 1256
Hpy8I GTNNAC 1 cut(s) 1306
HpyAV CCTTC 4 cut(s) 88, 575, 741, 1315
HpyCH4III ACNGT 5 cut(s) 333, 488, 516, 765, 885
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 6 cut(s) 209, 229, 350, 400, 817, 1202
HpyF10VI GCNNNNNNNGC 2 cut(s) 226, 386
HpyF3I CTNAG 6 cut(s) 27, 441, 861, 1086, 1100, 1116
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 2 cut(s) 433, 1303
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 8 cut(s) 238, 354, 525, 642, 726, 745, 1006, 1258
LguI GCTCTTC 2 cut(s) 357, 1265
LmnI GCTCC 1 cut(s) 610
Lsp1109I GCAGC 6 cut(s) 85, 373, 1010, 1077, 1262, 1325
LweI GCATC 4 cut(s) 13, 387, 541, 1132
MaeI CTAG 3 cut(s) 534, 974, 1040
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 8 cut(s) 74, 202, 798, 879, 898, 989, 1066, 1211
MalI GATC 8 cut(s) 240, 356, 527, 644, 728, 747, 1008, 1260
MboI GATC 8 cut(s) 238, 354, 525, 642, 726, 745, 1006, 1258
MflI RGATCY 4 cut(s) 642, 726, 745, 1006
MhlI GDGCHC 3 cut(s) 273, 331, 508
MluCI AATT 8 cut(s) 38, 318, 653, 832, 1023, 1185, 1225, 1284
MroXI GAANNNNTTC 2 cut(s) 468, 938
MseI TTAA 7 cut(s) 276, 335, 635, 656, 738, 831, 1224
MslI CAYNNNNRTG 1 cut(s) 681
MspA1I CMGCKG 1 cut(s) 1001
MspR9I CCNGG 2 cut(s) 842, 1109
MvaI CCWGG 2 cut(s) 842, 1109
MwoI GCNNNNNNNGC 2 cut(s) 226, 386
NcoI CCATGG 2 cut(s) 429, 1299
NdeII GATC 8 cut(s) 238, 354, 525, 642, 726, 745, 1006, 1258
NlaIII CATG 2 cut(s) 433, 1303
NlaIV GGNNCC 3 cut(s) 88, 427, 747
NmuCI GTSAC 3 cut(s) 74, 798, 989
PaeR7I CTCGAG 1 cut(s) 1060
PciSI GCTCTTC 2 cut(s) 357, 1265
PdmI GAANNNNTTC 2 cut(s) 468, 938
PfeI GAWTC 3 cut(s) 160, 853, 865
PflMI CCANNNNNTGG 1 cut(s) 930
PfoI TCCNGGA 1 cut(s) 1107
PkrI GCNGC 6 cut(s) 100, 388, 1000, 1092, 1277, 1315
PshBI ATTAAT 1 cut(s) 656
Psp124BI GAGCTC 1 cut(s) 273
Psp6I CCWGG 2 cut(s) 840, 1107
PspEI GGTNACC 1 cut(s) 1066
PspFI CCCAGC 1 cut(s) 299
PspGI CCWGG 2 cut(s) 840, 1107
PspN4I GGNNCC 3 cut(s) 88, 427, 747
PspPI GGNCC 3 cut(s) 214, 921, 980
PspXI VCTCGAGB 1 cut(s) 1060
PsuI RGATCY 4 cut(s) 642, 726, 745, 1006
PvuII CAGCTG 1 cut(s) 1001
RsaI GTAC 2 cut(s) 618, 788
RsaNI GTAC 2 cut(s) 617, 787
RseI CAYNNNNRTG 1 cut(s) 681
SacI GAGCTC 1 cut(s) 273
SapI GCTCTTC 2 cut(s) 357, 1265
SaqAI TTAA 7 cut(s) 276, 335, 635, 656, 738, 831, 1224
SatI GCNGC 6 cut(s) 99, 387, 999, 1091, 1276, 1314
Sau3AI GATC 8 cut(s) 238, 354, 525, 642, 726, 745, 1006, 1258
Sau96I GGNCC 3 cut(s) 214, 921, 980
ScrFI CCNGG 2 cut(s) 842, 1109
SduI GDGCHC 3 cut(s) 273, 331, 508
SfaNI GCATC 4 cut(s) 13, 387, 541, 1132
Sfr274I CTCGAG 1 cut(s) 1060
SinI GGWCC 2 cut(s) 214, 921
SlaI CTCGAG 1 cut(s) 1060
SmiMI CAYNNNNRTG 1 cut(s) 681
SmlI CTYRAG 4 cut(s) 113, 191, 692, 1060
SmoI CTYRAG 4 cut(s) 113, 191, 692, 1060
Sse9I AATT 8 cut(s) 38, 318, 653, 832, 1023, 1185, 1225, 1284
SsiI CCGC 3 cut(s) 83, 410, 640
SspI AATATT 2 cut(s) 592, 1036
SspMI CTAG 3 cut(s) 534, 974, 1040
SstI GAGCTC 1 cut(s) 273
StyD4I CCNGG 2 cut(s) 840, 1107
StyI CCWWGG 5 cut(s) 429, 533, 576, 1146, 1299
TaaI ACNGT 5 cut(s) 333, 488, 516, 765, 885
TaiI ACGT 1 cut(s) 81
TaqI TCGA 2 cut(s) 942, 1061
TasI AATT 8 cut(s) 38, 318, 653, 832, 1023, 1185, 1225, 1284
TfiI GAWTC 3 cut(s) 160, 853, 865
Tru1I TTAA 7 cut(s) 276, 335, 635, 656, 738, 831, 1224
Tru9I TTAA 7 cut(s) 276, 335, 635, 656, 738, 831, 1224
TscAI CASTG 2 cut(s) 109, 761
TseFI GTSAC 3 cut(s) 74, 798, 989
TseI GCWGC 6 cut(s) 98, 386, 998, 1090, 1275, 1313
Tsp45I GTSAC 3 cut(s) 74, 798, 989
TspDTI ATGAA 3 cut(s) 445, 666, 1277
TspGWI ACGGA 1 cut(s) 724
TspRI CASTG 2 cut(s) 109, 761
Van91I CCANNNNNTGG 1 cut(s) 930
VpaK11BI GGWCC 2 cut(s) 214, 921
VspI ATTAAT 1 cut(s) 656
XapI RAATTY 2 cut(s) 38, 1284
XhoI CTCGAG 1 cut(s) 1060
XmaJI CCTAGG 1 cut(s) 533
XmnI GAANNNNTTC 2 cut(s) 468, 938
XspI CTAG 3 cut(s) 534, 974, 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.