Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001925.1

Orthogroup ID

OG0002585

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4802

Gene Structure 4802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001925.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

gccgtaactgcattggtccagcaagcaatgcaatatattgatcagacacctgatcttgaaactcgtatagagctgattaaaacactaaataatgtttctgctgggaagatatatgttgaaattgagagagcacggttaatcaaaagacttgcaaagatcaaggaagagcaagggcttattgctgaagctgctgatttgatgcaagaaactgcggtggaaacatttggtgctatggcaaaaactgagaagattgcattcattcttgaacaagttcgtttgtgtgaagaccgtcaggattatgttcgtgctcaaatactgtcgaggaagattagtccaagggtgtttgatgttgatacttcaaaagaaaagaaaaaacccaaggaaggtgataatgttgttgaagaagctcctgctgatgtaccatcgctcttggagttgaagcggatctactatgaattaatgatacggtattattctcataacaatgattaccttgagatttgccgttgctataaggcgatatacgagatcccttctgttaaagaggatccagctcagtggataccgatattgaggaaaatctgttggtacttggttctgtcaccgtacgatccaatgcagtcaagccttcttaattccaccctggaggataagaatctttcagagattccaaattttaggttacttttgaaacaagtggtaaccatggaggtcatacaatggaccacactctggaataagttcaaggatgagtttgagaatgagaagaacatgcttggaggttctttgggtgacaaagcagctgaagatctaaagcagaggataattgaacataatattctagttgtttcaaagtattactcgagggttactttgaagagacttgcagagctgctctgtctaagtatccaggaagctgagaagcatctttcagaaatggttgtgtccaaggcgctggtggccaagattgacaggccaataggcataatttgtttccgaactgcgaaagatagtaacaacgttcttaattcgtgggctacaaacttggagaagctgcttgatcttgttgagaagagctgccaccaaatacacaaagaaacaatggttcacaagacagctctgaaggtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031595 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048856 GO:0051603 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

376

Amino Acids

43.4

Weight (kDa)

6.71

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09900 AT5G09900 AT5G64760 AT5G64760 AT5G64760
fragaria_vesca	FvH4_1g23340 FvH4_1g23340 FvH4_1g23340 FvH4_1g23340 FvH4_1g23340 FvH4_5g27840
malus_domestica	MD02G1223100.v1.1 MD07G1091700.v1.1
prunus_persica	Prupe.2G117100_v2.0.a1 Prupe.2G119800_v2.0.a1
pyrus_communis	pycom07g07500
rosa_chinensis	RchiOBHm_Chr2g0118191 RchiOBHm_Chr7g0219741
rosa_laevigata	RLG00000002273 RLG00000018402
rosa_multiflora	Rmu_sc0001925.1_g000001 Rmu_sc0005014.1_g000001 Rmu_sc0007335.1_g000004
rosa_roxburghii	Rroxscaffold_2G00125830 Rroxscaffold_3G00239890
rosa_rugosa	Rorug02G0217200 Rorug07G0187400.1 Rorug07G0187500
rosa_samantha	Rh2AG273400 Rh2BG285600 Rh2DG281400 Rh2DG299400 Rh7AG331200 Rh7BG321000 Rh7CG348600 Rh7DG326700
rosa_wichuraiana	Rw2G021620 Rw2G021640 Rw2G021760 Rw7G027880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	732
AciI	CCGC	2 cut(s)	212, 442
AclI	AACGTT	1 cut(s)	1020
AclWI	GGATC	5 cut(s)	452, 523, 542, 555, 605
AcoI	YGGCCR	1 cut(s)	960
AcsI	RAATTY	1 cut(s)	673
AcuI	CTGAAG	2 cut(s)	204, 825
AfaI	GTAC	3 cut(s)	420, 590, 608
AfiI	CCNNNNNNNGG	2 cut(s)	383, 732
AjnI	CCWGG	2 cut(s)	642, 909
Alw21I	GWGCWC	2 cut(s)	133, 310
Alw26I	GTCTC	1 cut(s)	874
AlwI	GGATC	5 cut(s)	452, 523, 542, 555, 605
Ama87I	CYCGRG	1 cut(s)	862
AoxI	GGCC	2 cut(s)	960, 974
ApeKI	GCWGC	5 cut(s)	188, 800, 892, 1054, 1077
ApoI	RAATTY	1 cut(s)	673
AseI	ATTAAT	1 cut(s)	458
Asp700I	GAANNNNTTC	2 cut(s)	270, 740
AspLEI	GCGC	1 cut(s)	955
AspS9I	GGNCC	2 cut(s)	16, 723
AsuHPI	GGTGA	3 cut(s)	398, 594, 803
AvaI	CYCGRG	1 cut(s)	862
AvaII	GGWCC	2 cut(s)	16, 723
BalI	TGGCCA	1 cut(s)	962
BamHI	GGATCC	1 cut(s)	547
BarI	GAAGNNNNNNTAC	2 cut(s)	431, 463
BbsI	GAAGAC	1 cut(s)	291
Bbv12I	GWGCWC	2 cut(s)	133, 310
BbvI	GCAGC	5 cut(s)	175, 812, 879, 1041, 1064
BccI	CCATC	1 cut(s)	430
BceAI	ACGGC	1 cut(s)	489
BciT130I	CCWGG	2 cut(s)	644, 911
BciVI	GTATCC	2 cut(s)	555, 917
BclI	TGATCA	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	874
BfaI	CTAG	1 cut(s)	842
BfoI	RGCGCY	1 cut(s)	956
BfuI	GTATCC	2 cut(s)	555, 917
BglII	AGATCT	1 cut(s)	808
BisI	GCNGC	5 cut(s)	189, 801, 893, 1055, 1078
BlsI	GCNGC	5 cut(s)	190, 802, 894, 1056, 1079
Bme1390I	CCNGG	2 cut(s)	644, 911
Bme18I	GGWCC	2 cut(s)	16, 723
BmeT110I	CYCGRG	1 cut(s)	862
BmgT120I	GGNCC	2 cut(s)	16, 723
BmiI	GGNNCC	1 cut(s)	549
BmrFI	CCNGG	2 cut(s)	644, 911
BmsI	GCATC	2 cut(s)	189, 934
BpiI	GAAGAC	1 cut(s)	291
BpmI	CTGGAG	1 cut(s)	665
BpuEI	CTTGAG	1 cut(s)	515
BsaBI	GATNNNNATC	1 cut(s)	654
BsaJI	CCNNGG	5 cut(s)	335, 378, 642, 705, 948
Bsc4I	CCNNNNNNNGG	2 cut(s)	383, 732
Bse3DI	GCAATG	1 cut(s)	33
Bse8I	GATNNNNATC	1 cut(s)	654
BseBI	CCWGG	2 cut(s)	644, 911
BseDI	CCNNGG	5 cut(s)	335, 378, 642, 705, 948
BseGI	GGATG	1 cut(s)	754
BseJI	GATNNNNATC	1 cut(s)	654
BseLI	CCNNNNNNNGG	2 cut(s)	383, 732
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	3 cut(s)	234, 569, 909
BseXI	GCAGC	5 cut(s)	175, 812, 879, 1041, 1064
BseYI	CCCAGC	1 cut(s)	101
BshFI	GGCC	2 cut(s)	962, 976
BsiHKAI	GWGCWC	2 cut(s)	133, 310
BsiHKCI	CYCGRG	1 cut(s)	862
BsiWI	CGTACG	1 cut(s)	606
BslI	CCNNNNNNNGG	2 cut(s)	383, 732
BsmAI	GTCTC	1 cut(s)	874
BsmI	GAATGC	1 cut(s)	254
BsnI	GGCC	2 cut(s)	962, 976
BsoBI	CYCGRG	1 cut(s)	862
Bsp1286I	GDGCHC	2 cut(s)	133, 310
Bsp143I	GATC	9 cut(s)	40, 52, 156, 444, 528, 547, 610, 808, 1060
Bsp19I	CCATGG	1 cut(s)	705
BspACI	CCGC	2 cut(s)	212, 442
BspANI	GGCC	2 cut(s)	962, 976
BspCNI	CTCAG	3 cut(s)	235, 568, 910
BspLI	GGNNCC	1 cut(s)	549
BspPI	GGATC	5 cut(s)	452, 523, 542, 555, 605
BspQI	GCTCTTC	2 cut(s)	159, 1067
BsrDI	GCAATG	1 cut(s)	33
BssECI	CCNNGG	5 cut(s)	335, 378, 642, 705, 948
BssMI	GATC	9 cut(s)	40, 52, 156, 444, 528, 547, 610, 808, 1060
BssT1I	CCWWGG	4 cut(s)	335, 378, 705, 948
Bst2UI	CCWGG	2 cut(s)	644, 911
Bst4CI	ACNGT	5 cut(s)	135, 290, 318, 468, 606
Bst6I	CTCTTC	3 cut(s)	159, 872, 1067
BstAPI	GCANNNNNTGC	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	4 cut(s)	243, 555, 902, 918
BstDSI	CCRYGG	1 cut(s)	705
BstEII	GGTNACC	1 cut(s)	700
BstF5I	GGATG	1 cut(s)	754
BstH2I	RGCGCY	1 cut(s)	956
BstHHI	GCGC	1 cut(s)	955
BstKTI	GATC	9 cut(s)	43, 55, 159, 447, 531, 550, 613, 811, 1063
BstMAI	GTCTC	1 cut(s)	874
BstMBI	GATC	9 cut(s)	40, 52, 156, 444, 528, 547, 610, 808, 1060
BstMWI	GCNNNNNNNGC	4 cut(s)	8, 28, 188, 959
BstNI	CCWGG	2 cut(s)	644, 911
BstNSI	RCATGY	1 cut(s)	775
BstPI	GGTNACC	1 cut(s)	700
BstSCI	CCNGG	2 cut(s)	642, 909
BstV1I	GCAGC	5 cut(s)	175, 812, 879, 1041, 1064
BstV2I	GAAGAC	1 cut(s)	291
BstX2I	RGATCY	4 cut(s)	444, 528, 547, 808
BstXI	CCANNNNNNTGG	2 cut(s)	558, 955
BstYI	RGATCY	4 cut(s)	444, 528, 547, 808
BsuI	GTATCC	2 cut(s)	555, 917
BsuRI	GGCC	2 cut(s)	962, 976
BtgI	CCRYGG	1 cut(s)	705
BtgZI	GCGATG	1 cut(s)	408
BtsCI	GGATG	1 cut(s)	754
BtsIMutI	CAGTG	1 cut(s)	563
Cac8I	GCNNGC	1 cut(s)	24
CfoI	GCGC	1 cut(s)	955
Cfr13I	GGNCC	2 cut(s)	16, 723
Csp6I	GTAC	3 cut(s)	419, 589, 607
CviAII	CATG	2 cut(s)	706, 772
CviQI	GTAC	3 cut(s)	419, 589, 607
DdeI	CTNAG	4 cut(s)	243, 555, 902, 918
DpnI	GATC	9 cut(s)	42, 54, 158, 446, 530, 549, 612, 810, 1062
DpnII	GATC	9 cut(s)	40, 52, 156, 444, 528, 547, 610, 808, 1060
EaeI	YGGCCR	1 cut(s)	960
Eam1104I	CTCTTC	3 cut(s)	159, 872, 1067
EarI	CTCTTC	3 cut(s)	159, 872, 1067
Eco130I	CCWWGG	4 cut(s)	335, 378, 705, 948
Eco47I	GGWCC	2 cut(s)	16, 723
Eco57I	CTGAAG	2 cut(s)	204, 825
Eco88I	CYCGRG	1 cut(s)	862
Eco91I	GGTNACC	1 cut(s)	700
EcoO65I	GGTNACC	1 cut(s)	700
EcoRII	CCWGG	2 cut(s)	642, 909
EcoT14I	CCWWGG	4 cut(s)	335, 378, 705, 948
ErhI	CCWWGG	4 cut(s)	335, 378, 705, 948
FaeI	CATG	2 cut(s)	709, 775
FatI	CATG	2 cut(s)	705, 771
FbaI	TGATCA	1 cut(s)	40
Fnu4HI	GCNGC	5 cut(s)	189, 801, 893, 1055, 1078
FokI	GGATG	1 cut(s)	761
Fsp4HI	GCNGC	5 cut(s)	189, 801, 893, 1055, 1078
FspBI	CTAG	1 cut(s)	842
GlaI	GCGC	1 cut(s)	954
GluI	GCNGC	5 cut(s)	189, 801, 893, 1055, 1078
GsaI	CCCAGC	1 cut(s)	105
GsuI	CTGGAG	1 cut(s)	665
HaeII	RGCGCY	1 cut(s)	956
HaeIII	GGCC	2 cut(s)	962, 976
HhaI	GCGC	1 cut(s)	955
Hin1II	CATG	2 cut(s)	709, 775
Hin6I	GCGC	1 cut(s)	953
HinP1I	GCGC	1 cut(s)	953
HinfI	GANTC	2 cut(s)	655, 667
HphI	GGTGA	3 cut(s)	398, 594, 803
Hpy166II	GTNNAC	1 cut(s)	1108
Hpy188I	TCNGA	5 cut(s)	45, 664, 934, 998, 1122
Hpy188III	TCNNGA	4 cut(s)	56, 263, 293, 733
Hpy8I	GTNNAC	1 cut(s)	1108
HpyAV	CCTTC	4 cut(s)	377, 543, 638, 1117
HpyCH4III	ACNGT	5 cut(s)	135, 290, 318, 468, 606
HpyCH4IV	ACGT	1 cut(s)	1020
HpyCH4V	TGCA	7 cut(s)	11, 31, 152, 202, 254, 619, 887
HpyF10VI	GCNNNNNNNGC	4 cut(s)	8, 28, 188, 959
HpyF3I	CTNAG	4 cut(s)	243, 555, 902, 918
HpySE526I	ACGT	1 cut(s)	1020
Hsp92II	CATG	2 cut(s)	709, 775
HspAI	GCGC	1 cut(s)	953
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	9 cut(s)	40, 52, 156, 444, 528, 547, 610, 808, 1060
LguI	GCTCTTC	2 cut(s)	159, 1067
LmnI	GCTCC	1 cut(s)	412
Lsp1109I	GCAGC	5 cut(s)	175, 812, 879, 1041, 1064
LweI	GCATC	2 cut(s)	189, 934
MaeI	CTAG	1 cut(s)	842
MaeII	ACGT	1 cut(s)	1020
MaeIII	GTNAC	7 cut(s)	4, 600, 681, 700, 791, 868, 1013
MalI	GATC	9 cut(s)	42, 54, 158, 446, 530, 549, 612, 810, 1062
MboI	GATC	9 cut(s)	40, 52, 156, 444, 528, 547, 610, 808, 1060
MflI	RGATCY	4 cut(s)	444, 528, 547, 808
MhlI	GDGCHC	2 cut(s)	133, 310
MlsI	TGGCCA	1 cut(s)	962
MluCI	AATT	7 cut(s)	120, 455, 634, 673, 825, 987, 1027
MluNI	TGGCCA	1 cut(s)	962
MnlI	CCTC	8 cut(s)	315, 538, 567, 640, 703, 773, 813, 858
Mox20I	TGGCCA	1 cut(s)	962
MroXI	GAANNNNTTC	2 cut(s)	270, 740
MscI	TGGCCA	1 cut(s)	962
MseI	TTAA	6 cut(s)	78, 137, 458, 540, 633, 1026
MslI	CAYNNNNRTG	1 cut(s)	483
Msp20I	TGGCCA	1 cut(s)	962
MspA1I	CMGCKG	1 cut(s)	803
MspR9I	CCNGG	2 cut(s)	644, 911
Mva1269I	GAATGC	1 cut(s)	254
MvaI	CCWGG	2 cut(s)	644, 911
MwoI	GCNNNNNNNGC	4 cut(s)	8, 28, 188, 959
NcoI	CCATGG	1 cut(s)	705
NdeII	GATC	9 cut(s)	40, 52, 156, 444, 528, 547, 610, 808, 1060
NlaIII	CATG	2 cut(s)	709, 775
NlaIV	GGNNCC	1 cut(s)	549
NmuCI	GTSAC	2 cut(s)	600, 791
NspI	RCATGY	1 cut(s)	775
PaeR7I	CTCGAG	1 cut(s)	862
PciSI	GCTCTTC	2 cut(s)	159, 1067
PctI	GAATGC	1 cut(s)	254
PdmI	GAANNNNTTC	2 cut(s)	270, 740
PfeI	GAWTC	2 cut(s)	655, 667
Pfl23II	CGTACG	1 cut(s)	606
PflMI	CCANNNNNTGG	1 cut(s)	732
PfoI	TCCNGGA	1 cut(s)	909
PkrI	GCNGC	5 cut(s)	190, 802, 894, 1056, 1079
PshBI	ATTAAT	1 cut(s)	458
Psp1406I	AACGTT	1 cut(s)	1020
Psp6I	CCWGG	2 cut(s)	642, 909
PspEI	GGTNACC	1 cut(s)	700
PspFI	CCCAGC	1 cut(s)	101
PspGI	CCWGG	2 cut(s)	642, 909
PspLI	CGTACG	1 cut(s)	606
PspN4I	GGNNCC	1 cut(s)	549
PspPI	GGNCC	2 cut(s)	16, 723
PspXI	VCTCGAGB	1 cut(s)	862
PsuI	RGATCY	4 cut(s)	444, 528, 547, 808
PvuII	CAGCTG	1 cut(s)	803
RsaI	GTAC	3 cut(s)	420, 590, 608
RsaNI	GTAC	3 cut(s)	419, 589, 607
RseI	CAYNNNNRTG	1 cut(s)	483
SapI	GCTCTTC	2 cut(s)	159, 1067
SaqAI	TTAA	6 cut(s)	78, 137, 458, 540, 633, 1026
SatI	GCNGC	5 cut(s)	189, 801, 893, 1055, 1078
Sau3AI	GATC	9 cut(s)	40, 52, 156, 444, 528, 547, 610, 808, 1060
Sau96I	GGNCC	2 cut(s)	16, 723
ScrFI	CCNGG	2 cut(s)	644, 911
SduI	GDGCHC	2 cut(s)	133, 310
SfaNI	GCATC	2 cut(s)	189, 934
Sfr274I	CTCGAG	1 cut(s)	862
SinI	GGWCC	2 cut(s)	16, 723
SlaI	CTCGAG	1 cut(s)	862
SmiMI	CAYNNNNRTG	1 cut(s)	483
SmlI	CTYRAG	2 cut(s)	494, 862
SmoI	CTYRAG	2 cut(s)	494, 862
Sse9I	AATT	7 cut(s)	120, 455, 634, 673, 825, 987, 1027
SsiI	CCGC	2 cut(s)	212, 442
SspI	AATATT	1 cut(s)	838
SspMI	CTAG	1 cut(s)	842
StyD4I	CCNGG	2 cut(s)	642, 909
StyI	CCWWGG	4 cut(s)	335, 378, 705, 948
TaaI	ACNGT	5 cut(s)	135, 290, 318, 468, 606
TaiI	ACGT	1 cut(s)	1023
TaqI	TCGA	2 cut(s)	320, 863
TasI	AATT	7 cut(s)	120, 455, 634, 673, 825, 987, 1027
TfiI	GAWTC	2 cut(s)	655, 667
Tru1I	TTAA	6 cut(s)	78, 137, 458, 540, 633, 1026
Tru9I	TTAA	6 cut(s)	78, 137, 458, 540, 633, 1026
TscAI	CASTG	1 cut(s)	563
TseFI	GTSAC	2 cut(s)	600, 791
TseI	GCWGC	5 cut(s)	188, 800, 892, 1054, 1077
Tsp45I	GTSAC	2 cut(s)	600, 791
TspDTI	ATGAA	2 cut(s)	247, 468
TspRI	CASTG	1 cut(s)	563
Van91I	CCANNNNNTGG	1 cut(s)	732
VpaK11BI	GGWCC	2 cut(s)	16, 723
VspI	ATTAAT	1 cut(s)	458
XapI	RAATTY	1 cut(s)	673
XceI	RCATGY	1 cut(s)	775
XcmI	CCANNNNNNNNNTGG	1 cut(s)	955
XhoI	CTCGAG	1 cut(s)	862
XmnI	GAANNNNTTC	2 cut(s)	270, 740
XspI	CTAG	1 cut(s)	842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.