Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002585

Physical Location & Seq

Genomic Coordinates Forward (+)

32566326 .. 32573501

Gene Structure 7176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG273400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGAAGGAGGAAGTGACTTAGATGCCCAAATAGAGAAATTGCTGAATGTGGAGAAACAAATGAGACTCTCTGGTGATGTGGCGGGAACCAAGAAGGCTGTCACTGACATTCTTGAGCTTTGCTTCAAAGCAGGTGCTTGGAAGACCCTCAATGACCAGATTCTGGTCTTGTCCAAACGCCGTGGTCAGCTCAAGCAGGCCGTAACTGCATTGGTCCAGCAAGCAATGCAATATATTGATCAGACACCTGATCTTGAAACTCGTATAGAGCTGATTAAAACACTAAATAATGTTTCTGCTGGGAAGATATATGTTGAAATTGAGAGAGCACGGTTAATCAAAAGACTTGCAAAGATCAAGGAAGAGCAAGGGCTTATTGCTGAAGCTGCTGATTTGATGCAAGAAACTGCGGTGGAAACATTTGGTGCTATGGCAAAAACTGAGAAGATTGCATTCATTCTTGAACAAGTTCGTTTGTGTGAAGACCGTCAGGATTATGTTCGTGCTCAAATACTGTCGAGGAAGATTAGTCCAAGGGTGTTTGATGTTGATACTTCAAAAGAAAAGAAAAAACCCAAGGAAGGTGATAATGTTGTTGAAGAAGCTCCTGCTGATGTACCATCACTCTTGGAGTTGAAGCGGATCTACCATGAATTAATGATACGGTATTATTCTCATAACAATGATTACCTTGAGATTTGCCGTTGCTATAAGGCGATATACGAGATCCCTTCTGTTAAAGAGGATCCAGCTCAGTGGATACCGATATTGAGGAAAATCTGTTGGTACTTGGTTCTGTCACCATACGATCCAATGCAGTCAAGCCTTCTTAATTCCACCCTGGAGGATAAGAATCTTTCAGAGATTCCAAATTTTAGGTTACTTTTGAAACAAGTGGTAACCATGGAGGTCATACAATGGACCACACTCTGGAATAAGTTCAAGCATGAGTTTGAGAATGAGAAGAACATGCTTGGAGGTTCTTTGGGTGACAAAGCAGCTGAAGATCTAAAGCAGAGGATAATTGAACATGTAGGTTTGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031595 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048856 GO:0051603 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

348

Amino Acids

39.94

Weight (kDa)

6.0

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSMD12-CSN4_N	PF22241	11 - 188	2.4e-65	PSMD12/CSN4, N-terminal
PSMD12-CSN4_N	PF22241	211 - 249	6.4e-09	PSMD12/CSN4, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09900 AT5G09900 AT5G64760 AT5G64760 AT5G64760
fragaria_vesca	FvH4_1g23340 FvH4_1g23340 FvH4_1g23340 FvH4_1g23340 FvH4_1g23340 FvH4_5g27840
malus_domestica	MD02G1223100.v1.1 MD07G1091700.v1.1
prunus_persica	Prupe.2G117100_v2.0.a1 Prupe.2G119800_v2.0.a1
pyrus_communis	pycom07g07500
rosa_chinensis	RchiOBHm_Chr2g0118191 RchiOBHm_Chr7g0219741
rosa_laevigata	RLG00000002273 RLG00000018402
rosa_multiflora	Rmu_sc0001925.1_g000001 Rmu_sc0005014.1_g000001 Rmu_sc0007335.1_g000004
rosa_roxburghii	Rroxscaffold_2G00125830 Rroxscaffold_3G00239890
rosa_rugosa	Rorug02G0217200 Rorug07G0187400.1 Rorug07G0187500
rosa_samantha	Rh2AG273400 Rh2BG285600 Rh2DG281400 Rh2DG299400 Rh7AG331200 Rh7BG321000 Rh7CG348600 Rh7DG326700
rosa_wichuraiana	Rw2G021620 Rw2G021640 Rw2G021760 Rw7G027880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	122
Acc36I	ACCTGC	1 cut(s)	122
AccB7I	CCANNNNNTGG	2 cut(s)	163, 930
AciI	CCGC	3 cut(s)	83, 410, 640
AclWI	GGATC	5 cut(s)	650, 721, 740, 753, 803
AcsI	RAATTY	1 cut(s)	871
AcuI	CTGAAG	2 cut(s)	402, 1023
AfaI	GTAC	2 cut(s)	618, 788
AfiI	CCNNNNNNNGG	3 cut(s)	163, 581, 930
AflIII	ACRYGT	1 cut(s)	1030
AjnI	CCWGG	1 cut(s)	840
AluBI	AGCT	7 cut(s)	118, 190, 271, 386, 605, 752, 1001
AluI	AGCT	7 cut(s)	118, 190, 271, 386, 605, 752, 1001
Alw21I	GWGCWC	2 cut(s)	331, 508
Alw26I	GTCTC	1 cut(s)	58
AlwI	GGATC	5 cut(s)	650, 721, 740, 753, 803
AlwNI	CAGNNNCTG	1 cut(s)	163
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	2 cut(s)	386, 998
ApoI	RAATTY	1 cut(s)	871
AseI	ATTAAT	1 cut(s)	656
Asp700I	GAANNNNTTC	2 cut(s)	468, 938
AspS9I	GGNCC	2 cut(s)	214, 921
AsuHPI	GGTGA	4 cut(s)	86, 596, 792, 1001
AvaII	GGWCC	2 cut(s)	214, 921
BamHI	GGATCC	1 cut(s)	745
BarI	GAAGNNNNNNTAC	2 cut(s)	629, 661
BbsI	GAAGAC	2 cut(s)	149, 489
Bbv12I	GWGCWC	2 cut(s)	331, 508
BbvI	GCAGC	2 cut(s)	373, 1010
BccI	CCATC	1 cut(s)	628
BceAI	ACGGC	3 cut(s)	165, 185, 687
BciT130I	CCWGG	1 cut(s)	842
BciVI	GTATCC	1 cut(s)	753
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	58
BfaI	CTAG	1 cut(s)	1045
BfuAI	ACCTGC	1 cut(s)	122
BfuI	GTATCC	1 cut(s)	753
BglII	AGATCT	1 cut(s)	1006
BisI	GCNGC	2 cut(s)	387, 999
BlsI	GCNGC	2 cut(s)	388, 1000
Bme1390I	CCNGG	1 cut(s)	842
Bme18I	GGWCC	2 cut(s)	214, 921
BmgT120I	GGNCC	2 cut(s)	214, 921
BmiI	GGNNCC	2 cut(s)	88, 747
BmrFI	CCNGG	1 cut(s)	842
BmsI	GCATC	2 cut(s)	13, 387
BpiI	GAAGAC	2 cut(s)	149, 489
BpmI	CTGGAG	1 cut(s)	863
BpuEI	CTTGAG	3 cut(s)	134, 176, 713
BsaBI	GATNNNNATC	1 cut(s)	852
BsaJI	CCNNGG	5 cut(s)	181, 533, 576, 840, 903
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 581, 930
Bse3DI	GCAATG	1 cut(s)	231
Bse8I	GATNNNNATC	1 cut(s)	852
BseBI	CCWGG	1 cut(s)	842
BseDI	CCNNGG	5 cut(s)	181, 533, 576, 840, 903
BseJI	GATNNNNATC	1 cut(s)	852
BseLI	CCNNNNNNNGG	3 cut(s)	163, 581, 930
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	2 cut(s)	432, 767
BseXI	GCAGC	2 cut(s)	373, 1010
BseYI	CCCAGC	1 cut(s)	299
BshFI	GGCC	1 cut(s)	200
BsiHKAI	GWGCWC	2 cut(s)	331, 508
BslI	CCNNNNNNNGG	3 cut(s)	163, 581, 930
BsmAI	GTCTC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	452
BsnI	GGCC	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	331, 508
Bsp143I	GATC	8 cut(s)	238, 250, 354, 642, 726, 745, 808, 1006
Bsp19I	CCATGG	1 cut(s)	903
BspACI	CCGC	3 cut(s)	83, 410, 640
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	2 cut(s)	433, 766
BspLI	GGNNCC	2 cut(s)	88, 747
BspMI	ACCTGC	1 cut(s)	122
BspPI	GGATC	5 cut(s)	650, 721, 740, 753, 803
BspQI	GCTCTTC	1 cut(s)	357
BsrDI	GCAATG	1 cut(s)	231
BssECI	CCNNGG	5 cut(s)	181, 533, 576, 840, 903
BssMI	GATC	8 cut(s)	238, 250, 354, 642, 726, 745, 808, 1006
BssT1I	CCWWGG	3 cut(s)	533, 576, 903
Bst2UI	CCWGG	1 cut(s)	842
Bst4CI	ACNGT	4 cut(s)	333, 488, 516, 666
Bst6I	CTCTTC	1 cut(s)	357
BstAPI	GCANNNNNTGC	1 cut(s)	226
BstC8I	GCNNGC	2 cut(s)	198, 222
BstDEI	CTNAG	3 cut(s)	19, 441, 753
BstDSI	CCRYGG	2 cut(s)	181, 903
BstEII	GGTNACC	1 cut(s)	898
BstKTI	GATC	8 cut(s)	241, 253, 357, 645, 729, 748, 811, 1009
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	8 cut(s)	238, 250, 354, 642, 726, 745, 808, 1006
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 226, 386
BstNI	CCWGG	1 cut(s)	842
BstNSI	RCATGY	2 cut(s)	973, 1034
BstPI	GGTNACC	1 cut(s)	898
BstSCI	CCNGG	1 cut(s)	840
BstV1I	GCAGC	2 cut(s)	373, 1010
BstV2I	GAAGAC	2 cut(s)	149, 489
BstX2I	RGATCY	4 cut(s)	642, 726, 745, 1006
BstXI	CCANNNNNNTGG	1 cut(s)	756
BstYI	RGATCY	4 cut(s)	642, 726, 745, 1006
BsuI	GTATCC	1 cut(s)	753
BsuRI	GGCC	1 cut(s)	200
BtgI	CCRYGG	2 cut(s)	181, 903
BtsIMutI	CAGTG	2 cut(s)	102, 761
BveI	ACCTGC	1 cut(s)	122
Cac8I	GCNNGC	2 cut(s)	198, 222
CaiI	CAGNNNCTG	1 cut(s)	163
Cfr13I	GGNCC	2 cut(s)	214, 921
Csp6I	GTAC	2 cut(s)	617, 787
CspCI	CAANNNNNGTGG	2 cut(s)	163, 198
CviAII	CATG	5 cut(s)	650, 904, 947, 970, 1031
CviQI	GTAC	2 cut(s)	617, 787
DdeI	CTNAG	3 cut(s)	19, 441, 753
DpnI	GATC	8 cut(s)	240, 252, 356, 644, 728, 747, 810, 1008
DpnII	GATC	8 cut(s)	238, 250, 354, 642, 726, 745, 808, 1006
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco130I	CCWWGG	3 cut(s)	533, 576, 903
Eco47I	GGWCC	2 cut(s)	214, 921
Eco57I	CTGAAG	2 cut(s)	402, 1023
Eco91I	GGTNACC	1 cut(s)	898
EcoO65I	GGTNACC	1 cut(s)	898
EcoRII	CCWGG	1 cut(s)	840
EcoT14I	CCWWGG	3 cut(s)	533, 576, 903
ErhI	CCWWGG	3 cut(s)	533, 576, 903
FaeI	CATG	5 cut(s)	653, 907, 950, 973, 1034
FatI	CATG	5 cut(s)	649, 903, 946, 969, 1030
FauI	CCCGC	1 cut(s)	76
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	2 cut(s)	387, 999
Fsp4HI	GCNGC	2 cut(s)	387, 999
FspBI	CTAG	1 cut(s)	1045
GluI	GCNGC	2 cut(s)	387, 999
GsaI	CCCAGC	1 cut(s)	303
GsuI	CTGGAG	1 cut(s)	863
HaeIII	GGCC	1 cut(s)	200
Hin1II	CATG	5 cut(s)	653, 907, 950, 973, 1034
HinfI	GANTC	4 cut(s)	66, 160, 853, 865
HphI	GGTGA	4 cut(s)	86, 596, 792, 1001
Hpy188I	TCNGA	2 cut(s)	243, 862
Hpy188III	TCNNGA	5 cut(s)	113, 254, 461, 491, 931
HpyAV	CCTTC	4 cut(s)	88, 575, 741, 836
HpyCH4III	ACNGT	4 cut(s)	333, 488, 516, 666
HpyCH4V	TGCA	6 cut(s)	209, 229, 350, 400, 452, 817
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 226, 386
HpyF3I	CTNAG	3 cut(s)	19, 441, 753
Hsp92II	CATG	5 cut(s)	653, 907, 950, 973, 1034
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	8 cut(s)	238, 250, 354, 642, 726, 745, 808, 1006
LguI	GCTCTTC	1 cut(s)	357
LmnI	GCTCC	1 cut(s)	610
Lsp1109I	GCAGC	2 cut(s)	373, 1010
LweI	GCATC	2 cut(s)	13, 387
MaeI	CTAG	1 cut(s)	1045
MaeIII	GTNAC	7 cut(s)	14, 100, 202, 798, 879, 898, 989
MalI	GATC	8 cut(s)	240, 252, 356, 644, 728, 747, 810, 1008
MboI	GATC	8 cut(s)	238, 250, 354, 642, 726, 745, 808, 1006
MboII	GAAGA	9 cut(s)	154, 316, 374, 457, 494, 535, 611, 976, 1016
MflI	RGATCY	4 cut(s)	642, 726, 745, 1006
MhlI	GDGCHC	2 cut(s)	331, 508
MluCI	AATT	6 cut(s)	38, 318, 653, 832, 871, 1023
MlyI	GAGTC	1 cut(s)	60
MnlI	CCTC	8 cut(s)	158, 513, 736, 765, 838, 901, 971, 1011
MroXI	GAANNNNTTC	2 cut(s)	468, 938
MseI	TTAA	5 cut(s)	276, 335, 656, 738, 831
MslI	CAYNNNNRTG	1 cut(s)	681
MspA1I	CMGCKG	1 cut(s)	1001
MspR9I	CCNGG	1 cut(s)	842
Mva1269I	GAATGC	1 cut(s)	452
MvaI	CCWGG	1 cut(s)	842
MwoI	GCNNNNNNNGC	3 cut(s)	206, 226, 386
NcoI	CCATGG	1 cut(s)	903
NdeII	GATC	8 cut(s)	238, 250, 354, 642, 726, 745, 808, 1006
NlaIII	CATG	5 cut(s)	653, 907, 950, 973, 1034
NlaIV	GGNNCC	2 cut(s)	88, 747
NmuCI	GTSAC	4 cut(s)	14, 100, 798, 989
NspI	RCATGY	2 cut(s)	973, 1034
PaqCI	CACCTGC	1 cut(s)	122
PciI	ACATGT	1 cut(s)	1030
PciSI	GCTCTTC	1 cut(s)	357
PctI	GAATGC	1 cut(s)	452
PdmI	GAANNNNTTC	2 cut(s)	468, 938
PfeI	GAWTC	3 cut(s)	160, 853, 865
PflMI	CCANNNNNTGG	2 cut(s)	163, 930
PkrI	GCNGC	2 cut(s)	388, 1000
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
PscI	ACATGT	1 cut(s)	1030
PshBI	ATTAAT	1 cut(s)	656
Psp6I	CCWGG	1 cut(s)	840
PspEI	GGTNACC	1 cut(s)	898
PspFI	CCCAGC	1 cut(s)	299
PspGI	CCWGG	1 cut(s)	840
PspN4I	GGNNCC	2 cut(s)	88, 747
PspPI	GGNCC	2 cut(s)	214, 921
PstNI	CAGNNNCTG	1 cut(s)	163
PsuI	RGATCY	4 cut(s)	642, 726, 745, 1006
PvuII	CAGCTG	1 cut(s)	1001
RsaI	GTAC	2 cut(s)	618, 788
RsaNI	GTAC	2 cut(s)	617, 787
RseI	CAYNNNNRTG	1 cut(s)	681
SapI	GCTCTTC	1 cut(s)	357
SaqAI	TTAA	5 cut(s)	276, 335, 656, 738, 831
SatI	GCNGC	2 cut(s)	387, 999
Sau3AI	GATC	8 cut(s)	238, 250, 354, 642, 726, 745, 808, 1006
Sau96I	GGNCC	2 cut(s)	214, 921
SchI	GAGTC	1 cut(s)	60
ScrFI	CCNGG	1 cut(s)	842
SduI	GDGCHC	2 cut(s)	331, 508
SfaNI	GCATC	2 cut(s)	13, 387
SinI	GGWCC	2 cut(s)	214, 921
SmiMI	CAYNNNNRTG	1 cut(s)	681
SmlI	CTYRAG	3 cut(s)	113, 191, 692
SmoI	CTYRAG	3 cut(s)	113, 191, 692
Sse9I	AATT	6 cut(s)	38, 318, 653, 832, 871, 1023
SsiI	CCGC	3 cut(s)	83, 410, 640
SspMI	CTAG	1 cut(s)	1045
StyD4I	CCNGG	1 cut(s)	840
StyI	CCWWGG	3 cut(s)	533, 576, 903
TaaI	ACNGT	4 cut(s)	333, 488, 516, 666
TaqI	TCGA	1 cut(s)	518
TasI	AATT	6 cut(s)	38, 318, 653, 832, 871, 1023
TfiI	GAWTC	3 cut(s)	160, 853, 865
Tru1I	TTAA	5 cut(s)	276, 335, 656, 738, 831
Tru9I	TTAA	5 cut(s)	276, 335, 656, 738, 831
TscAI	CASTG	2 cut(s)	109, 761
TseFI	GTSAC	4 cut(s)	14, 100, 798, 989
TseI	GCWGC	2 cut(s)	386, 998
Tsp45I	GTSAC	4 cut(s)	14, 100, 798, 989
TspDTI	ATGAA	2 cut(s)	445, 666
TspRI	CASTG	2 cut(s)	109, 761
Van91I	CCANNNNNTGG	2 cut(s)	163, 930
VpaK11BI	GGWCC	2 cut(s)	214, 921
VspI	ATTAAT	1 cut(s)	656
XapI	RAATTY	1 cut(s)	871
XceI	RCATGY	2 cut(s)	973, 1034
XmnI	GAANNNNTTC	2 cut(s)	468, 938
XspI	CTAG	1 cut(s)	1045

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.