MD07G1091700.v1.1

26S proteasome non-ATPase regulatory subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
9662953 .. 9668690
5738 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1091700.v1.1.491

Sequence Viewer

Length: 1329 bp
ATGGAAGGAGGAGGTGATTTGGATAACCAAATTGAGAAGTTGCTGAATGTAGAGAAGCAGATGAGGCTCGCTGGTGATGTAGCAGGAACCAAGAAGGCCGCCATTGACATTCTTGATCTCTGCTTTAAAGCGGGTGCGTGGAAAACTCTCAATGATCAGATTGTTGTATTATCCAAACGTCGTGGTCAGCTCAAGCAGGCTGTAACTGCAATGGTCCAACAAGCGATGCAATACATTGATCAGACACCTGATATTGAAACTCGTGTAGAGCTTATTAAAACACTGAATAATGTTTCTGCTGGGAAGATATATGTTGAAATTGAGAGAGCTCGGTTAATCAAGAGACTTGCAAAGATTAAGGAAGAGCAAGGGCTTATTGCTGAAGCTGCTGATTTGATGCAAGAAATTGCGGTGGAAACTTTTGGTGCCATGGCAAAAACTGAGAAGATTGCTTTCATTCTTGAACAAGTTCGGTTGTGCTTAGATCGTCAAGATTATGTTCGCGCTCAAATACTCTCAAGGAAGATTAGTCCAAGGGTTTTTGACGTTGATGCTTCAAAAGAAAAGAAAAAACCTAAAGAAGGTGACAATGTTGTTGAAGAAGCTCCTGCTGATATACCATCGCTCTTGGAGTTGAAGCGGATCTACTATGAATTAATGATACGGTATTATTTTCACAACAACGATTACCTTGAGATTTGCCGTTGCTACAAGGCGATATATGATATTCCTTCTGTTAAGGAGAATCCAGCCCAGTGGATACCGGTCTTGAGGAAAATCTGTTGGTACTTGGTTCTGGCTCCATACGATTCAATGCAGTCAAGCCTTCTCAATTCCATCCTGGAGGATAAGAATCTTTCTGAACTTACATATTTTCGGTTGCTGTTGAAACAGGTGGTAACTATGGAGGTCATACAATGGACCACTCTTTGGAATACATACAAGGATGAGTTTGAGAGTGAGAAGAATATGCTTGGAGGCTCTTTGGGTGACAAAGCAGCTGAAGATCTGAGACAGAGGATTATTGAACATAACATACTTGTTGTTTCAAAGAACTACTCGAGAATTACCTTGAAAAGACTTGCAGAGCTGCTGTGCCTGAGTATCCAGGAAGCTGAGAAGCATCTGTCGGATATGGTTGTGTCCAAGGCAATAGTGGCCAAGATTGAGAGGCCAGTAGGAATAGTCTGTTTCCAAACTGCAAAGGATAGCAACAATGTTCTGAATTCGTGGGCTATGAACTTGGAGAAACTGCTTGATCTTGTTGAGAAGAGCTGCCACCAAATACACAAAGAAACCATGGTACACAAGGCTTCTCTGAAGGTTTGA

Protein Analysis

443

Amino Acids

50.61

Weight (kDa)

7.52

Isoelectric Point (pI)

40.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSMD12-CSN4_N PF22241 11 - 188 7.3e-68 PSMD12/CSN4, N-terminal
PSMD12-CSN4_N PF22241 211 - 248 1.6e-08 PSMD12/CSN4, N-terminal
PCI PF01399 333 - 399 7.5e-17 PCI domain
RPN5_C PF18098 405 - 437 4.6e-10 26S proteasome regulatory subunit RPN5 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 425
AccB7I CCANNNNNTGG 1 cut(s) 930
AccII CGCG 1 cut(s) 504
AciI CCGC 4 cut(s) 99, 131, 410, 640
AclWI GGATC 1 cut(s) 650
AcoI YGGCCR 1 cut(s) 1158
AcsI RAATTY 1 cut(s) 1225
AcuI CTGAAG 2 cut(s) 402, 1023
AfaI GTAC 2 cut(s) 788, 1305
AfiI CCNNNNNNNGG 2 cut(s) 581, 930
AgeI ACCGGT 1 cut(s) 763
AjnI CCWGG 2 cut(s) 840, 1107
AluBI AGCT 9 cut(s) 190, 271, 329, 386, 605, 1001, 1090, 1115, 1275
AluI AGCT 9 cut(s) 190, 271, 329, 386, 605, 1001, 1090, 1115, 1275
Alw21I GWGCWC 1 cut(s) 331
Alw26I GTCTC 2 cut(s) 337, 1006
AlwI GGATC 1 cut(s) 650
Ama87I CYCGRG 1 cut(s) 1060
AoxI GGCC 3 cut(s) 96, 1158, 1172
ApeKI GCWGC 4 cut(s) 386, 998, 1090, 1275
ApoI RAATTY 1 cut(s) 1225
AseI ATTAAT 1 cut(s) 656
AsiGI ACCGGT 1 cut(s) 763
Asp700I GAANNNNTTC 1 cut(s) 468
AspLEI GCGC 1 cut(s) 506
AspS9I GGNCC 2 cut(s) 214, 921
AsuHPI GGTGA 4 cut(s) 26, 86, 596, 1001
AvaI CYCGRG 1 cut(s) 1060
AvaII GGWCC 2 cut(s) 214, 921
BalI TGGCCA 1 cut(s) 1160
BanI GGYRCC 1 cut(s) 425
BanII GRGCYC 1 cut(s) 331
BarI GAAGNNNNNNTAC 2 cut(s) 629, 661
BauI CACGAG 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 331
BbvI GCAGC 4 cut(s) 373, 1010, 1077, 1262
BccI CCATC 2 cut(s) 628, 845
BceAI ACGGC 1 cut(s) 687
BciT130I CCWGG 2 cut(s) 842, 1109
BciVI GTATCC 2 cut(s) 753, 1115
BclI TGATCA 2 cut(s) 154, 238
BcoDI GTCTC 2 cut(s) 337, 1006
BfuI GTATCC 2 cut(s) 753, 1115
BglII AGATCT 1 cut(s) 1006
BisI GCNGC 5 cut(s) 99, 387, 999, 1091, 1276
BlsI GCNGC 5 cut(s) 100, 388, 1000, 1092, 1277
Bme1390I CCNGG 2 cut(s) 842, 1109
Bme18I GGWCC 2 cut(s) 214, 921
BmeT110I CYCGRG 1 cut(s) 1060
BmgT120I GGNCC 2 cut(s) 214, 921
BmiI GGNNCC 3 cut(s) 88, 427, 801
BmrFI CCNGG 2 cut(s) 842, 1109
BmrI ACTGGG 1 cut(s) 748
BmsI GCATC 4 cut(s) 216, 387, 541, 1132
BmuI ACTGGG 1 cut(s) 748
BpmI CTGGAG 1 cut(s) 863
BpuEI CTTGAG 4 cut(s) 176, 502, 713, 790
BsaBI GATNNNNATC 1 cut(s) 852
BsaJI CCNNGG 4 cut(s) 429, 533, 1146, 1299
BsaWI WCCGGW 1 cut(s) 763
Bsc4I CCNNNNNNNGG 2 cut(s) 581, 930
Bse118I RCCGGY 1 cut(s) 763
Bse1I ACTGG 2 cut(s) 754, 1175
Bse3DI GCAATG 1 cut(s) 216
Bse8I GATNNNNATC 1 cut(s) 852
BseBI CCWGG 2 cut(s) 842, 1109
BseDI CCNNGG 4 cut(s) 429, 533, 1146, 1299
BseGI GGATG 2 cut(s) 837, 952
BseJI GATNNNNATC 1 cut(s) 852
BseLI CCNNNNNNNGG 2 cut(s) 581, 930
BseMI GCAATG 1 cut(s) 216
BseMII CTCAG 4 cut(s) 432, 1001, 1091, 1107
BseNI ACTGG 2 cut(s) 754, 1175
BseRI GAGGAG 1 cut(s) 24
BseXI GCAGC 4 cut(s) 373, 1010, 1077, 1262
BseYI CCCAGC 1 cut(s) 299
Bsh1236I CGCG 1 cut(s) 504
BshFI GGCC 3 cut(s) 98, 1160, 1174
BshNI GGYRCC 1 cut(s) 425
BshTI ACCGGT 1 cut(s) 763
BsiHKAI GWGCWC 1 cut(s) 331
BsiHKCI CYCGRG 1 cut(s) 1060
BsiSI CCGG 1 cut(s) 764
BslI CCNNNNNNNGG 2 cut(s) 581, 930
BsmAI GTCTC 2 cut(s) 337, 1006
BsnI GGCC 3 cut(s) 98, 1160, 1174
BsoBI CYCGRG 1 cut(s) 1060
Bsp1286I GDGCHC 1 cut(s) 331
Bsp143I GATC 7 cut(s) 115, 154, 238, 484, 642, 1006, 1258
Bsp19I CCATGG 2 cut(s) 429, 1299
BspACI CCGC 4 cut(s) 99, 131, 410, 640
BspANI GGCC 3 cut(s) 98, 1160, 1174
BspCNI CTCAG 4 cut(s) 433, 1002, 1092, 1108
BspFNI CGCG 1 cut(s) 504
BspLI GGNNCC 3 cut(s) 88, 427, 801
BspPI GGATC 1 cut(s) 650
BspQI GCTCTTC 2 cut(s) 357, 1265
BspT107I GGYRCC 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 216
BsrFI RCCGGY 1 cut(s) 763
BsrI ACTGG 2 cut(s) 754, 1175
BssAI RCCGGY 1 cut(s) 763
BssECI CCNNGG 4 cut(s) 429, 533, 1146, 1299
BssMI GATC 7 cut(s) 115, 154, 238, 484, 642, 1006, 1258
BssSI CACGAG 1 cut(s) 261
BssT1I CCWWGG 4 cut(s) 429, 533, 1146, 1299
Bst2BI CACGAG 1 cut(s) 261
Bst2UI CCWGG 2 cut(s) 842, 1109
Bst4CI ACNGT 1 cut(s) 666
Bst6I CTCTTC 2 cut(s) 357, 1265
BstC8I GCNNGC 2 cut(s) 69, 198
BstDEI CTNAG 5 cut(s) 441, 481, 1010, 1100, 1116
BstDSI CCRYGG 2 cut(s) 429, 1299
BstENI CCTNNNNNAGG 1 cut(s) 579
BstF5I GGATG 2 cut(s) 837, 952
BstFNI CGCG 1 cut(s) 504
BstHHI GCGC 1 cut(s) 506
BstKTI GATC 7 cut(s) 118, 157, 241, 487, 645, 1009, 1261
BstMAI GTCTC 2 cut(s) 337, 1006
BstMBI GATC 7 cut(s) 115, 154, 238, 484, 642, 1006, 1258
BstMWI GCNNNNNNNGC 4 cut(s) 64, 206, 386, 1157
BstNI CCWGG 2 cut(s) 842, 1109
BstSCI CCNGG 2 cut(s) 840, 1107
BstUI CGCG 1 cut(s) 504
BstV1I GCAGC 4 cut(s) 373, 1010, 1077, 1262
BstX2I RGATCY 2 cut(s) 642, 1006
BstXI CCANNNNNNTGG 1 cut(s) 756
BstYI RGATCY 2 cut(s) 642, 1006
BsuI GTATCC 2 cut(s) 753, 1115
BsuRI GGCC 3 cut(s) 98, 1160, 1174
BtgI CCRYGG 2 cut(s) 429, 1299
BtgZI GCGATG 2 cut(s) 239, 606
BtsCI GGATG 2 cut(s) 837, 952
BtsIMutI CAGTG 2 cut(s) 281, 761
Cac8I GCNNGC 2 cut(s) 69, 198
CfoI GCGC 1 cut(s) 506
Cfr10I RCCGGY 1 cut(s) 763
Cfr13I GGNCC 2 cut(s) 214, 921
Csp6I GTAC 2 cut(s) 787, 1304
CspAI ACCGGT 1 cut(s) 763
CspCI CAANNNNNGTGG 2 cut(s) 163, 198
CviAII CATG 2 cut(s) 430, 1300
CviQI GTAC 2 cut(s) 787, 1304
DdeI CTNAG 5 cut(s) 441, 481, 1010, 1100, 1116
DpnI GATC 7 cut(s) 117, 156, 240, 486, 644, 1008, 1260
DpnII GATC 7 cut(s) 115, 154, 238, 484, 642, 1006, 1258
DraI TTTAAA 1 cut(s) 127
EaeI YGGCCR 1 cut(s) 1158
Eam1104I CTCTTC 2 cut(s) 357, 1265
EarI CTCTTC 2 cut(s) 357, 1265
Ecl136II GAGCTC 1 cut(s) 329
Eco130I CCWWGG 4 cut(s) 429, 533, 1146, 1299
Eco24I GRGCYC 1 cut(s) 331
Eco47I GGWCC 2 cut(s) 214, 921
Eco53kI GAGCTC 1 cut(s) 329
Eco57I CTGAAG 2 cut(s) 402, 1023
Eco88I CYCGRG 1 cut(s) 1060
EcoICRI GAGCTC 1 cut(s) 329
EcoNI CCTNNNNNAGG 1 cut(s) 579
EcoRI GAATTC 1 cut(s) 1225
EcoRII CCWGG 2 cut(s) 840, 1107
EcoT14I CCWWGG 4 cut(s) 429, 533, 1146, 1299
EcoT38I GRGCYC 1 cut(s) 331
ErhI CCWWGG 4 cut(s) 429, 533, 1146, 1299
FaeI CATG 2 cut(s) 433, 1303
FatI CATG 2 cut(s) 429, 1299
FauI CCCGC 1 cut(s) 124
FbaI TGATCA 2 cut(s) 154, 238
Fnu4HI GCNGC 5 cut(s) 99, 387, 999, 1091, 1276
FokI GGATG 2 cut(s) 824, 959
FriOI GRGCYC 1 cut(s) 331
Fsp4HI GCNGC 5 cut(s) 99, 387, 999, 1091, 1276
GlaI GCGC 1 cut(s) 505
GluI GCNGC 5 cut(s) 99, 387, 999, 1091, 1276
GsaI CCCAGC 1 cut(s) 303
GsuI CTGGAG 1 cut(s) 863
HaeIII GGCC 3 cut(s) 98, 1160, 1174
HapII CCGG 1 cut(s) 764
HhaI GCGC 1 cut(s) 506
Hin1II CATG 2 cut(s) 433, 1303
Hin6I GCGC 1 cut(s) 504
HinP1I GCGC 1 cut(s) 504
HinfI GANTC 3 cut(s) 745, 809, 853
HpaII CCGG 1 cut(s) 764
HphI GGTGA 4 cut(s) 26, 86, 596, 1001
Hpy166II GTNNAC 1 cut(s) 1306
Hpy188I TCNGA 7 cut(s) 159, 243, 862, 1011, 1132, 1224, 1320
Hpy188III TCNNGA 6 cut(s) 113, 340, 461, 491, 769, 1062
Hpy8I GTNNAC 1 cut(s) 1306
Hpy99I CGWCG 1 cut(s) 183
HpyAV CCTTC 5 cut(s) 88, 575, 741, 836, 1315
HpyCH4III ACNGT 1 cut(s) 666
HpyCH4IV ACGT 2 cut(s) 178, 546
HpyCH4V TGCA 7 cut(s) 209, 229, 350, 400, 817, 1085, 1202
HpyF10VI GCNNNNNNNGC 4 cut(s) 64, 206, 386, 1157
HpyF3I CTNAG 5 cut(s) 441, 481, 1010, 1100, 1116
HpySE526I ACGT 2 cut(s) 178, 546
Hsp92II CATG 2 cut(s) 433, 1303
HspAI GCGC 1 cut(s) 504
Ksp22I TGATCA 2 cut(s) 154, 238
Kzo9I GATC 7 cut(s) 115, 154, 238, 484, 642, 1006, 1258
LguI GCTCTTC 2 cut(s) 357, 1265
LmnI GCTCC 2 cut(s) 610, 805
Lsp1109I GCAGC 4 cut(s) 373, 1010, 1077, 1262
LweI GCATC 4 cut(s) 216, 387, 541, 1132
MaeII ACGT 2 cut(s) 178, 546
MaeIII GTNAC 4 cut(s) 202, 584, 898, 989
MalI GATC 7 cut(s) 117, 156, 240, 486, 644, 1008, 1260
MboI GATC 7 cut(s) 115, 154, 238, 484, 642, 1006, 1258
MboII GAAGA 8 cut(s) 316, 374, 457, 535, 611, 976, 1016, 1282
MflI RGATCY 2 cut(s) 642, 1006
MhlI GDGCHC 1 cut(s) 331
MlsI TGGCCA 1 cut(s) 1160
MluCI AATT 7 cut(s) 30, 318, 405, 653, 832, 1065, 1225
MluNI TGGCCA 1 cut(s) 1160
MmeI TCCRAC 2 cut(s) 241, 1110
MnlI CCTC 8 cut(s) 5, 57, 765, 838, 901, 971, 1011, 1164
Mox20I TGGCCA 1 cut(s) 1160
MroXI GAANNNNTTC 1 cut(s) 468
MscI TGGCCA 1 cut(s) 1160
MseI TTAA 6 cut(s) 126, 276, 335, 357, 656, 738
Msp20I TGGCCA 1 cut(s) 1160
MspA1I CMGCKG 1 cut(s) 1001
MspI CCGG 1 cut(s) 764
MspR9I CCNGG 2 cut(s) 842, 1109
MvaI CCWGG 2 cut(s) 842, 1109
MvnI CGCG 1 cut(s) 504
MwoI GCNNNNNNNGC 4 cut(s) 64, 206, 386, 1157
NcoI CCATGG 2 cut(s) 429, 1299
NdeII GATC 7 cut(s) 115, 154, 238, 484, 642, 1006, 1258
NlaIII CATG 2 cut(s) 433, 1303
NlaIV GGNNCC 3 cut(s) 88, 427, 801
NmuCI GTSAC 2 cut(s) 584, 989
PaeR7I CTCGAG 1 cut(s) 1060
PciSI GCTCTTC 2 cut(s) 357, 1265
PdmI GAANNNNTTC 1 cut(s) 468
PfeI GAWTC 3 cut(s) 745, 809, 853
PflMI CCANNNNNTGG 1 cut(s) 930
PfoI TCCNGGA 2 cut(s) 840, 1107
PinAI ACCGGT 1 cut(s) 763
PkrI GCNGC 5 cut(s) 100, 388, 1000, 1092, 1277
PshBI ATTAAT 1 cut(s) 656
Psp124BI GAGCTC 1 cut(s) 331
Psp6I CCWGG 2 cut(s) 840, 1107
PspFI CCCAGC 1 cut(s) 299
PspGI CCWGG 2 cut(s) 840, 1107
PspN4I GGNNCC 3 cut(s) 88, 427, 801
PspPI GGNCC 2 cut(s) 214, 921
PsrI GAACNNNNNNTAC 2 cut(s) 1020, 1052
PsuI RGATCY 2 cut(s) 642, 1006
PvuII CAGCTG 1 cut(s) 1001
RsaI GTAC 2 cut(s) 788, 1305
RsaNI GTAC 2 cut(s) 787, 1304
SacI GAGCTC 1 cut(s) 331
SapI GCTCTTC 2 cut(s) 357, 1265
SaqAI TTAA 6 cut(s) 126, 276, 335, 357, 656, 738
SatI GCNGC 5 cut(s) 99, 387, 999, 1091, 1276
Sau3AI GATC 7 cut(s) 115, 154, 238, 484, 642, 1006, 1258
Sau96I GGNCC 2 cut(s) 214, 921
ScrFI CCNGG 2 cut(s) 842, 1109
SduI GDGCHC 1 cut(s) 331
SfaNI GCATC 4 cut(s) 216, 387, 541, 1132
Sfr274I CTCGAG 1 cut(s) 1060
SinI GGWCC 2 cut(s) 214, 921
SlaI CTCGAG 1 cut(s) 1060
SmlI CTYRAG 5 cut(s) 191, 517, 692, 769, 1060
SmoI CTYRAG 5 cut(s) 191, 517, 692, 769, 1060
Sse9I AATT 7 cut(s) 30, 318, 405, 653, 832, 1065, 1225
SsiI CCGC 4 cut(s) 99, 131, 410, 640
SstI GAGCTC 1 cut(s) 331
StyD4I CCNGG 2 cut(s) 840, 1107
StyI CCWWGG 4 cut(s) 429, 533, 1146, 1299
TaaI ACNGT 1 cut(s) 666
TaiI ACGT 2 cut(s) 181, 549
TaqI TCGA 1 cut(s) 1061
TasI AATT 7 cut(s) 30, 318, 405, 653, 832, 1065, 1225
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 3 cut(s) 745, 809, 853
Tru1I TTAA 6 cut(s) 126, 276, 335, 357, 656, 738
Tru9I TTAA 6 cut(s) 126, 276, 335, 357, 656, 738
TscAI CASTG 2 cut(s) 288, 761
TseFI GTSAC 2 cut(s) 584, 989
TseI GCWGC 4 cut(s) 386, 998, 1090, 1275
Tsp45I GTSAC 2 cut(s) 584, 989
TspDTI ATGAA 3 cut(s) 445, 666, 1253
TspRI CASTG 2 cut(s) 288, 761
Van91I CCANNNNNTGG 1 cut(s) 930
VpaK11BI GGWCC 2 cut(s) 214, 921
VspI ATTAAT 1 cut(s) 656
XagI CCTNNNNNAGG 1 cut(s) 579
XapI RAATTY 1 cut(s) 1225
XcmI CCANNNNNNNNNTGG 1 cut(s) 1153
XhoI CTCGAG 1 cut(s) 1060
XmnI GAANNNNTTC 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.