MD02G1223100.v1.1

26S proteasome non-ATPase regulatory subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
26026145 .. 26033280
7136 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1223100.v1.1.491

Sequence Viewer

Length: 1329 bp
ATGGGAGGAGGAGGCGATTTGGATACCCAAATAGAGAAGTTGCTGAATGTAGAGAAGCAAATGAGGCTTGCTGGTGATGTAGCGGGAACCAAGAAGGCAGCCACTGACATTCTTGAACTCTGCTTTAAAGCGGGTGCTTGGAAGACTCTCAATGATCAGATTGTTGTATTATCCAAACGTCGTGGTCAGCTCAAGCAGGCTGTGACTGCAATGGTCCAGCAAGCGATGCAATATATTGATCAGACACCAGATATTGAAACTCGTGTAGAGCTTATTAAAACACTGAATAATGTTTCTGCTGGGAAGATATATGTTGAAATTGAGAGAGCCCGGTTAATCAAGAGACTTGCAAAGATTAAGGAAGAGCAAGGGCTTATTGCTGAAGCTGCTGATTTGATGCAAGAAATTGCGGTGGAAACTTTTGGTGCCATGGCAAAAACTGAGAAGATTGCTTTCATTCTTGAACAAGTTCGGTTGTGTTTAGACCGTCAAGATTATGTTCGTGCTCAAATACTCTCGAGGAAGATCAGTCCAAGAGTTTTTGATATTGATGCTTCAAAAGAAAAGAAAAAACCAAAAGAAGGTGACAATGTTGTTGAAGAAGCTCCTGCTGATATACCATCGCTCTTGGAGTTGAAGCGGATATACTATGAATTAATGATACGGTATTATTCTCACAACAACGATTACCTTGAGATTTGCCGTTGCTACAAGGCGATATACGATATTCCTTCTGTTAAGGAGAATTCAGCTCAGTGGATACCGGTCTTGAGGAAAATCTGTTGGTACTTGGTTCTGGCTCCATATGATCCAATGCAGTCAAGCCTTCTCAATTCCATCCTGGAGGATAAGAATCTTTCTGAACTTCCATATTTTAGGTTGTTGTTGAAACAGGTGGTAACTATGGAAGTCATACAATGGAACACTCTTTGGAATACATACAAGGATGAGTTTGAGAGCGAGAAGAACATGCTTGGAGGCTCTTTGGGCGACAAAGCAGCTGAAGATCTGAGACAGAGAATTATTGAACATAACATACTTGTTGTTTCCAAGAACTACTCAAGAATTACCTTGAAGCGACTTGCAGAGCTGCTGTGTCTGAGTATACAGGAAGCTGAGAAGCATCTGTCTGATATGGTTGTGTCCAAGGCACTTGTGGCCAAGATTGACAGGCCAGTAGGAATAATCTGTTTCCAAACTGCAAAGGATAGCAACAACGTTCTGAATTCGTGGGCTATGAACTTGGAGAAACTGCTTGATCTTGTTGAGAAGAGCTGTCACCAAATACACAAAGAAACCATGGTACACAAGGCTTCTCTGAAGGTTTGA

Protein Analysis

443

Amino Acids

50.49

Weight (kDa)

7.96

Isoelectric Point (pI)

39.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSMD12-CSN4_N PF22241 11 - 188 1.5e-67 PSMD12/CSN4, N-terminal
PSMD12-CSN4_N PF22241 211 - 248 3.9e-09 PSMD12/CSN4, N-terminal
PCI PF01399 333 - 399 1.4e-17 PCI domain
RPN5_C PF18098 405 - 437 4.6e-10 26S proteasome regulatory subunit RPN5 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 425
AccI GTMKAC 1 cut(s) 1105
AciI CCGC 4 cut(s) 83, 131, 410, 640
AclI AACGTT 1 cut(s) 1218
AclWI GGATC 1 cut(s) 803
AcoI YGGCCR 1 cut(s) 1158
AcsI RAATTY 2 cut(s) 745, 1225
AcuI CTGAAG 2 cut(s) 402, 1023
AfaI GTAC 2 cut(s) 788, 1305
AfiI CCNNNNNNNGG 1 cut(s) 581
AgeI ACCGGT 1 cut(s) 763
AjnI CCWGG 1 cut(s) 840
AluBI AGCT 9 cut(s) 190, 271, 386, 605, 752, 1001, 1090, 1115, 1275
AluI AGCT 9 cut(s) 190, 271, 386, 605, 752, 1001, 1090, 1115, 1275
Alw21I GWGCWC 1 cut(s) 508
Alw26I GTCTC 2 cut(s) 337, 1006
AlwI GGATC 1 cut(s) 803
AlwNI CAGNNNCTG 1 cut(s) 104
Ama87I CYCGRG 1 cut(s) 517
AoxI GGCC 2 cut(s) 1158, 1172
ApeKI GCWGC 4 cut(s) 98, 386, 998, 1090
ApoI RAATTY 2 cut(s) 745, 1225
AseI ATTAAT 1 cut(s) 656
AsiGI ACCGGT 1 cut(s) 763
Asp700I GAANNNNTTC 1 cut(s) 468
AspS9I GGNCC 1 cut(s) 214
AsuC2I CCSGG 1 cut(s) 331
AsuHPI GGTGA 3 cut(s) 86, 596, 1271
AvaI CYCGRG 1 cut(s) 517
AvaII GGWCC 1 cut(s) 214
BalI TGGCCA 1 cut(s) 1160
BanI GGYRCC 1 cut(s) 425
BanII GRGCYC 1 cut(s) 331
BarI GAAGNNNNNNTAC 2 cut(s) 629, 661
BauI CACGAG 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 508
BbvI GCAGC 4 cut(s) 110, 373, 1010, 1077
BccI CCATC 2 cut(s) 628, 845
BceAI ACGGC 1 cut(s) 687
BciT130I CCWGG 1 cut(s) 842
BciVI GTATCC 2 cut(s) 16, 753
BclI TGATCA 2 cut(s) 154, 238
BcnI CCSGG 1 cut(s) 331
BcoDI GTCTC 2 cut(s) 337, 1006
BfuI GTATCC 2 cut(s) 16, 753
BglII AGATCT 1 cut(s) 1006
BisI GCNGC 4 cut(s) 99, 387, 999, 1091
BlsI GCNGC 4 cut(s) 100, 388, 1000, 1092
Bme1390I CCNGG 2 cut(s) 331, 842
Bme18I GGWCC 1 cut(s) 214
BmeT110I CYCGRG 1 cut(s) 517
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 3 cut(s) 88, 427, 801
BmrFI CCNGG 2 cut(s) 331, 842
BmsI GCATC 4 cut(s) 216, 387, 541, 1132
BpiI GAAGAC 1 cut(s) 149
BpmI CTGGAG 1 cut(s) 863
BpuEI CTTGAG 4 cut(s) 176, 713, 790, 1045
BpuMI CCSGG 1 cut(s) 331
BsaBI GATNNNNATC 1 cut(s) 852
BsaJI CCNNGG 3 cut(s) 429, 1146, 1299
BsaWI WCCGGW 1 cut(s) 763
Bsc4I CCNNNNNNNGG 1 cut(s) 581
Bse118I RCCGGY 1 cut(s) 763
Bse1I ACTGG 1 cut(s) 1175
Bse3DI GCAATG 1 cut(s) 216
Bse8I GATNNNNATC 1 cut(s) 852
BseBI CCWGG 1 cut(s) 842
BseDI CCNNGG 3 cut(s) 429, 1146, 1299
BseGI GGATG 2 cut(s) 837, 952
BseJI GATNNNNATC 1 cut(s) 852
BseLI CCNNNNNNNGG 1 cut(s) 581
BseMI GCAATG 1 cut(s) 216
BseMII CTCAG 5 cut(s) 432, 767, 1001, 1091, 1107
BseNI ACTGG 1 cut(s) 1175
BseRI GAGGAG 2 cut(s) 21, 24
BseXI GCAGC 4 cut(s) 110, 373, 1010, 1077
BseYI CCCAGC 1 cut(s) 299
BshFI GGCC 2 cut(s) 1160, 1174
BshNI GGYRCC 1 cut(s) 425
BshTI ACCGGT 1 cut(s) 763
BsiHKAI GWGCWC 1 cut(s) 508
BsiHKCI CYCGRG 1 cut(s) 517
BsiSI CCGG 2 cut(s) 331, 764
BslI CCNNNNNNNGG 1 cut(s) 581
BsmAI GTCTC 2 cut(s) 337, 1006
BsnI GGCC 2 cut(s) 1160, 1174
BsoBI CYCGRG 1 cut(s) 517
Bsp1286I GDGCHC 2 cut(s) 331, 508
Bsp143I GATC 6 cut(s) 154, 238, 525, 808, 1006, 1258
Bsp19I CCATGG 2 cut(s) 429, 1299
BspACI CCGC 4 cut(s) 83, 131, 410, 640
BspANI GGCC 2 cut(s) 1160, 1174
BspCNI CTCAG 5 cut(s) 433, 766, 1002, 1092, 1108
BspLI GGNNCC 3 cut(s) 88, 427, 801
BspPI GGATC 1 cut(s) 803
BspQI GCTCTTC 2 cut(s) 357, 1265
BspT107I GGYRCC 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 216
BsrFI RCCGGY 1 cut(s) 763
BsrI ACTGG 1 cut(s) 1175
BssAI RCCGGY 1 cut(s) 763
BssECI CCNNGG 3 cut(s) 429, 1146, 1299
BssMI GATC 6 cut(s) 154, 238, 525, 808, 1006, 1258
BssNAI GTATAC 1 cut(s) 1106
BssSI CACGAG 1 cut(s) 261
BssT1I CCWWGG 3 cut(s) 429, 1146, 1299
Bst1107I GTATAC 1 cut(s) 1106
Bst2BI CACGAG 1 cut(s) 261
Bst2UI CCWGG 1 cut(s) 842
Bst4CI ACNGT 2 cut(s) 488, 666
Bst6I CTCTTC 2 cut(s) 357, 1265
BstAPI GCANNNNNTGC 1 cut(s) 226
BstC8I GCNNGC 3 cut(s) 69, 198, 222
BstDEI CTNAG 5 cut(s) 441, 753, 1010, 1100, 1116
BstDSI CCRYGG 2 cut(s) 429, 1299
BstF5I GGATG 2 cut(s) 837, 952
BstKTI GATC 6 cut(s) 157, 241, 528, 811, 1009, 1261
BstMAI GTCTC 2 cut(s) 337, 1006
BstMBI GATC 6 cut(s) 154, 238, 525, 808, 1006, 1258
BstMWI GCNNNNNNNGC 6 cut(s) 64, 206, 226, 386, 987, 1157
BstNI CCWGG 1 cut(s) 842
BstNSI RCATGY 1 cut(s) 973
BstSCI CCNGG 2 cut(s) 329, 840
BstV1I GCAGC 4 cut(s) 110, 373, 1010, 1077
BstV2I GAAGAC 1 cut(s) 149
BstX2I RGATCY 1 cut(s) 1006
BstYI RGATCY 1 cut(s) 1006
BstZ17I GTATAC 1 cut(s) 1106
BsuI GTATCC 2 cut(s) 16, 753
BsuRI GGCC 2 cut(s) 1160, 1174
BtgI CCRYGG 2 cut(s) 429, 1299
BtgZI GCGATG 2 cut(s) 239, 606
BtsCI GGATG 2 cut(s) 837, 952
BtsIMutI CAGTG 3 cut(s) 102, 281, 761
Cac8I GCNNGC 3 cut(s) 69, 198, 222
CaiI CAGNNNCTG 1 cut(s) 104
Cfr10I RCCGGY 1 cut(s) 763
Cfr13I GGNCC 1 cut(s) 214
Csp6I GTAC 2 cut(s) 787, 1304
CspAI ACCGGT 1 cut(s) 763
CspCI CAANNNNNGTGG 2 cut(s) 163, 198
CviAII CATG 3 cut(s) 430, 970, 1300
CviQI GTAC 2 cut(s) 787, 1304
DdeI CTNAG 5 cut(s) 441, 753, 1010, 1100, 1116
DpnI GATC 6 cut(s) 156, 240, 527, 810, 1008, 1260
DpnII GATC 6 cut(s) 154, 238, 525, 808, 1006, 1258
DraI TTTAAA 1 cut(s) 127
EaeI YGGCCR 1 cut(s) 1158
Eam1104I CTCTTC 2 cut(s) 357, 1265
EarI CTCTTC 2 cut(s) 357, 1265
Eco130I CCWWGG 3 cut(s) 429, 1146, 1299
Eco24I GRGCYC 1 cut(s) 331
Eco47I GGWCC 1 cut(s) 214
Eco57I CTGAAG 2 cut(s) 402, 1023
Eco88I CYCGRG 1 cut(s) 517
EcoRI GAATTC 2 cut(s) 745, 1225
EcoRII CCWGG 1 cut(s) 840
EcoT14I CCWWGG 3 cut(s) 429, 1146, 1299
EcoT38I GRGCYC 1 cut(s) 331
ErhI CCWWGG 3 cut(s) 429, 1146, 1299
FaeI CATG 3 cut(s) 433, 973, 1303
FatI CATG 3 cut(s) 429, 969, 1299
FauI CCCGC 2 cut(s) 76, 124
FauNDI CATATG 1 cut(s) 805
FbaI TGATCA 2 cut(s) 154, 238
FblI GTMKAC 1 cut(s) 1105
Fnu4HI GCNGC 4 cut(s) 99, 387, 999, 1091
FokI GGATG 2 cut(s) 824, 959
FriOI GRGCYC 1 cut(s) 331
Fsp4HI GCNGC 4 cut(s) 99, 387, 999, 1091
GluI GCNGC 4 cut(s) 99, 387, 999, 1091
GsaI CCCAGC 1 cut(s) 303
GsuI CTGGAG 1 cut(s) 863
HaeIII GGCC 2 cut(s) 1160, 1174
HapII CCGG 2 cut(s) 331, 764
Hin1II CATG 3 cut(s) 433, 973, 1303
HinfI GANTC 2 cut(s) 145, 853
HpaII CCGG 2 cut(s) 331, 764
HphI GGTGA 3 cut(s) 86, 596, 1271
Hpy166II GTNNAC 2 cut(s) 1106, 1306
Hpy188I TCNGA 8 cut(s) 159, 243, 862, 1011, 1101, 1132, 1224, 1320
Hpy188III TCNNGA 7 cut(s) 113, 340, 461, 491, 517, 769, 1062
Hpy8I GTNNAC 2 cut(s) 1106, 1306
Hpy99I CGWCG 1 cut(s) 183
HpyAV CCTTC 5 cut(s) 88, 575, 741, 836, 1315
HpyCH4III ACNGT 2 cut(s) 488, 666
HpyCH4IV ACGT 2 cut(s) 178, 1218
HpyCH4V TGCA 7 cut(s) 209, 229, 350, 400, 817, 1085, 1202
HpyF10VI GCNNNNNNNGC 6 cut(s) 64, 206, 226, 386, 987, 1157
HpyF3I CTNAG 5 cut(s) 441, 753, 1010, 1100, 1116
HpySE526I ACGT 2 cut(s) 178, 1218
Hsp92II CATG 3 cut(s) 433, 973, 1303
Ksp22I TGATCA 2 cut(s) 154, 238
Kzo9I GATC 6 cut(s) 154, 238, 525, 808, 1006, 1258
LguI GCTCTTC 2 cut(s) 357, 1265
LmnI GCTCC 2 cut(s) 610, 805
Lsp1109I GCAGC 4 cut(s) 110, 373, 1010, 1077
LweI GCATC 4 cut(s) 216, 387, 541, 1132
MaeII ACGT 2 cut(s) 178, 1218
MaeIII GTNAC 4 cut(s) 202, 584, 898, 1277
MalI GATC 6 cut(s) 156, 240, 527, 810, 1008, 1260
MboI GATC 6 cut(s) 154, 238, 525, 808, 1006, 1258
MboII GAAGA 9 cut(s) 154, 316, 374, 457, 535, 611, 976, 1016, 1282
MflI RGATCY 1 cut(s) 1006
MhlI GDGCHC 2 cut(s) 331, 508
MlsI TGGCCA 1 cut(s) 1160
MluCI AATT 8 cut(s) 318, 405, 653, 745, 832, 1020, 1065, 1225
MluNI TGGCCA 1 cut(s) 1160
MlyI GAGTC 1 cut(s) 139
MnlI CCTC 6 cut(s) 5, 57, 513, 765, 838, 971
Mox20I TGGCCA 1 cut(s) 1160
MroXI GAANNNNTTC 1 cut(s) 468
MscI TGGCCA 1 cut(s) 1160
MseI TTAA 6 cut(s) 126, 276, 335, 357, 656, 738
Msp20I TGGCCA 1 cut(s) 1160
MspA1I CMGCKG 1 cut(s) 1001
MspI CCGG 2 cut(s) 331, 764
MspR9I CCNGG 2 cut(s) 331, 842
MvaI CCWGG 1 cut(s) 842
MwoI GCNNNNNNNGC 6 cut(s) 64, 206, 226, 386, 987, 1157
NciI CCSGG 1 cut(s) 331
NcoI CCATGG 2 cut(s) 429, 1299
NdeI CATATG 1 cut(s) 805
NdeII GATC 6 cut(s) 154, 238, 525, 808, 1006, 1258
NlaIII CATG 3 cut(s) 433, 973, 1303
NlaIV GGNNCC 3 cut(s) 88, 427, 801
NmuCI GTSAC 3 cut(s) 202, 584, 1277
NspI RCATGY 1 cut(s) 973
PaeR7I CTCGAG 1 cut(s) 517
PciSI GCTCTTC 2 cut(s) 357, 1265
PdmI GAANNNNTTC 1 cut(s) 468
PfeI GAWTC 1 cut(s) 853
PfoI TCCNGGA 1 cut(s) 840
PinAI ACCGGT 1 cut(s) 763
PkrI GCNGC 4 cut(s) 100, 388, 1000, 1092
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
PshBI ATTAAT 1 cut(s) 656
Psp1406I AACGTT 1 cut(s) 1218
Psp6I CCWGG 1 cut(s) 840
PspFI CCCAGC 1 cut(s) 299
PspGI CCWGG 1 cut(s) 840
PspN4I GGNNCC 3 cut(s) 88, 427, 801
PspPI GGNCC 1 cut(s) 214
PsrI GAACNNNNNNTAC 2 cut(s) 1020, 1052
PstNI CAGNNNCTG 1 cut(s) 104
PsuI RGATCY 1 cut(s) 1006
PvuII CAGCTG 1 cut(s) 1001
RsaI GTAC 2 cut(s) 788, 1305
RsaNI GTAC 2 cut(s) 787, 1304
SapI GCTCTTC 2 cut(s) 357, 1265
SaqAI TTAA 6 cut(s) 126, 276, 335, 357, 656, 738
SatI GCNGC 4 cut(s) 99, 387, 999, 1091
Sau3AI GATC 6 cut(s) 154, 238, 525, 808, 1006, 1258
Sau96I GGNCC 1 cut(s) 214
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 2 cut(s) 331, 842
SduI GDGCHC 2 cut(s) 331, 508
SfaNI GCATC 4 cut(s) 216, 387, 541, 1132
Sfr274I CTCGAG 1 cut(s) 517
SinI GGWCC 1 cut(s) 214
SlaI CTCGAG 1 cut(s) 517
SmlI CTYRAG 5 cut(s) 191, 517, 692, 769, 1060
SmoI CTYRAG 5 cut(s) 191, 517, 692, 769, 1060
Sse9I AATT 8 cut(s) 318, 405, 653, 745, 832, 1020, 1065, 1225
SsiI CCGC 4 cut(s) 83, 131, 410, 640
StyD4I CCNGG 2 cut(s) 329, 840
StyI CCWWGG 3 cut(s) 429, 1146, 1299
TaaI ACNGT 2 cut(s) 488, 666
TaiI ACGT 2 cut(s) 181, 1221
TaqI TCGA 1 cut(s) 518
TasI AATT 8 cut(s) 318, 405, 653, 745, 832, 1020, 1065, 1225
TfiI GAWTC 1 cut(s) 853
Tru1I TTAA 6 cut(s) 126, 276, 335, 357, 656, 738
Tru9I TTAA 6 cut(s) 126, 276, 335, 357, 656, 738
TscAI CASTG 3 cut(s) 109, 288, 761
TseFI GTSAC 3 cut(s) 202, 584, 1277
TseI GCWGC 4 cut(s) 98, 386, 998, 1090
Tsp45I GTSAC 3 cut(s) 202, 584, 1277
TspDTI ATGAA 3 cut(s) 445, 666, 1253
TspRI CASTG 3 cut(s) 109, 288, 761
VpaK11BI GGWCC 1 cut(s) 214
VspI ATTAAT 1 cut(s) 656
XapI RAATTY 2 cut(s) 745, 1225
XceI RCATGY 1 cut(s) 973
XcmI CCANNNNNNNNNTGG 1 cut(s) 1153
XhoI CTCGAG 1 cut(s) 517
XmiI GTMKAC 1 cut(s) 1105
XmnI GAANNNNTTC 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.