Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002585

Physical Location & Seq

Genomic Coordinates Reverse (-)

25893780 .. 25896586

Gene Structure 2807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G64760.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGAAGAAAGTAGACAACTCGAATCGTCGATTGATCGGCTGCTGAACGAAGAGAAACAGATGAGGCTCGCAGAAAATGTCGCCGGAACTAGAAAAGCAGCTACCGAGATTCTTAAGCTTTGTTTCGAAGCTAAGGATTGGAAACTTCTCAACGAACAGATTTTGAATCTCTCGAAGAAACGTGGTCAGCTTAAGCAGGCTGTACAATCCATGGTGCAACAAGCAATGCAGTATATTGATCAGACACTAGACATAGAAACTCGGATTGAGCTTATTAAGACTCTAAACAATGTAGCTGCTGGAAAGATATATGTCGAAATCGAGAGAGCTCGTTTGACCAAGATGCTTGCTAAGATTAAGGAAGAACAAGGTTTGATTGCTGAAGCTGCGGATCTCATGCAAGAAGTTGCTGTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGCTTTCATTCTTGAACAAGTCCGCTTGTGTTTGGATCAAAAAGATTTTGTCCGTGCACAAATTTTATCTAGGAAGATCAACCCAAGAGTGTTTGATGCAGATACCACGAAGGAGAAAAAGAAGCCTAAGGAAGGTGAAAACATGGTAGAGGAGGCTCCGGCTGATATACCTACATTGTTGGTGCTAAAACGGATTTACTATGAGCTAATGATTCGGTATTATTCTCACAACAATGAGTACATTGAGATATGCCGTAGCTACAAGGCGATATATGATATCCCTTCTGTAAAGGAAAACCCAGAACAATGGATTCCAGTCCTGAGAAAGATTTGCTGGTTTTTGGCCTTGGCACCACATGATCCAATGCAATCGAGCCTACTCAATGCAACCTTGGAAGATAAAAAGTTATCAGAGATTCCTGATTTCAAGATGCTTCTAAAACAGATTGTTACAATGGAGGTGATTCAGTGGACATCTCTCTGGAATAAATACAAGGACGAGTTTGAGAATGAGAAAAACATGATTGGAGGCTCTTTGGGTGACAAAGCTGGTGAAGATCTCAAACTAAGAATAATCGAACACAATATTCTCGTTGTCTCAAAGTACTACTCAAGGATTACCTTTAAGAGACTTGCAGAACTTTTATGCCTAACCACTGAGGAAGCAGAGAAGCATCTATCTGAAATGGTTGTGTCCAAAGCCTTGATAGCAAAAATCGACAGACCATCAGGAATAATCTGCTTCCAGATTGTTAAAGACAGCAACGAAATCCTCAACTCGTGGGCAACAAACTTGGAGAAGCTTTTGGATCTTGTTGAAAAGAGTTGTCACCAAATTCACAAAGAAACAATGGTTCATAAAGTTGCACTAAGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031595 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048856 GO:0051603 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

442

Amino Acids

51.12

Weight (kDa)

6.71

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSMD12-CSN4_N	PF22241	10 - 189	7.8e-66	PSMD12/CSN4, N-terminal
PSMD12-CSN4_N	PF22241	212 - 248	2.6e-08	PSMD12/CSN4, N-terminal
PCI	PF01399	333 - 399	1.7e-18	PCI domain
RPN5_C	PF18098	405 - 437	1.3e-11	26S proteasome regulatory subunit RPN5 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09900 AT5G09900 AT5G64760 AT5G64760 AT5G64760
fragaria_vesca	FvH4_1g23340 FvH4_1g23340 FvH4_1g23340 FvH4_1g23340 FvH4_1g23340 FvH4_5g27840
malus_domestica	MD02G1223100.v1.1 MD07G1091700.v1.1
prunus_persica	Prupe.2G117100_v2.0.a1 Prupe.2G119800_v2.0.a1
pyrus_communis	pycom07g07500
rosa_chinensis	RchiOBHm_Chr2g0118191 RchiOBHm_Chr7g0219741
rosa_laevigata	RLG00000002273 RLG00000018402
rosa_multiflora	Rmu_sc0001925.1_g000001 Rmu_sc0005014.1_g000001 Rmu_sc0007335.1_g000004
rosa_roxburghii	Rroxscaffold_2G00125830 Rroxscaffold_3G00239890
rosa_rugosa	Rorug02G0217200 Rorug07G0187400.1 Rorug07G0187500
rosa_samantha	Rh2AG273400 Rh2BG285600 Rh2DG281400 Rh2DG299400 Rh7AG331200 Rh7BG321000 Rh7CG348600 Rh7DG326700
rosa_wichuraiana	Rw2G021620 Rw2G021640 Rw2G021760 Rw7G027880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	799
AccI	GTMKAC	1 cut(s)	13
AciI	CCGC	2 cut(s)	389, 472
AclWI	GGATC	4 cut(s)	399, 492, 803, 1266
AcsI	RAATTY	2 cut(s)	510, 1284
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	3 cut(s)	204, 689, 1055
AfiI	CCNNNNNNNGG	1 cut(s)	581
AflII	CTTAAG	2 cut(s)	113, 191
AgsI	TTSAA	4 cut(s)	166, 464, 877, 1268
Alw21I	GWGCWC	2 cut(s)	331, 508
Alw26I	GTCTC	3 cut(s)	410, 1051, 1072
Alw44I	GTGCAC	1 cut(s)	504
AlwI	GGATC	4 cut(s)	399, 492, 803, 1266
AoxI	GGCC	1 cut(s)	792
ApaLI	GTGCAC	1 cut(s)	504
ApeKI	GCWGC	4 cut(s)	40, 98, 296, 386
ApoI	RAATTY	2 cut(s)	510, 1284
AsuHPI	GGTGA	5 cut(s)	596, 922, 1001, 1013, 1271
AsuII	TTCGAA	1 cut(s)	126
AxyI	CCTNAGG	1 cut(s)	576
BaeGI	GKGCMC	1 cut(s)	508
BanI	GGYRCC	1 cut(s)	799
BanII	GRGCYC	1 cut(s)	331
BauI	CACGAG	1 cut(s)	1228
Bbv12I	GWGCWC	2 cut(s)	331, 508
BbvI	GCAGC	4 cut(s)	27, 110, 283, 373
BccI	CCATC	1 cut(s)	1183
BceAI	ACGGC	1 cut(s)	687
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	3 cut(s)	410, 1051, 1072
BfaI	CTAG	3 cut(s)	90, 248, 519
BfrI	CTTAAG	2 cut(s)	113, 191
BglII	AGATCT	1 cut(s)	1006
BisI	GCNGC	4 cut(s)	41, 99, 297, 387
BlsI	GCNGC	4 cut(s)	42, 100, 298, 388
BmcAI	AGTACT	1 cut(s)	1055
BmiI	GGNNCC	2 cut(s)	606, 801
BmsI	GCATC	4 cut(s)	333, 535, 870, 1132
Bpu10I	CCTNAGC	1 cut(s)	132
Bpu14I	TTCGAA	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	1045
BsaJI	CCNNGG	3 cut(s)	210, 795, 840
Bsc4I	CCNNNNNNNGG	1 cut(s)	581
Bse1I	ACTGG	1 cut(s)	764
Bse21I	CCTNAGG	1 cut(s)	576
Bse3DI	GCAATG	1 cut(s)	231
BseDI	CCNNGG	3 cut(s)	210, 795, 840
BseLI	CCNNNNNNNGG	1 cut(s)	581
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	3 cut(s)	432, 761, 1098
BseNI	ACTGG	1 cut(s)	764
BseRI	GAGGAG	1 cut(s)	614
BseSI	GKGCMC	1 cut(s)	508
BseXI	GCAGC	4 cut(s)	27, 110, 283, 373
BshFI	GGCC	1 cut(s)	794
BshNI	GGYRCC	1 cut(s)	799
BsiHKAI	GWGCWC	2 cut(s)	331, 508
BsiSI	CCGG	2 cut(s)	84, 608
BslI	CCNNNNNNNGG	1 cut(s)	581
BsmAI	GTCTC	3 cut(s)	410, 1051, 1072
BsnI	GGCC	1 cut(s)	794
Bsp119I	TTCGAA	1 cut(s)	126
Bsp1286I	GDGCHC	2 cut(s)	331, 508
Bsp1407I	TGTACA	1 cut(s)	202
Bsp143I	GATC	8 cut(s)	34, 238, 391, 484, 525, 808, 1006, 1258
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	2 cut(s)	389, 472
BspANI	GGCC	1 cut(s)	794
BspCNI	CTCAG	3 cut(s)	433, 762, 1099
BspLI	GGNNCC	2 cut(s)	606, 801
BspPI	GGATC	4 cut(s)	399, 492, 803, 1266
BspT104I	TTCGAA	1 cut(s)	126
BspT107I	GGYRCC	1 cut(s)	799
BspTI	CTTAAG	2 cut(s)	113, 191
BsrDI	GCAATG	1 cut(s)	231
BsrGI	TGTACA	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	764
BssECI	CCNNGG	3 cut(s)	210, 795, 840
BssMI	GATC	8 cut(s)	34, 238, 391, 484, 525, 808, 1006, 1258
BssSI	CACGAG	1 cut(s)	1228
BssT1I	CCWWGG	3 cut(s)	210, 795, 840
Bst2BI	CACGAG	1 cut(s)	1228
Bst6I	CTCTTC	1 cut(s)	45
BstAFI	CTTAAG	2 cut(s)	113, 191
BstAUI	TGTACA	1 cut(s)	202
BstBI	TTCGAA	1 cut(s)	126
BstC8I	GCNNGC	3 cut(s)	69, 198, 348
BstDEI	CTNAG	8 cut(s)	132, 351, 441, 576, 770, 1016, 1107, 1319
BstDSI	CCRYGG	1 cut(s)	210
BstENI	CCTNNNNNAGG	1 cut(s)	579
BstKTI	GATC	8 cut(s)	37, 241, 394, 487, 528, 811, 1009, 1261
BstMAI	GTCTC	3 cut(s)	410, 1051, 1072
BstMBI	GATC	8 cut(s)	34, 238, 391, 484, 525, 808, 1006, 1258
BstMWI	GCNNNNNNNGC	3 cut(s)	386, 1157, 1322
BstSLI	GKGCMC	1 cut(s)	508
BstV1I	GCAGC	4 cut(s)	27, 110, 283, 373
BstX2I	RGATCY	3 cut(s)	391, 1006, 1258
BstXI	CCANNNNNNTGG	1 cut(s)	756
BstYI	RGATCY	3 cut(s)	391, 1006, 1258
Bsu36I	CCTNAGG	1 cut(s)	576
BsuRI	GGCC	1 cut(s)	794
BtgI	CCRYGG	1 cut(s)	210
BtsIMutI	CAGTG	2 cut(s)	923, 1104
Cac8I	GCNNGC	3 cut(s)	69, 198, 348
Csp6I	GTAC	3 cut(s)	203, 688, 1054
CviAII	CATG	5 cut(s)	211, 397, 592, 806, 970
CviQI	GTAC	3 cut(s)	203, 688, 1054
DdeI	CTNAG	8 cut(s)	132, 351, 441, 576, 770, 1016, 1107, 1319
DpnI	GATC	8 cut(s)	36, 240, 393, 486, 527, 810, 1008, 1260
DpnII	GATC	8 cut(s)	34, 238, 391, 484, 525, 808, 1006, 1258
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Ecl136II	GAGCTC	1 cut(s)	329
Eco130I	CCWWGG	3 cut(s)	210, 795, 840
Eco24I	GRGCYC	1 cut(s)	331
Eco32I	GATATC	1 cut(s)	727
Eco53kI	GAGCTC	1 cut(s)	329
Eco57I	CTGAAG	1 cut(s)	402
Eco81I	CCTNAGG	1 cut(s)	576
EcoICRI	GAGCTC	1 cut(s)	329
EcoNI	CCTNNNNNAGG	1 cut(s)	579
EcoRV	GATATC	1 cut(s)	727
EcoT14I	CCWWGG	3 cut(s)	210, 795, 840
EcoT38I	GRGCYC	1 cut(s)	331
ErhI	CCWWGG	3 cut(s)	210, 795, 840
FaeI	CATG	5 cut(s)	214, 400, 595, 809, 973
FatI	CATG	5 cut(s)	210, 396, 591, 805, 969
FbaI	TGATCA	1 cut(s)	238
FblI	GTMKAC	1 cut(s)	13
Fnu4HI	GCNGC	4 cut(s)	41, 99, 297, 387
FriOI	GRGCYC	1 cut(s)	331
Fsp4HI	GCNGC	4 cut(s)	41, 99, 297, 387
FspBI	CTAG	3 cut(s)	90, 248, 519
GluI	GCNGC	4 cut(s)	41, 99, 297, 387
HaeIII	GGCC	1 cut(s)	794
HapII	CCGG	2 cut(s)	84, 608
Hin1II	CATG	5 cut(s)	214, 400, 595, 809, 973
HindIII	AAGCTT	2 cut(s)	116, 1250
HinfI	GANTC	8 cut(s)	23, 109, 166, 280, 661, 760, 865, 913
HpaII	CCGG	2 cut(s)	84, 608
HphI	GGTGA	5 cut(s)	596, 922, 1001, 1013, 1271
Hpy166II	GTNNAC	3 cut(s)	14, 506, 921
Hpy188I	TCNGA	4 cut(s)	243, 264, 862, 1132
Hpy188III	TCNNGA	9 cut(s)	172, 322, 461, 769, 869, 877, 931, 1179, 1195
Hpy8I	GTNNAC	3 cut(s)	14, 506, 921
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	3 cut(s)	553, 575, 741
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	9 cut(s)	217, 229, 400, 506, 548, 817, 836, 1085, 1316
HpyF10VI	GCNNNNNNNGC	3 cut(s)	386, 1157, 1322
HpyF3I	CTNAG	8 cut(s)	132, 351, 441, 576, 770, 1016, 1107, 1319
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	5 cut(s)	214, 400, 595, 809, 973
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	8 cut(s)	34, 238, 391, 484, 525, 808, 1006, 1258
LmnI	GCTCC	1 cut(s)	610
Lsp1109I	GCAGC	4 cut(s)	27, 110, 283, 373
LweI	GCATC	4 cut(s)	333, 535, 870, 1132
MaeI	CTAG	3 cut(s)	90, 248, 519
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	3 cut(s)	898, 989, 1277
MalI	GATC	8 cut(s)	36, 240, 393, 486, 527, 810, 1008, 1260
MboI	GATC	8 cut(s)	34, 238, 391, 484, 525, 808, 1006, 1258
MboII	GAAGA	7 cut(s)	17, 62, 187, 374, 535, 857, 1016
MflI	RGATCY	3 cut(s)	391, 1006, 1258
MhlI	GDGCHC	2 cut(s)	331, 508
MluCI	AATT	3 cut(s)	447, 510, 1284
MlyI	GAGTC	1 cut(s)	274
MnlI	CCTC	7 cut(s)	57, 592, 595, 901, 971, 1102, 1232
MseI	TTAA	6 cut(s)	114, 192, 276, 357, 1074, 1203
MslI	CAYNNNNRTG	1 cut(s)	681
MspCI	CTTAAG	2 cut(s)	113, 191
MspI	CCGG	2 cut(s)	84, 608
MwoI	GCNNNNNNNGC	3 cut(s)	386, 1157, 1322
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	8 cut(s)	34, 238, 391, 484, 525, 808, 1006, 1258
NlaIII	CATG	5 cut(s)	214, 400, 595, 809, 973
NlaIV	GGNNCC	2 cut(s)	606, 801
NmuCI	GTSAC	2 cut(s)	989, 1277
NspV	TTCGAA	1 cut(s)	126
PfeI	GAWTC	7 cut(s)	23, 109, 166, 661, 760, 865, 913
PkrI	GCNGC	4 cut(s)	42, 100, 298, 388
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
Psp124BI	GAGCTC	1 cut(s)	331
PspN4I	GGNNCC	2 cut(s)	606, 801
PsuI	RGATCY	3 cut(s)	391, 1006, 1258
RsaI	GTAC	3 cut(s)	204, 689, 1055
RsaNI	GTAC	3 cut(s)	203, 688, 1054
RseI	CAYNNNNRTG	1 cut(s)	681
SacI	GAGCTC	1 cut(s)	331
SaqAI	TTAA	6 cut(s)	114, 192, 276, 357, 1074, 1203
SatI	GCNGC	4 cut(s)	41, 99, 297, 387
Sau3AI	GATC	8 cut(s)	34, 238, 391, 484, 525, 808, 1006, 1258
ScaI	AGTACT	1 cut(s)	1055
SchI	GAGTC	1 cut(s)	274
SduI	GDGCHC	2 cut(s)	331, 508
SfaNI	GCATC	4 cut(s)	333, 535, 870, 1132
SfuI	TTCGAA	1 cut(s)	126
SmiMI	CAYNNNNRTG	1 cut(s)	681
SmlI	CTYRAG	3 cut(s)	113, 191, 1060
SmoI	CTYRAG	3 cut(s)	113, 191, 1060
Sse9I	AATT	3 cut(s)	447, 510, 1284
SsiI	CCGC	2 cut(s)	389, 472
SspI	AATATT	1 cut(s)	1036
SspMI	CTAG	3 cut(s)	90, 248, 519
SstI	GAGCTC	1 cut(s)	331
StyI	CCWWGG	3 cut(s)	210, 795, 840
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	9 cut(s)	21, 29, 126, 173, 315, 321, 821, 1026, 1167
TasI	AATT	3 cut(s)	447, 510, 1284
TatI	WGTACW	3 cut(s)	202, 687, 1053
TfiI	GAWTC	7 cut(s)	23, 109, 166, 661, 760, 865, 913
Tru1I	TTAA	6 cut(s)	114, 192, 276, 357, 1074, 1203
Tru9I	TTAA	6 cut(s)	114, 192, 276, 357, 1074, 1203
TscAI	CASTG	2 cut(s)	923, 1111
TseFI	GTSAC	2 cut(s)	989, 1277
TseI	GCWGC	4 cut(s)	40, 98, 296, 386
Tsp45I	GTSAC	2 cut(s)	989, 1277
TspDTI	ATGAA	2 cut(s)	445, 1295
TspGWI	ACGGA	2 cut(s)	491, 655
TspRI	CASTG	2 cut(s)	923, 1111
Vha464I	CTTAAG	2 cut(s)	113, 191
VneI	GTGCAC	1 cut(s)	504
XagI	CCTNNNNNAGG	1 cut(s)	579
XapI	RAATTY	2 cut(s)	510, 1284
XmiI	GTMKAC	1 cut(s)	13
XspI	CTAG	3 cut(s)	90, 248, 519
ZrmI	AGTACT	1 cut(s)	1055

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.