pycom07g07500

26S proteasome non-ATPase regulatory subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
6809177 .. 6813096
3920 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g07500.11

Sequence Viewer

Length: 1329 bp
ATGGAAGGAGGAGGTGATTTGGATAACCAAATTGAGAAGTTGCTGAATGTAGAGAAGCAGATGAGGCTTGCTGGTGATGTAGCAGGAACCAAGAAGGCCGCCATTGACATTCTTGATCTCTGCTTTAAAGCGGGTGCATGGAAGACTCTCAATGATCAGATTGTTGTATTGTCCAAACGTCGTGGTCAGCTCAAGCAGGCTGTAACTGCAATGGTCCAACAAGCGATGCAATACATTGATCAGACACCGGATATTGAAACTCGTGTAGAGCTTATTAAAACACTGAATAATGTTTCTGCTGGGAAGATATATGTTGAAATTGAGAGAGCTCGGTTAATCAAGAGACTTGCAAAGATTAAGGAAGAGCAAGGGCTTATTGCTGAAGCTGCTGATTTGATGCAAGAAATTGCGGTGGAAACTTTTGGTGCCATGGCAAAAACTGAGAAGATTGCTTTCATTCTTGAACAAGTTCGGTTGTGCTTAGATCGTCAGGATTATGTTCGTGCTCAAATACTCTCAAGGAAGATTAGTCCCAGAGTTTTTGATGTTGATGCTTCAAAAGAAAAGAAAAAACCTAAAGAAGGTGACAATGTTGTTGAAGAAGCTCCTGCTGATATACCATCGCTCTTGGAGTTGAAGCGGATCTACTATGAATTAATGATACGGTATTATTTTCACACCAATGATTACCTTGAGATTTGCCGTTGCTACAAGGCGATATACGATATTCCTTCTGTTAAGGAGAATCCAGCCCAGTGGATACCTGTCTTGAGGAAAATCTGTTGGTACTTGGTTCTGGCTCCATACGATTCAATGCAGTCAAGCCTTCTCAATTCCATATTGGAGGATAAGAATCTTTCTGAACTTCCATATTTTAGGTTGCTGTTGAAACAGGTGGTAACTATGGAGGTCATACAATGGACAACTCTTTGGAATACATACAAGGATGAGTTTGAGAGTGAGAAGAATATGCTTGGAGGCTCTTTGGGTGACAAAGCAGCTGAAGATCTGAGACAGAGGATTATTGAACATAACATACTTGTTGTTTCAAAGAACTACTCAAGAATTACCTTGAAAAGACTTGCAGAGCTGCTGTGTCTGAGTATCCAGGAAGCTGAGAAGCATCTGTCGGATATGGTTGTGTCCAAGGCACTAGTGGCCAAGATTGACAGGCCAGTAGGAATAGTCTGTTTCCAAACTGCAAAGGATAGCAACAATGTTCTGAATTCGTGGGCTATGAACTTGGAGAAACTGATCGATCTTGTTGAGAAGAGCTGCCACCAAATACACAAAGAAACCATGGTACACAAGGCTTCTCTGAAGGTTTGA

Protein Analysis

443

Amino Acids

50.58

Weight (kDa)

7.52

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 425
AciI CCGC 4 cut(s) 99, 131, 410, 640
AclWI GGATC 1 cut(s) 650
AcoI YGGCCR 1 cut(s) 1158
AcsI RAATTY 1 cut(s) 1225
AcuI CTGAAG 2 cut(s) 402, 1023
AfaI GTAC 2 cut(s) 788, 1305
AfiI CCNNNNNNNGG 1 cut(s) 581
AhlI ACTAGT 1 cut(s) 1153
AjnI CCWGG 1 cut(s) 1107
AluBI AGCT 9 cut(s) 190, 271, 329, 386, 605, 1001, 1090, 1115, 1275
AluI AGCT 9 cut(s) 190, 271, 329, 386, 605, 1001, 1090, 1115, 1275
Alw21I GWGCWC 2 cut(s) 331, 508
Alw26I GTCTC 2 cut(s) 337, 1006
AlwI GGATC 1 cut(s) 650
AoxI GGCC 3 cut(s) 96, 1158, 1172
ApeKI GCWGC 4 cut(s) 386, 998, 1090, 1275
ApoI RAATTY 1 cut(s) 1225
AseI ATTAAT 1 cut(s) 656
Asp700I GAANNNNTTC 1 cut(s) 468
AspS9I GGNCC 1 cut(s) 214
AsuHPI GGTGA 4 cut(s) 26, 86, 596, 1001
AvaII GGWCC 1 cut(s) 214
BalI TGGCCA 1 cut(s) 1160
BanI GGYRCC 1 cut(s) 425
BanII GRGCYC 1 cut(s) 331
BarI GAAGNNNNNNTAC 2 cut(s) 629, 661
BauI CACGAG 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 149
Bbv12I GWGCWC 2 cut(s) 331, 508
BbvI GCAGC 4 cut(s) 373, 1010, 1077, 1262
BccI CCATC 1 cut(s) 628
BceAI ACGGC 1 cut(s) 687
BciT130I CCWGG 1 cut(s) 1109
BciVI GTATCC 2 cut(s) 753, 1115
BclI TGATCA 2 cut(s) 154, 238
BcoDI GTCTC 2 cut(s) 337, 1006
BcuI ACTAGT 1 cut(s) 1153
BfaI CTAG 1 cut(s) 1154
BfuI GTATCC 2 cut(s) 753, 1115
BglII AGATCT 1 cut(s) 1006
BisI GCNGC 5 cut(s) 99, 387, 999, 1091, 1276
BlsI GCNGC 5 cut(s) 100, 388, 1000, 1092, 1277
Bme1390I CCNGG 1 cut(s) 1109
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 3 cut(s) 88, 427, 801
BmrFI CCNGG 1 cut(s) 1109
BmrI ACTGGG 1 cut(s) 748
BmsI GCATC 4 cut(s) 216, 387, 541, 1132
BmuI ACTGGG 1 cut(s) 748
BpiI GAAGAC 1 cut(s) 149
BpuEI CTTGAG 5 cut(s) 176, 502, 713, 790, 1045
Bsa29I ATCGAT 1 cut(s) 1257
BsaBI GATNNNNATC 1 cut(s) 852
BsaJI CCNNGG 3 cut(s) 429, 1146, 1299
BsaWI WCCGGW 1 cut(s) 247
Bsc4I CCNNNNNNNGG 1 cut(s) 581
Bse1I ACTGG 2 cut(s) 754, 1175
Bse3DI GCAATG 1 cut(s) 216
Bse8I GATNNNNATC 1 cut(s) 852
BseBI CCWGG 1 cut(s) 1109
BseCI ATCGAT 1 cut(s) 1257
BseDI CCNNGG 3 cut(s) 429, 1146, 1299
BseGI GGATG 1 cut(s) 952
BseJI GATNNNNATC 1 cut(s) 852
BseLI CCNNNNNNNGG 1 cut(s) 581
BseMI GCAATG 1 cut(s) 216
BseMII CTCAG 4 cut(s) 432, 1001, 1091, 1107
BseNI ACTGG 2 cut(s) 754, 1175
BseRI GAGGAG 1 cut(s) 24
BseXI GCAGC 4 cut(s) 373, 1010, 1077, 1262
BseYI CCCAGC 1 cut(s) 299
BshFI GGCC 3 cut(s) 98, 1160, 1174
BshNI GGYRCC 1 cut(s) 425
BshVI ATCGAT 1 cut(s) 1257
BsiHKAI GWGCWC 2 cut(s) 331, 508
BsiSI CCGG 1 cut(s) 248
BslFI GGGAC 1 cut(s) 516
BslI CCNNNNNNNGG 1 cut(s) 581
BsmAI GTCTC 2 cut(s) 337, 1006
BsmFI GGGAC 1 cut(s) 516
BsnI GGCC 3 cut(s) 98, 1160, 1174
Bsp1286I GDGCHC 2 cut(s) 331, 508
Bsp143I GATC 8 cut(s) 115, 154, 238, 484, 642, 1006, 1254, 1258
Bsp19I CCATGG 2 cut(s) 429, 1299
BspACI CCGC 4 cut(s) 99, 131, 410, 640
BspANI GGCC 3 cut(s) 98, 1160, 1174
BspCNI CTCAG 4 cut(s) 433, 1002, 1092, 1108
BspDI ATCGAT 1 cut(s) 1257
BspLI GGNNCC 3 cut(s) 88, 427, 801
BspPI GGATC 1 cut(s) 650
BspQI GCTCTTC 2 cut(s) 357, 1265
BspT107I GGYRCC 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 216
BsrI ACTGG 2 cut(s) 754, 1175
BssECI CCNNGG 3 cut(s) 429, 1146, 1299
BssMI GATC 8 cut(s) 115, 154, 238, 484, 642, 1006, 1254, 1258
BssSI CACGAG 1 cut(s) 261
BssT1I CCWWGG 3 cut(s) 429, 1146, 1299
Bst2BI CACGAG 1 cut(s) 261
Bst2UI CCWGG 1 cut(s) 1109
Bst4CI ACNGT 1 cut(s) 666
Bst6I CTCTTC 2 cut(s) 357, 1265
BstC8I GCNNGC 2 cut(s) 69, 198
BstDEI CTNAG 5 cut(s) 441, 481, 1010, 1100, 1116
BstDSI CCRYGG 2 cut(s) 429, 1299
BstENI CCTNNNNNAGG 1 cut(s) 579
BstF5I GGATG 1 cut(s) 952
BstKTI GATC 8 cut(s) 118, 157, 241, 487, 645, 1009, 1257, 1261
BstMAI GTCTC 2 cut(s) 337, 1006
BstMBI GATC 8 cut(s) 115, 154, 238, 484, 642, 1006, 1254, 1258
BstMWI GCNNNNNNNGC 4 cut(s) 64, 206, 386, 1157
BstNI CCWGG 1 cut(s) 1109
BstSCI CCNGG 1 cut(s) 1107
BstV1I GCAGC 4 cut(s) 373, 1010, 1077, 1262
BstV2I GAAGAC 1 cut(s) 149
BstX2I RGATCY 2 cut(s) 642, 1006
BstXI CCANNNNNNTGG 1 cut(s) 756
BstYI RGATCY 2 cut(s) 642, 1006
Bsu15I ATCGAT 1 cut(s) 1257
BsuI GTATCC 2 cut(s) 753, 1115
BsuRI GGCC 3 cut(s) 98, 1160, 1174
BsuTUI ATCGAT 1 cut(s) 1257
BtgI CCRYGG 2 cut(s) 429, 1299
BtgZI GCGATG 2 cut(s) 239, 606
BtsCI GGATG 1 cut(s) 952
BtsIMutI CAGTG 2 cut(s) 281, 761
Cac8I GCNNGC 2 cut(s) 69, 198
Cfr13I GGNCC 1 cut(s) 214
ClaI ATCGAT 1 cut(s) 1257
Csp6I GTAC 2 cut(s) 787, 1304
CspCI CAANNNNNGTGG 2 cut(s) 163, 198
CviAII CATG 3 cut(s) 138, 430, 1300
CviQI GTAC 2 cut(s) 787, 1304
DdeI CTNAG 5 cut(s) 441, 481, 1010, 1100, 1116
DpnI GATC 8 cut(s) 117, 156, 240, 486, 644, 1008, 1256, 1260
DpnII GATC 8 cut(s) 115, 154, 238, 484, 642, 1006, 1254, 1258
DraI TTTAAA 1 cut(s) 127
EaeI YGGCCR 1 cut(s) 1158
Eam1104I CTCTTC 2 cut(s) 357, 1265
EarI CTCTTC 2 cut(s) 357, 1265
Ecl136II GAGCTC 1 cut(s) 329
Eco130I CCWWGG 3 cut(s) 429, 1146, 1299
Eco24I GRGCYC 1 cut(s) 331
Eco47I GGWCC 1 cut(s) 214
Eco53kI GAGCTC 1 cut(s) 329
Eco57I CTGAAG 2 cut(s) 402, 1023
EcoICRI GAGCTC 1 cut(s) 329
EcoNI CCTNNNNNAGG 1 cut(s) 579
EcoRI GAATTC 1 cut(s) 1225
EcoRII CCWGG 1 cut(s) 1107
EcoT14I CCWWGG 3 cut(s) 429, 1146, 1299
EcoT38I GRGCYC 1 cut(s) 331
ErhI CCWWGG 3 cut(s) 429, 1146, 1299
FaeI CATG 3 cut(s) 141, 433, 1303
FaqI GGGAC 1 cut(s) 516
FatI CATG 3 cut(s) 137, 429, 1299
FauI CCCGC 1 cut(s) 124
FbaI TGATCA 2 cut(s) 154, 238
Fnu4HI GCNGC 5 cut(s) 99, 387, 999, 1091, 1276
FokI GGATG 1 cut(s) 959
FriOI GRGCYC 1 cut(s) 331
Fsp4HI GCNGC 5 cut(s) 99, 387, 999, 1091, 1276
FspBI CTAG 1 cut(s) 1154
GluI GCNGC 5 cut(s) 99, 387, 999, 1091, 1276
GsaI CCCAGC 1 cut(s) 303
HaeIII GGCC 3 cut(s) 98, 1160, 1174
HapII CCGG 1 cut(s) 248
Hin1II CATG 3 cut(s) 141, 433, 1303
HinfI GANTC 4 cut(s) 145, 745, 809, 853
HpaII CCGG 1 cut(s) 248
HphI GGTGA 4 cut(s) 26, 86, 596, 1001
Hpy166II GTNNAC 1 cut(s) 1306
Hpy188I TCNGA 8 cut(s) 159, 243, 862, 1011, 1101, 1132, 1224, 1320
Hpy188III TCNNGA 6 cut(s) 113, 340, 461, 491, 769, 1062
Hpy8I GTNNAC 1 cut(s) 1306
Hpy99I CGWCG 1 cut(s) 183
HpyAV CCTTC 5 cut(s) 88, 575, 741, 836, 1315
HpyCH4III ACNGT 1 cut(s) 666
HpyCH4IV ACGT 1 cut(s) 178
HpyCH4V TGCA 8 cut(s) 137, 209, 229, 350, 400, 817, 1085, 1202
HpyF10VI GCNNNNNNNGC 4 cut(s) 64, 206, 386, 1157
HpyF3I CTNAG 5 cut(s) 441, 481, 1010, 1100, 1116
HpySE526I ACGT 1 cut(s) 178
Hsp92II CATG 3 cut(s) 141, 433, 1303
Ksp22I TGATCA 2 cut(s) 154, 238
Kzo9I GATC 8 cut(s) 115, 154, 238, 484, 642, 1006, 1254, 1258
LguI GCTCTTC 2 cut(s) 357, 1265
LmnI GCTCC 2 cut(s) 610, 805
Lsp1109I GCAGC 4 cut(s) 373, 1010, 1077, 1262
LweI GCATC 4 cut(s) 216, 387, 541, 1132
MaeI CTAG 1 cut(s) 1154
MaeII ACGT 1 cut(s) 178
MaeIII GTNAC 4 cut(s) 202, 584, 898, 989
MalI GATC 8 cut(s) 117, 156, 240, 486, 644, 1008, 1256, 1260
MboI GATC 8 cut(s) 115, 154, 238, 484, 642, 1006, 1254, 1258
MboII GAAGA 9 cut(s) 154, 316, 374, 457, 535, 611, 976, 1016, 1282
MflI RGATCY 2 cut(s) 642, 1006
MhlI GDGCHC 2 cut(s) 331, 508
MlsI TGGCCA 1 cut(s) 1160
MluCI AATT 7 cut(s) 30, 318, 405, 653, 832, 1065, 1225
MluNI TGGCCA 1 cut(s) 1160
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 2 cut(s) 241, 1110
MnlI CCTC 7 cut(s) 5, 57, 765, 838, 901, 971, 1011
Mox20I TGGCCA 1 cut(s) 1160
MroXI GAANNNNTTC 1 cut(s) 468
MscI TGGCCA 1 cut(s) 1160
MseI TTAA 6 cut(s) 126, 276, 335, 357, 656, 738
MslI CAYNNNNRTG 1 cut(s) 681
Msp20I TGGCCA 1 cut(s) 1160
MspA1I CMGCKG 1 cut(s) 1001
MspI CCGG 1 cut(s) 248
MspR9I CCNGG 1 cut(s) 1109
MvaI CCWGG 1 cut(s) 1109
MwoI GCNNNNNNNGC 4 cut(s) 64, 206, 386, 1157
NcoI CCATGG 2 cut(s) 429, 1299
NdeII GATC 8 cut(s) 115, 154, 238, 484, 642, 1006, 1254, 1258
NlaIII CATG 3 cut(s) 141, 433, 1303
NlaIV GGNNCC 3 cut(s) 88, 427, 801
NmuCI GTSAC 2 cut(s) 584, 989
PciSI GCTCTTC 2 cut(s) 357, 1265
PdmI GAANNNNTTC 1 cut(s) 468
PfeI GAWTC 3 cut(s) 745, 809, 853
PfoI TCCNGGA 1 cut(s) 1107
PkrI GCNGC 5 cut(s) 100, 388, 1000, 1092, 1277
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
PshBI ATTAAT 1 cut(s) 656
Psp124BI GAGCTC 1 cut(s) 331
Psp6I CCWGG 1 cut(s) 1107
PspFI CCCAGC 1 cut(s) 299
PspGI CCWGG 1 cut(s) 1107
PspN4I GGNNCC 3 cut(s) 88, 427, 801
PspPI GGNCC 1 cut(s) 214
PsrI GAACNNNNNNTAC 2 cut(s) 1020, 1052
PsuI RGATCY 2 cut(s) 642, 1006
PvuII CAGCTG 1 cut(s) 1001
RsaI GTAC 2 cut(s) 788, 1305
RsaNI GTAC 2 cut(s) 787, 1304
RseI CAYNNNNRTG 1 cut(s) 681
SacI GAGCTC 1 cut(s) 331
SapI GCTCTTC 2 cut(s) 357, 1265
SaqAI TTAA 6 cut(s) 126, 276, 335, 357, 656, 738
SatI GCNGC 5 cut(s) 99, 387, 999, 1091, 1276
Sau3AI GATC 8 cut(s) 115, 154, 238, 484, 642, 1006, 1254, 1258
Sau96I GGNCC 1 cut(s) 214
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 1109
SduI GDGCHC 2 cut(s) 331, 508
SfaNI GCATC 4 cut(s) 216, 387, 541, 1132
SinI GGWCC 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 681
SmlI CTYRAG 5 cut(s) 191, 517, 692, 769, 1060
SmoI CTYRAG 5 cut(s) 191, 517, 692, 769, 1060
SpeI ACTAGT 1 cut(s) 1153
Sse9I AATT 7 cut(s) 30, 318, 405, 653, 832, 1065, 1225
SsiI CCGC 4 cut(s) 99, 131, 410, 640
SspMI CTAG 1 cut(s) 1154
SstI GAGCTC 1 cut(s) 331
StyD4I CCNGG 1 cut(s) 1107
StyI CCWWGG 3 cut(s) 429, 1146, 1299
TaaI ACNGT 1 cut(s) 666
TaiI ACGT 1 cut(s) 181
TaqI TCGA 1 cut(s) 1257
TasI AATT 7 cut(s) 30, 318, 405, 653, 832, 1065, 1225
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 3 cut(s) 745, 809, 853
Tru1I TTAA 6 cut(s) 126, 276, 335, 357, 656, 738
Tru9I TTAA 6 cut(s) 126, 276, 335, 357, 656, 738
TscAI CASTG 2 cut(s) 288, 761
TseFI GTSAC 2 cut(s) 584, 989
TseI GCWGC 4 cut(s) 386, 998, 1090, 1275
Tsp45I GTSAC 2 cut(s) 584, 989
TspDTI ATGAA 3 cut(s) 445, 666, 1253
TspRI CASTG 2 cut(s) 288, 761
VpaK11BI GGWCC 1 cut(s) 214
VspI ATTAAT 1 cut(s) 656
XagI CCTNNNNNAGG 1 cut(s) 579
XapI RAATTY 1 cut(s) 1225
XcmI CCANNNNNNNNNTGG 1 cut(s) 1153
XmnI GAANNNNTTC 1 cut(s) 468
XspI CTAG 1 cut(s) 1154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.