Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002585

Physical Location & Seq

Genomic Coordinates Reverse (-)

20903556 .. 20904091

Gene Structure 536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0217200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGAGCATGAGCAAGCGGTCTACCCAGCTGACATGGCAAACAGTGAGTTCATCAAACCACTCCTGTCAAATGACATTTCCATTATCTTTCCACAGCCCATGTTCAGTTATTACGAGCCGGGTGGCTTCAAGGCCAATAATGGTGCTCGTTCTAAAAGCAATGCTTATGGTGAAAATGACCCTGCTGATAGCTCTTGGAGAATTGTATCTAGGAAGGGAAAGGGGAAAGGGCAACACTTTCCCAAGAATGGTCACTTGGCCCCAGGCCCTAATTCTGATAGACCGAAAGGCGCCAATGTTGTTCTTTCTGGTGTGTCCTTTAGAGATGTTGCTATGGGTCAAGCTGAGGCCAATCATCATGCGGTTGCTGATACGAAACAGAAGGAGGTTCTGATGGTTTGCTCTGATTCCTCCCAAGAGTGGTGTCGGCCCTGTGGCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031595 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048856 GO:0051603 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

147

Amino Acids

16.0

Weight (kDa)

6.96

Isoelectric Point (pI)

24.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09900 AT5G09900 AT5G64760 AT5G64760 AT5G64760
fragaria_vesca	FvH4_1g23340 FvH4_1g23340 FvH4_1g23340 FvH4_1g23340 FvH4_1g23340 FvH4_5g27840
malus_domestica	MD02G1223100.v1.1 MD07G1091700.v1.1
prunus_persica	Prupe.2G117100_v2.0.a1 Prupe.2G119800_v2.0.a1
pyrus_communis	pycom07g07500
rosa_chinensis	RchiOBHm_Chr2g0118191 RchiOBHm_Chr7g0219741
rosa_laevigata	RLG00000002273 RLG00000018402
rosa_multiflora	Rmu_sc0001925.1_g000001 Rmu_sc0005014.1_g000001 Rmu_sc0007335.1_g000004
rosa_roxburghii	Rroxscaffold_2G00125830 Rroxscaffold_3G00239890
rosa_rugosa	Rorug02G0217200 Rorug07G0187400.1 Rorug07G0187500
rosa_samantha	Rh2AG273400 Rh2BG285600 Rh2DG281400 Rh2DG299400 Rh7AG331200 Rh7BG321000 Rh7CG348600 Rh7DG326700
rosa_wichuraiana	Rw2G021620 Rw2G021640 Rw2G021760 Rw7G027880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	290, 437
AccI	GTMKAC	1 cut(s)	21
AciI	CCGC	2 cut(s)	17, 362
AcyI	GRCGYC	1 cut(s)	291
AfiI	CCNNNNNNNGG	2 cut(s)	248, 420
AgsI	TTSAA	1 cut(s)	130
AjnI	CCWGG	1 cut(s)	262
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	3 cut(s)	29, 192, 344
AluI	AGCT	3 cut(s)	29, 192, 344
Alw21I	GWGCWC	1 cut(s)	148
AoxI	GGCC	5 cut(s)	132, 258, 265, 348, 428
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	3 cut(s)	259, 266, 429
AsuC2I	CCSGG	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	182
BanI	GGYRCC	2 cut(s)	290, 437
Bbv12I	GWGCWC	1 cut(s)	148
BbvCI	CCTCAGC	1 cut(s)	345
BccI	CCATC	1 cut(s)	388
BciT130I	CCWGG	1 cut(s)	264
BcnI	CCSGG	1 cut(s)	120
BfaI	CTAG	2 cut(s)	210, 442
BfoI	RGCGCY	1 cut(s)	294
Bme1390I	CCNGG	2 cut(s)	120, 264
BmgT120I	GGNCC	3 cut(s)	259, 266, 429
BmiI	GGNNCC	3 cut(s)	261, 292, 439
BmrFI	CCNGG	2 cut(s)	120, 264
Bpu10I	CCTNAGC	1 cut(s)	345
BpuMI	CCSGG	1 cut(s)	120
BsaHI	GRCGYC	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	2 cut(s)	248, 420
Bse3DI	GCAATG	1 cut(s)	166
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	262
BseLI	CCNNNNNNNGG	2 cut(s)	248, 420
BseMI	GCAATG	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	336
BseYI	CCCAGC	1 cut(s)	25
BshFI	GGCC	5 cut(s)	134, 260, 267, 350, 430
BshNI	GGYRCC	2 cut(s)	290, 437
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	119
BslI	CCNNNNNNNGG	2 cut(s)	248, 420
BsnI	GGCC	5 cut(s)	134, 260, 267, 350, 430
Bsp1286I	GDGCHC	1 cut(s)	148
BspACI	CCGC	2 cut(s)	17, 362
BspANI	GGCC	5 cut(s)	134, 260, 267, 350, 430
BspCNI	CTCAG	1 cut(s)	337
BspLI	GGNNCC	3 cut(s)	261, 292, 439
BspT107I	GGYRCC	2 cut(s)	290, 437
BsrDI	GCAATG	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	262
BssNI	GRCGYC	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	44
BstACI	GRCGYC	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	1 cut(s)	345
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	293
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	1 cut(s)	264
BstSCI	CCNGG	2 cut(s)	118, 262
BsuRI	GGCC	5 cut(s)	134, 260, 267, 350, 430
BtsIMutI	CAGTG	1 cut(s)	49
Cac8I	GCNNGC	1 cut(s)	15
CfoI	GCGC	1 cut(s)	293
Cfr13I	GGNCC	3 cut(s)	259, 266, 429
CviAII	CATG	4 cut(s)	8, 34, 100, 359
DdeI	CTNAG	1 cut(s)	345
DinI	GGCGCC	1 cut(s)	292
EcoO109I	RGGNCCY	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	262
EgeI	GGCGCC	1 cut(s)	292
EheI	GGCGCC	1 cut(s)	292
FaeI	CATG	4 cut(s)	11, 37, 103, 362
FaiI	YATR	6 cut(s)	9, 35, 101, 168, 335, 360
FalI	AAGNNNNNCTT	2 cut(s)	148, 180
FatI	CATG	4 cut(s)	7, 33, 99, 358
FblI	GTMKAC	1 cut(s)	21
FspBI	CTAG	2 cut(s)	210, 442
GlaI	GCGC	1 cut(s)	292
GsaI	CCCAGC	1 cut(s)	29
HaeII	RGCGCY	1 cut(s)	294
HaeIII	GGCC	5 cut(s)	134, 260, 267, 350, 430
HapII	CCGG	1 cut(s)	119
HhaI	GCGC	1 cut(s)	293
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	4 cut(s)	11, 37, 103, 362
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HinfI	GANTC	1 cut(s)	407
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	3 cut(s)	277, 393, 406
Hpy8I	GTNNAC	1 cut(s)	22
HpyAV	CCTTC	2 cut(s)	208, 376
HpyCH4III	ACNGT	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	1 cut(s)	345
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	4 cut(s)	11, 37, 103, 362
HspAI	GCGC	1 cut(s)	291
KasI	GGCGCC	1 cut(s)	290
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	7 cut(s)	39, 77, 132, 195, 249, 276, 294
MaeI	CTAG	2 cut(s)	210, 442
MaeIII	GTNAC	1 cut(s)	251
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	2 cut(s)	201, 271
Mly113I	GGCGCC	1 cut(s)	291
MnlI	CCTC	3 cut(s)	340, 379, 421
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	2 cut(s)	120, 264
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	35
NarI	GGCGCC	1 cut(s)	291
NciI	CCSGG	1 cut(s)	120
NlaIII	CATG	4 cut(s)	11, 37, 103, 362
NlaIV	GGNNCC	3 cut(s)	261, 292, 439
NmuCI	GTSAC	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	407
PluTI	GGCGCC	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	3 cut(s)	261, 292, 439
PspPI	GGNCC	3 cut(s)	259, 266, 429
PvuII	CAGCTG	1 cut(s)	29
Sau96I	GGNCC	3 cut(s)	259, 266, 429
ScrFI	CCNGG	2 cut(s)	120, 264
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	5 cut(s)	31, 194, 346, 390, 443
SfoI	GGCGCC	1 cut(s)	292
Sse9I	AATT	2 cut(s)	201, 271
SsiI	CCGC	2 cut(s)	17, 362
SspDI	GGCGCC	1 cut(s)	290
SspMI	CTAG	2 cut(s)	210, 442
StyD4I	CCNGG	2 cut(s)	118, 262
TaaI	ACNGT	1 cut(s)	44
TaqII	GACCGA	1 cut(s)	298
TasI	AATT	2 cut(s)	201, 271
TfiI	GAWTC	1 cut(s)	407
TscAI	CASTG	1 cut(s)	49
TseFI	GTSAC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	1 cut(s)	40
TspRI	CASTG	1 cut(s)	49
XmiI	GTMKAC	1 cut(s)	21
XspI	CTAG	2 cut(s)	210, 442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.