Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002585

Physical Location & Seq

Genomic Coordinates Forward (+)

39463290 .. 39469009

Gene Structure 5720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG348600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGTCCAGCAAGCAATGCAATACATTGATCAGACACCAGATCTTGAAACTCGTATTGAGCTTATTAAAACACTAAATAATGTTTCTGCTGGAAAGATATATGTTGAAATTGAGAGAGCTCGGTTGATCAAAAGACTAGCAAAGATTAAGGAAGAGCAAGGCCTTATTGCTGAAGCTGCTGATCTGATGCAAGAAATTGCGGTGGAAACTTTTGGTGCTATGGCAAAAACTGAGAAGATTGCATTCATTCTTGAACAAGTTCGTCTGTGCTTGGACCGACAAGACTATGTTCGTGCTCAGATACTATCAAGGAAAATTAGTCCAAGAGCTTTTGATATTGATGCTTCAAAAGAAAAGAAAAAGCCTAAAGAAGGTGACGGTATTGTTGAAGAAGCTCCAGCTAATATACCATCGCTCCTAGAGTTGAAAAGGATCTACTACGAATTAATGATAAGGTATTATTCTCATAACAATGATTACCTTGAGATTAGCCGTTGCTATAAGGCGATATACGAGATTCCTTCTGTTAGAGAGAATCCAGCCCAGTGGATACCGGTCTTGAGGAAAATATGTTGGTACTTGGTTCTGTCTCCATACGATCCAATGCAGTCCAGCCTTCTCAATTCCACCTTGGACGATAAGAATCTTTCCGAAATCCCTTATTTTAGGTTGCTGTTGAAACAGGTGGTAACTATGGAGGTCATACAATGGACAACTCTTTGGAATACATACAAGGCTGAGTTTGAGAATGAGAAGAGCATGCTAGGAGGCTCTTTGGGTGACAAAGCAGCTGAAGATCTAAAGCAGAGAATAATTGAACATAACATTCTTGTTGTTTCAAAGTACTACTCAAGGATTACGTTGAAGAGACTTGCAGAGCTATTGTGTCTGAGTATCCAGGAAGCTGAGAAGCATCTCTCGGATATGGTTGTGTCTAAGGCACTGGTGGCCAAGATTGACAGACCAATAGGAATAGTCTGTTTCCAAACTTCAAAGGATAGCAACAATGTTCTTAATTCGTGGGCTATGAACTTGGAGAAACTACTTGATCTTGTTGAGAAAAGCTGCCATCAGATACACAAAGAAACCATGGTTCACAAGGCTGCTCTGAAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031595 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048856 GO:0051603 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

372

Amino Acids

42.9

Weight (kDa)

7.57

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSMD12-CSN4_N	PF22241	1 - 118	4.1e-45	PSMD12/CSN4, N-terminal
PSMD12-CSN4_N	PF22241	141 - 178	4.1e-08	PSMD12/CSN4, N-terminal
PCI	PF01399	263 - 329	6.9e-18	PCI domain
RPN5_C	PF18098	335 - 367	3.7e-10	26S proteasome regulatory subunit RPN5 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09900 AT5G09900 AT5G64760 AT5G64760 AT5G64760
fragaria_vesca	FvH4_1g23340 FvH4_1g23340 FvH4_1g23340 FvH4_1g23340 FvH4_1g23340 FvH4_5g27840
malus_domestica	MD02G1223100.v1.1 MD07G1091700.v1.1
prunus_persica	Prupe.2G117100_v2.0.a1 Prupe.2G119800_v2.0.a1
pyrus_communis	pycom07g07500
rosa_chinensis	RchiOBHm_Chr2g0118191 RchiOBHm_Chr7g0219741
rosa_laevigata	RLG00000002273 RLG00000018402
rosa_multiflora	Rmu_sc0001925.1_g000001 Rmu_sc0005014.1_g000001 Rmu_sc0007335.1_g000004
rosa_roxburghii	Rroxscaffold_2G00125830 Rroxscaffold_3G00239890
rosa_rugosa	Rorug02G0217200 Rorug07G0187400.1 Rorug07G0187500
rosa_samantha	Rh2AG273400 Rh2BG285600 Rh2DG281400 Rh2DG299400 Rh7AG331200 Rh7BG321000 Rh7CG348600 Rh7DG326700
rosa_wichuraiana	Rw2G021620 Rw2G021640 Rw2G021760 Rw7G027880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	200
AclWI	GGATC	2 cut(s)	440, 593
AcoI	YGGCCR	1 cut(s)	948
AcuI	CTGAAG	2 cut(s)	192, 813
AfaI	GTAC	2 cut(s)	578, 845
AfiI	CCNNNNNNNGG	1 cut(s)	371
AgeI	ACCGGT	1 cut(s)	553
AjnI	CCWGG	1 cut(s)	897
Alw21I	GWGCWC	2 cut(s)	121, 298
Alw26I	GTCTC	2 cut(s)	594, 862
AlwI	GGATC	2 cut(s)	440, 593
AoxI	GGCC	2 cut(s)	160, 948
ApeKI	GCWGC	4 cut(s)	176, 788, 1065, 1103
AseI	ATTAAT	1 cut(s)	446
AsiGI	ACCGGT	1 cut(s)	553
Asp700I	GAANNNNTTC	1 cut(s)	258
AspS9I	GGNCC	2 cut(s)	4, 274
AsuHPI	GGTGA	2 cut(s)	386, 791
AvaII	GGWCC	2 cut(s)	4, 274
BalI	TGGCCA	1 cut(s)	950
BanII	GRGCYC	1 cut(s)	121
Bbv12I	GWGCWC	2 cut(s)	121, 298
BbvI	GCAGC	4 cut(s)	163, 800, 1052, 1090
BccI	CCATC	2 cut(s)	418, 1077
BceAI	ACGGC	1 cut(s)	477
BciT130I	CCWGG	1 cut(s)	899
BciVI	GTATCC	2 cut(s)	543, 905
BclI	TGATCA	2 cut(s)	28, 126
BcoDI	GTCTC	2 cut(s)	594, 862
BfaI	CTAG	3 cut(s)	137, 419, 764
BfuI	GTATCC	2 cut(s)	543, 905
BglII	AGATCT	2 cut(s)	40, 796
BisI	GCNGC	4 cut(s)	177, 789, 1066, 1104
BlsI	GCNGC	4 cut(s)	178, 790, 1067, 1105
BmcAI	AGTACT	1 cut(s)	845
Bme1390I	CCNGG	1 cut(s)	899
Bme18I	GGWCC	2 cut(s)	4, 274
BmgT120I	GGNCC	2 cut(s)	4, 274
BmrFI	CCNGG	1 cut(s)	899
BmrI	ACTGGG	1 cut(s)	538
BmsI	GCATC	3 cut(s)	177, 331, 922
BmuI	ACTGGG	1 cut(s)	538
BpmI	CTGGAG	1 cut(s)	381
BpuEI	CTTGAG	3 cut(s)	503, 580, 835
BsaBI	GATNNNNATC	1 cut(s)	642
BsaJI	CCNNGG	2 cut(s)	630, 1089
BsaWI	WCCGGW	1 cut(s)	553
BsaXI	ACNNNNNCTCC	2 cut(s)	399, 429
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse118I	RCCGGY	1 cut(s)	553
Bse1I	ACTGG	2 cut(s)	544, 948
Bse3DI	GCAATG	1 cut(s)	21
Bse8I	GATNNNNATC	1 cut(s)	642
BseBI	CCWGG	1 cut(s)	899
BseDI	CCNNGG	2 cut(s)	630, 1089
BseJI	GATNNNNATC	1 cut(s)	642
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	5 cut(s)	222, 311, 729, 881, 897
BseNI	ACTGG	2 cut(s)	544, 948
BseXI	GCAGC	4 cut(s)	163, 800, 1052, 1090
BshFI	GGCC	2 cut(s)	162, 950
BshTI	ACCGGT	1 cut(s)	553
BsiHKAI	GWGCWC	2 cut(s)	121, 298
BsiSI	CCGG	1 cut(s)	554
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmAI	GTCTC	2 cut(s)	594, 862
BsmI	GAATGC	1 cut(s)	242
BsnI	GGCC	2 cut(s)	162, 950
Bsp1286I	GDGCHC	2 cut(s)	121, 298
Bsp143I	GATC	8 cut(s)	28, 40, 126, 181, 432, 598, 796, 1048
Bsp19I	CCATGG	1 cut(s)	1089
BspACI	CCGC	1 cut(s)	200
BspANI	GGCC	2 cut(s)	162, 950
BspCNI	CTCAG	5 cut(s)	223, 310, 730, 882, 898
BspPI	GGATC	2 cut(s)	440, 593
BspQI	GCTCTTC	2 cut(s)	147, 749
BsrDI	GCAATG	1 cut(s)	21
BsrFI	RCCGGY	1 cut(s)	553
BsrI	ACTGG	2 cut(s)	544, 948
BssAI	RCCGGY	1 cut(s)	553
BssECI	CCNNGG	2 cut(s)	630, 1089
BssMI	GATC	8 cut(s)	28, 40, 126, 181, 432, 598, 796, 1048
BssT1I	CCWWGG	2 cut(s)	630, 1089
Bst2UI	CCWGG	1 cut(s)	899
Bst4CI	ACNGT	1 cut(s)	380
Bst6I	CTCTTC	3 cut(s)	147, 749, 860
BstAPI	GCANNNNNTGC	1 cut(s)	16
BstC8I	GCNNGC	2 cut(s)	12, 761
BstDEI	CTNAG	6 cut(s)	231, 297, 738, 890, 906, 936
BstDSI	CCRYGG	1 cut(s)	1089
BstENI	CCTNNNNNAGG	1 cut(s)	369
BstKTI	GATC	8 cut(s)	31, 43, 129, 184, 435, 601, 799, 1051
BstMAI	GTCTC	2 cut(s)	594, 862
BstMBI	GATC	8 cut(s)	28, 40, 126, 181, 432, 598, 796, 1048
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 176, 947, 1112
BstNI	CCWGG	1 cut(s)	899
BstNSI	RCATGY	1 cut(s)	763
BstSCI	CCNGG	1 cut(s)	897
BstV1I	GCAGC	4 cut(s)	163, 800, 1052, 1090
BstX2I	RGATCY	3 cut(s)	40, 432, 796
BstXI	CCANNNNNNTGG	1 cut(s)	546
BstYI	RGATCY	3 cut(s)	40, 432, 796
BsuI	GTATCC	2 cut(s)	543, 905
BsuRI	GGCC	2 cut(s)	162, 950
BtgI	CCRYGG	1 cut(s)	1089
BtgZI	GCGATG	1 cut(s)	396
BtsIMutI	CAGTG	2 cut(s)	551, 941
Cac8I	GCNNGC	2 cut(s)	12, 761
Cfr10I	RCCGGY	1 cut(s)	553
Cfr13I	GGNCC	2 cut(s)	4, 274
Csp6I	GTAC	2 cut(s)	577, 844
CspAI	ACCGGT	1 cut(s)	553
CviAII	CATG	2 cut(s)	760, 1090
CviQI	GTAC	2 cut(s)	577, 844
DdeI	CTNAG	6 cut(s)	231, 297, 738, 890, 906, 936
DpnI	GATC	8 cut(s)	30, 42, 128, 183, 434, 600, 798, 1050
DpnII	GATC	8 cut(s)	28, 40, 126, 181, 432, 598, 796, 1048
EaeI	YGGCCR	1 cut(s)	948
Eam1104I	CTCTTC	3 cut(s)	147, 749, 860
EarI	CTCTTC	3 cut(s)	147, 749, 860
Ecl136II	GAGCTC	1 cut(s)	119
Eco130I	CCWWGG	2 cut(s)	630, 1089
Eco147I	AGGCCT	1 cut(s)	162
Eco24I	GRGCYC	1 cut(s)	121
Eco47I	GGWCC	2 cut(s)	4, 274
Eco53kI	GAGCTC	1 cut(s)	119
Eco57I	CTGAAG	2 cut(s)	192, 813
EcoICRI	GAGCTC	1 cut(s)	119
EcoNI	CCTNNNNNAGG	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	897
EcoT14I	CCWWGG	2 cut(s)	630, 1089
EcoT38I	GRGCYC	1 cut(s)	121
ErhI	CCWWGG	2 cut(s)	630, 1089
FaeI	CATG	2 cut(s)	763, 1093
FatI	CATG	2 cut(s)	759, 1089
FbaI	TGATCA	2 cut(s)	28, 126
Fnu4HI	GCNGC	4 cut(s)	177, 789, 1066, 1104
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	4 cut(s)	177, 789, 1066, 1104
FspBI	CTAG	3 cut(s)	137, 419, 764
GluI	GCNGC	4 cut(s)	177, 789, 1066, 1104
GsuI	CTGGAG	1 cut(s)	381
HaeIII	GGCC	2 cut(s)	162, 950
HapII	CCGG	1 cut(s)	554
Hin1II	CATG	2 cut(s)	763, 1093
HinfI	GANTC	3 cut(s)	517, 535, 643
HpaII	CCGG	1 cut(s)	554
HphI	GGTGA	2 cut(s)	386, 791
Hpy166II	GTNNAC	1 cut(s)	1096
Hpy188I	TCNGA	8 cut(s)	33, 186, 300, 652, 891, 922, 1074, 1110
Hpy188III	TCNNGA	3 cut(s)	44, 251, 559
Hpy8I	GTNNAC	1 cut(s)	1096
HpyAV	CCTTC	4 cut(s)	365, 531, 626, 1105
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4IV	ACGT	1 cut(s)	860
HpyCH4V	TGCA	5 cut(s)	19, 190, 242, 607, 875
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 176, 947, 1112
HpyF3I	CTNAG	6 cut(s)	231, 297, 738, 890, 906, 936
HpySE526I	ACGT	1 cut(s)	860
Hsp92II	CATG	2 cut(s)	763, 1093
Ksp22I	TGATCA	2 cut(s)	28, 126
Kzo9I	GATC	8 cut(s)	28, 40, 126, 181, 432, 598, 796, 1048
LguI	GCTCTTC	2 cut(s)	147, 749
LmnI	GCTCC	2 cut(s)	400, 420
Lsp1109I	GCAGC	4 cut(s)	163, 800, 1052, 1090
LweI	GCATC	3 cut(s)	177, 331, 922
MaeI	CTAG	3 cut(s)	137, 419, 764
MaeII	ACGT	1 cut(s)	860
MaeIII	GTNAC	3 cut(s)	374, 688, 779
MalI	GATC	8 cut(s)	30, 42, 128, 183, 434, 600, 798, 1050
MboI	GATC	8 cut(s)	28, 40, 126, 181, 432, 598, 796, 1048
MboII	GAAGA	6 cut(s)	164, 247, 401, 766, 806, 877
MflI	RGATCY	3 cut(s)	40, 432, 796
MhlI	GDGCHC	2 cut(s)	121, 298
MlsI	TGGCCA	1 cut(s)	950
MluCI	AATT	7 cut(s)	108, 195, 315, 443, 622, 813, 1015
MluNI	TGGCCA	1 cut(s)	950
MnlI	CCTC	3 cut(s)	555, 691, 761
Mox20I	TGGCCA	1 cut(s)	950
MroXI	GAANNNNTTC	1 cut(s)	258
MscI	TGGCCA	1 cut(s)	950
MseI	TTAA	5 cut(s)	66, 147, 446, 1014, 1117
MslI	CAYNNNNRTG	1 cut(s)	471
Msp20I	TGGCCA	1 cut(s)	950
MspA1I	CMGCKG	1 cut(s)	791
MspI	CCGG	1 cut(s)	554
MspR9I	CCNGG	1 cut(s)	899
Mva1269I	GAATGC	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	899
MwoI	GCNNNNNNNGC	4 cut(s)	16, 176, 947, 1112
NcoI	CCATGG	1 cut(s)	1089
NdeII	GATC	8 cut(s)	28, 40, 126, 181, 432, 598, 796, 1048
NlaIII	CATG	2 cut(s)	763, 1093
NmuCI	GTSAC	2 cut(s)	374, 779
NspI	RCATGY	1 cut(s)	763
PaeI	GCATGC	1 cut(s)	763
PceI	AGGCCT	1 cut(s)	162
PciSI	GCTCTTC	2 cut(s)	147, 749
PctI	GAATGC	1 cut(s)	242
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	3 cut(s)	517, 535, 643
PfoI	TCCNGGA	1 cut(s)	897
PinAI	ACCGGT	1 cut(s)	553
PkrI	GCNGC	4 cut(s)	178, 790, 1067, 1105
PshBI	ATTAAT	1 cut(s)	446
Psp124BI	GAGCTC	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	897
PspGI	CCWGG	1 cut(s)	897
PspPI	GGNCC	2 cut(s)	4, 274
PsuI	RGATCY	3 cut(s)	40, 432, 796
PvuII	CAGCTG	1 cut(s)	791
RsaI	GTAC	2 cut(s)	578, 845
RsaNI	GTAC	2 cut(s)	577, 844
RseI	CAYNNNNRTG	1 cut(s)	471
SacI	GAGCTC	1 cut(s)	121
SapI	GCTCTTC	2 cut(s)	147, 749
SaqAI	TTAA	5 cut(s)	66, 147, 446, 1014, 1117
SatI	GCNGC	4 cut(s)	177, 789, 1066, 1104
Sau3AI	GATC	8 cut(s)	28, 40, 126, 181, 432, 598, 796, 1048
Sau96I	GGNCC	2 cut(s)	4, 274
ScaI	AGTACT	1 cut(s)	845
ScrFI	CCNGG	1 cut(s)	899
SduI	GDGCHC	2 cut(s)	121, 298
SfaNI	GCATC	3 cut(s)	177, 331, 922
SinI	GGWCC	2 cut(s)	4, 274
SmiMI	CAYNNNNRTG	1 cut(s)	471
SmlI	CTYRAG	3 cut(s)	482, 559, 850
SmoI	CTYRAG	3 cut(s)	482, 559, 850
SphI	GCATGC	1 cut(s)	763
Sse9I	AATT	7 cut(s)	108, 195, 315, 443, 622, 813, 1015
SseBI	AGGCCT	1 cut(s)	162
SsiI	CCGC	1 cut(s)	200
SspMI	CTAG	3 cut(s)	137, 419, 764
SstI	GAGCTC	1 cut(s)	121
StuI	AGGCCT	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	897
StyI	CCWWGG	2 cut(s)	630, 1089
TaaI	ACNGT	1 cut(s)	380
TaiI	ACGT	1 cut(s)	863
TaqII	GACCGA	1 cut(s)	291
TasI	AATT	7 cut(s)	108, 195, 315, 443, 622, 813, 1015
TatI	WGTACW	1 cut(s)	843
TfiI	GAWTC	3 cut(s)	517, 535, 643
Tru1I	TTAA	5 cut(s)	66, 147, 446, 1014, 1117
Tru9I	TTAA	5 cut(s)	66, 147, 446, 1014, 1117
TscAI	CASTG	2 cut(s)	551, 948
TseFI	GTSAC	2 cut(s)	374, 779
TseI	GCWGC	4 cut(s)	176, 788, 1065, 1103
Tsp45I	GTSAC	2 cut(s)	374, 779
TspDTI	ATGAA	2 cut(s)	235, 1043
TspRI	CASTG	2 cut(s)	551, 948
VpaK11BI	GGWCC	2 cut(s)	4, 274
VspI	ATTAAT	1 cut(s)	446
XagI	CCTNNNNNAGG	1 cut(s)	369
XceI	RCATGY	1 cut(s)	763
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	3 cut(s)	137, 419, 764
ZrmI	AGTACT	1 cut(s)	845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.