Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002585

Physical Location & Seq

Genomic Coordinates Reverse (-)

15851499 .. 15855723

Gene Structure 4225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0187500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGCTAGTTCAGCTCCACCTCCTTCCTATTTTTCTTCTTCCTCCCAAAACCCCAAACTTCACTCCCCTTCGTTCATTCAACAACAACAACAACAAAACCCTTATTTCTGTAAACCCTAAATCAAGCTTCCGAATTAGAGCTTCCACCTCCAGCGATAATAGCCAACCGCCGTGGTGGGCGAACCTGTTGCCCGCCCAAGCTTTGGGATCCGATAAAGTTCTCAGATTGATCTCCGGTGCCACCGCTAGCCCCATTGGCCAGTACGTGTCGGAACCCGTCACTTTTCTTCATTCTCTCGACCCCAGAGTCAAATTGGAACTTGACCATGTTCATCACATGGAACTGATGCATGATCGCGTTTTAAAATATCCAGATCGTGTTCAGAATTTGTACTTCGCATTCCTCTTTGTTCTCCGGGCAGTGACAAGAGCTGCAGATTACTTAGAGCAGGCTGAGTATGATACAGGTAATCATGAGGAAGACCTTAGAACAGAGTCTTTGATGAGGCAGCTACTTTACAATCCTCAACTCCAAGCTACATGTCCCCTACCGTTTGATGAAGCAAAGCTCTGGAATAGTCAGAGCGGACCACAATTGAAGCAAAAAATTCAAAAGAAATTCAGAAACATCAGTGCATTAATGGATTGTGTGGGATGTGAGAAATGTCGGCTCTGGGGAAAGCTTCAAGTTCTTGGTCTTGGTACTGCATTGAAGATCCTCTTTTCTGTGGATGGTAAAAATCATCAAGATCAACTTGGTATGTGTTTTGAATTGGGGTTTGAGGAGGTTGGAATGAAAAAGGTGTATGTCCAGAACTACAGGGAAAAGGAGAAGTTGGAGCATAGGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031595 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048856 GO:0051603 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

283

Amino Acids

32.48

Weight (kDa)

8.87

Isoelectric Point (pI)

36.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ERO1	PF04137	72 - 250	3.8e-50	Endoplasmic Reticulum Oxidoreductin 1 (ERO1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09900 AT5G09900 AT5G64760 AT5G64760 AT5G64760
fragaria_vesca	FvH4_1g23340 FvH4_1g23340 FvH4_1g23340 FvH4_1g23340 FvH4_1g23340 FvH4_5g27840
malus_domestica	MD02G1223100.v1.1 MD07G1091700.v1.1
prunus_persica	Prupe.2G117100_v2.0.a1 Prupe.2G119800_v2.0.a1
pyrus_communis	pycom07g07500
rosa_chinensis	RchiOBHm_Chr2g0118191 RchiOBHm_Chr7g0219741
rosa_laevigata	RLG00000002273 RLG00000018402
rosa_multiflora	Rmu_sc0001925.1_g000001 Rmu_sc0005014.1_g000001 Rmu_sc0007335.1_g000004
rosa_roxburghii	Rroxscaffold_2G00125830 Rroxscaffold_3G00239890
rosa_rugosa	Rorug02G0217200 Rorug07G0187400.1 Rorug07G0187500
rosa_samantha	Rh2AG273400 Rh2BG285600 Rh2DG281400 Rh2DG299400 Rh7AG331200 Rh7BG321000 Rh7CG348600 Rh7DG326700
rosa_wichuraiana	Rw2G021620 Rw2G021640 Rw2G021760 Rw7G027880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	305
AccB1I	GGYRCC	1 cut(s)	236
AccB7I	CCANNNNNTGG	1 cut(s)	202
AccBSI	CCGCTC	1 cut(s)	585
AccII	CGCG	1 cut(s)	357
AciI	CCGC	4 cut(s)	167, 192, 243, 585
AclWI	GGATC	3 cut(s)	201, 214, 709
AcoI	YGGCCR	1 cut(s)	256
AcsI	RAATTY	3 cut(s)	385, 606, 617
AfaI	GTAC	3 cut(s)	263, 392, 703
AfiI	CCNNNNNNNGG	1 cut(s)	202
AflIII	ACRYGT	2 cut(s)	264, 539
AgsI	TTSAA	6 cut(s)	79, 598, 611, 686, 712, 770
AluBI	AGCT	9 cut(s)	13, 126, 140, 200, 431, 511, 536, 568, 682
AluI	AGCT	9 cut(s)	13, 126, 140, 200, 431, 511, 536, 568, 682
AlwI	GGATC	3 cut(s)	201, 214, 709
AoxI	GGCC	1 cut(s)	256
ApeKI	GCWGC	2 cut(s)	431, 508
ApoI	RAATTY	3 cut(s)	385, 606, 617
AseI	ATTAAT	1 cut(s)	638
AspS9I	GGNCC	1 cut(s)	587
AsuC2I	CCSGG	1 cut(s)	416
AsuNHI	GCTAGC	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	587
BalI	TGGCCA	1 cut(s)	258
BamHI	GGATCC	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	486
BbvI	GCAGC	2 cut(s)	418, 520
BccI	CCATC	1 cut(s)	725
BceAI	ACGGC	1 cut(s)	154
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BcnI	CCSGG	1 cut(s)	416
BfaI	CTAG	2 cut(s)	5, 246
BfmI	CTRYAG	2 cut(s)	432, 817
BglI	GCCNNNNNGGC	1 cut(s)	255
BisI	GCNGC	2 cut(s)	432, 509
BlsI	GCNGC	2 cut(s)	433, 510
Bme1390I	CCNGG	1 cut(s)	416
Bme18I	GGWCC	1 cut(s)	587
BmgT120I	GGNCC	1 cut(s)	587
BmiI	GGNNCC	3 cut(s)	208, 238, 273
BmrFI	CCNGG	1 cut(s)	416
BmsI	GCATC	1 cut(s)	336
BmtI	GCTAGC	1 cut(s)	249
BpiI	GAAGAC	1 cut(s)	486
BpmI	CTGGAG	1 cut(s)	133
BpuMI	CCSGG	1 cut(s)	416
BsaAI	YACGTR	1 cut(s)	265
BsaJI	CCNNGG	1 cut(s)	170
BsaWI	WCCGGW	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	259
BseDI	CCNNGG	1 cut(s)	170
BseGI	GGATG	2 cut(s)	659, 736
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMII	CTCAG	2 cut(s)	235, 444
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	1 cut(s)	797
BseXI	GCAGC	2 cut(s)	418, 520
Bsh1236I	CGCG	1 cut(s)	357
BshFI	GGCC	1 cut(s)	258
BshNI	GGYRCC	1 cut(s)	236
BsiSI	CCGG	2 cut(s)	234, 415
BslFI	GGGAC	1 cut(s)	528
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	528
BsmI	GAATGC	1 cut(s)	398
BsnI	GGCC	1 cut(s)	258
Bsp143I	GATC	6 cut(s)	206, 228, 352, 373, 714, 748
BspACI	CCGC	4 cut(s)	167, 192, 243, 585
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	2 cut(s)	234, 445
BspFNI	CGCG	1 cut(s)	357
BspHI	TCATGA	1 cut(s)	472
BspLI	GGNNCC	3 cut(s)	208, 238, 273
BspMAI	CTGCAG	1 cut(s)	436
BspOI	GCTAGC	1 cut(s)	249
BspPI	GGATC	3 cut(s)	201, 214, 709
BspT107I	GGYRCC	1 cut(s)	236
BsrBI	CCGCTC	1 cut(s)	585
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	6 cut(s)	206, 228, 352, 373, 714, 748
Bst4CI	ACNGT	1 cut(s)	552
BstBAI	YACGTR	1 cut(s)	265
BstC8I	GCNNGC	3 cut(s)	192, 247, 450
BstDEI	CTNAG	4 cut(s)	221, 442, 453, 485
BstDSI	CCRYGG	1 cut(s)	170
BstF5I	GGATG	2 cut(s)	659, 736
BstFNI	CGCG	1 cut(s)	357
BstKTI	GATC	6 cut(s)	209, 231, 355, 376, 717, 751
BstMBI	GATC	6 cut(s)	206, 228, 352, 373, 714, 748
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 159, 255
BstNSI	RCATGY	1 cut(s)	543
BstSCI	CCNGG	1 cut(s)	414
BstSFI	CTRYAG	2 cut(s)	432, 817
BstUI	CGCG	1 cut(s)	357
BstV1I	GCAGC	2 cut(s)	418, 520
BstV2I	GAAGAC	1 cut(s)	486
BstX2I	RGATCY	2 cut(s)	206, 714
BstYI	RGATCY	2 cut(s)	206, 714
BsuRI	GGCC	1 cut(s)	258
BtgI	CCRYGG	1 cut(s)	170
BtsCI	GGATG	2 cut(s)	659, 736
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	2 cut(s)	426, 637
Cac8I	GCNNGC	3 cut(s)	192, 247, 450
CciI	TCATGA	1 cut(s)	472
Cfr13I	GGNCC	1 cut(s)	587
Csp6I	GTAC	3 cut(s)	262, 391, 702
CspCI	CAANNNNNGTGG	2 cut(s)	152, 187
CviAII	CATG	5 cut(s)	326, 337, 350, 473, 540
CviQI	GTAC	3 cut(s)	262, 391, 702
DdeI	CTNAG	4 cut(s)	221, 442, 453, 485
DpnI	GATC	6 cut(s)	208, 230, 354, 375, 716, 750
DpnII	GATC	6 cut(s)	206, 228, 352, 373, 714, 748
DraI	TTTAAA	1 cut(s)	363
DrdI	GACNNNNNNGTC	1 cut(s)	305
DseDI	GACNNNNNNGTC	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	587
EcoT22I	ATGCAT	1 cut(s)	351
FaeI	CATG	5 cut(s)	329, 340, 353, 476, 543
FaiI	YATR	9 cut(s)	327, 338, 351, 459, 474, 541, 761, 807, 843
FalI	AAGNNNNNCTT	4 cut(s)	704, 736, 738, 770
FaqI	GGGAC	1 cut(s)	528
FatI	CATG	5 cut(s)	325, 336, 349, 472, 539
FauI	CCCGC	1 cut(s)	199
Fnu4HI	GCNGC	2 cut(s)	432, 509
FokI	GGATG	2 cut(s)	666, 743
Fsp4HI	GCNGC	2 cut(s)	432, 509
FspBI	CTAG	2 cut(s)	5, 246
GluI	GCNGC	2 cut(s)	432, 509
GsuI	CTGGAG	1 cut(s)	133
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	2 cut(s)	234, 415
Hin1II	CATG	5 cut(s)	329, 340, 353, 476, 543
HindIII	AAGCTT	3 cut(s)	124, 198, 680
HinfI	GANTC	2 cut(s)	306, 494
HpaII	CCGG	2 cut(s)	234, 415
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	7 cut(s)	131, 211, 224, 271, 384, 582, 623
Hpy188III	TCNNGA	6 cut(s)	296, 371, 473, 571, 746, 811
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	2 cut(s)	32, 77
HpyCH4III	ACNGT	1 cut(s)	552
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	4 cut(s)	349, 434, 635, 707
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 159, 255
HpyF3I	CTNAG	4 cut(s)	221, 442, 453, 485
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	5 cut(s)	329, 340, 353, 476, 543
Kzo9I	GATC	6 cut(s)	206, 228, 352, 373, 714, 748
LmnI	GCTCC	2 cut(s)	18, 838
Lsp1109I	GCAGC	2 cut(s)	418, 520
LweI	GCATC	1 cut(s)	336
MaeI	CTAG	2 cut(s)	5, 246
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	2 cut(s)	277, 421
MalI	GATC	6 cut(s)	208, 230, 354, 375, 716, 750
MbiI	CCGCTC	1 cut(s)	585
MboI	GATC	6 cut(s)	206, 228, 352, 373, 714, 748
MboII	GAAGA	5 cut(s)	26, 29, 278, 491, 724
MfeI	CAATTG	1 cut(s)	593
MflI	RGATCY	2 cut(s)	206, 714
MlsI	TGGCCA	1 cut(s)	258
MluCI	AATT	7 cut(s)	132, 311, 385, 593, 606, 617, 770
MluNI	TGGCCA	1 cut(s)	258
MlyI	GAGTC	2 cut(s)	315, 503
MmeI	TCCRAC	3 cut(s)	249, 769, 816
Mox20I	TGGCCA	1 cut(s)	258
Mph1103I	ATGCAT	1 cut(s)	351
MscI	TGGCCA	1 cut(s)	258
MseI	TTAA	2 cut(s)	362, 638
Msp20I	TGGCCA	1 cut(s)	258
MspI	CCGG	2 cut(s)	234, 415
MspR9I	CCNGG	1 cut(s)	416
MunI	CAATTG	1 cut(s)	593
Mva1269I	GAATGC	1 cut(s)	398
MvnI	CGCG	1 cut(s)	357
MwoI	GCNNNNNNNGC	3 cut(s)	10, 159, 255
NciI	CCSGG	1 cut(s)	416
NdeII	GATC	6 cut(s)	206, 228, 352, 373, 714, 748
NheI	GCTAGC	1 cut(s)	245
NlaIII	CATG	5 cut(s)	329, 340, 353, 476, 543
NlaIV	GGNNCC	3 cut(s)	208, 238, 273
NmuCI	GTSAC	2 cut(s)	277, 421
NsiI	ATGCAT	1 cut(s)	351
NspI	RCATGY	1 cut(s)	543
PagI	TCATGA	1 cut(s)	472
PciI	ACATGT	1 cut(s)	539
PctI	GAATGC	1 cut(s)	398
PflMI	CCANNNNNTGG	1 cut(s)	202
PkrI	GCNGC	2 cut(s)	433, 510
PleI	GAGTC	2 cut(s)	314, 502
PpsI	GAGTC	2 cut(s)	314, 502
Ppu21I	YACGTR	1 cut(s)	265
PscI	ACATGT	1 cut(s)	539
PshBI	ATTAAT	1 cut(s)	638
PspN4I	GGNNCC	3 cut(s)	208, 238, 273
PspPI	GGNCC	1 cut(s)	587
PstI	CTGCAG	1 cut(s)	436
PsuI	RGATCY	2 cut(s)	206, 714
RsaI	GTAC	3 cut(s)	263, 392, 703
RsaNI	GTAC	3 cut(s)	262, 391, 702
SaqAI	TTAA	2 cut(s)	362, 638
SatI	GCNGC	2 cut(s)	432, 509
Sau3AI	GATC	6 cut(s)	206, 228, 352, 373, 714, 748
Sau96I	GGNCC	1 cut(s)	587
SchI	GAGTC	2 cut(s)	315, 503
ScrFI	CCNGG	1 cut(s)	416
SfaNI	GCATC	1 cut(s)	336
SfcI	CTRYAG	2 cut(s)	432, 817
SinI	GGWCC	1 cut(s)	587
Sse9I	AATT	7 cut(s)	132, 311, 385, 593, 606, 617, 770
SsiI	CCGC	4 cut(s)	167, 192, 243, 585
SspMI	CTAG	2 cut(s)	5, 246
StyD4I	CCNGG	1 cut(s)	414
TaaI	ACNGT	1 cut(s)	552
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	1 cut(s)	297
TasI	AATT	7 cut(s)	132, 311, 385, 593, 606, 617, 770
TatI	WGTACW	1 cut(s)	390
Tru1I	TTAA	2 cut(s)	362, 638
Tru9I	TTAA	2 cut(s)	362, 638
TscAI	CASTG	2 cut(s)	426, 637
TseFI	GTSAC	2 cut(s)	277, 421
TseI	GCWGC	2 cut(s)	431, 508
Tsp45I	GTSAC	2 cut(s)	277, 421
TspDTI	ATGAA	5 cut(s)	63, 278, 320, 573, 809
TspRI	CASTG	2 cut(s)	426, 637
Van91I	CCANNNNNTGG	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	587
VspI	ATTAAT	1 cut(s)	638
XapI	RAATTY	3 cut(s)	385, 606, 617
XceI	RCATGY	1 cut(s)	543
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XspI	CTAG	2 cut(s)	5, 246
Zsp2I	ATGCAT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.