AT5G10060

RPR

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
3145749 .. 3148400
2652 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G10060.1

Sequence Viewer

Length: 1410 bp
ATGAGTAGTGTGTTCAGTGATCAGATCCTGATTGATAAGCTCGCTAAGCTCAATAGCAGTCAACAGTCTATCGAAACTCTGTCACATTGGTGTATATTCAATCGGAGCAAAGCAGAATTGATCGTTACGACATGGGAGAAACAGTTTCACAGTACAGAGATGGATCAGAAAGTCCCTCTTTTGTATTTGGCTAATGATATTCTTCAGAACAGTAAGCGTCAAGGTAATGAGTTTGTGCAAGAGTTCTGGAATGTTCTTCCTAAGGCTCTTAAAGACATTGTTTCTCAAGGAGATGATAATGGCAAAAGCGCTGTCGCACGTGTGATCAAGATATGGGAAGAAAGAAGAGTGTTTGGATCACGTTCAAAGAGTCTTAAAGATGTAATGCTTGGAGAAGATGTTCCTCTGCCACTTGATATCAGCAAAAAGCGGCCTCGCGGATCCAAATCTTCAAAACGGGAGTCAAAATCGTCCAGAACGAAATTAGCATCAAGTGGTGGTGTGGCTGAGAAGATAGCATCAGCATATCATTTGGTTGTTGCAGAAAACTCAAATGAAGAAGCTGAGATGAATAAATGTAAGTCTGCAGTTAAACGAATCCGGAAGATGGAGAAAGATGTTGAAGAAGCCTGCTCTACTGCAAAAGACAACCCGAAGAGAAAATCTTTGGCGAAAGAATTGGAAGAAGAAGAATACCTTTTGAGACAATGTATTGAGAAACTTAAATCTGTTCAAGGAAGTAGAAGTTCCCTTGTGAACCAGCTTAAAGATGCACTACGTGAACAGGAATCCGAACTGGACAATCTTAAAGCTCAGATTCAGGTAGCTAAAGAACAAACAGAGGAAGCCCAAAACATGCAGAAACGGCTTAATGATGAGGATTACACATCAAAACAAACAACTGCTGCCACTACGATAACCGAGACAAATGACAACACCAAATCTGGTCAAGCATCAAAAATGACGCCTGCATCTATTGCTGCAATGCTCACAGCGTCAACCTCATCACATATGATAATGCAGTCTGTTCTATCTTCATTCGCAGCTGAAGCAACAAAGACTTCTGGTCTATCCAAATCAGAGAGCACAGTTCCGGTCTCAGACACTAATGCTTCATTCCCTTCTTACAACAACTCCCAGAATCAGACACCTACCACACAAGGTCAGTACCATGTAATACCTAATCCACCACCACCACAGTTCCTAAAACCACCGGTAATGAATAACCCTTACGCCTTTGGCAACATTCCGTTAATGCCACCTGGGCTTCCGCCACCACCACCACCACCACATTTGATAGGTAATCAACAGCCTCAAATTCCTCAGTCGAACTCAGCTCAGCAATCTCAACAAGGTCCAACTTTCCAGCCACCAGGGATAATGTATTACGGAGCTCCACACCATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

469

Amino Acids

51.95

Weight (kDa)

8.75

Isoelectric Point (pI)

57.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CID PF04818 9 - 120 3e-37 CID domain
CTK3 PF12243 11 - 117 1.8e-07 CTD kinase subunit gamma CTK3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 438
AccIII TCCGGA 1 cut(s) 600
AciI CCGC 3 cut(s) 430, 438, 1271
AclWI GGATC 5 cut(s) 19, 171, 364, 435, 448
AcsI RAATTY 1 cut(s) 1317
AcuI CTGAAG 2 cut(s) 188, 1068
AcvI CACGTG 1 cut(s) 320
AcyI GRCGYC 1 cut(s) 965
AdeI CACNNNGTG 1 cut(s) 779
AfaI GTAC 2 cut(s) 154, 1169
AfeI AGCGCT 1 cut(s) 310
AfiI CCNNNNNNNGG 1 cut(s) 607
AflIII ACRYGT 1 cut(s) 319
AgeI ACCGGT 1 cut(s) 1213
AgsI TTSAA 5 cut(s) 100, 366, 453, 623, 734
AhdI GACNNNNNGTC 1 cut(s) 1065
AjnI CCWGG 2 cut(s) 1261, 1372
AleI CACNNNNGTG 1 cut(s) 88
AloI GAACNNNNNNTCC 2 cut(s) 384, 416
AluBI AGCT 9 cut(s) 40, 49, 563, 763, 812, 827, 1046, 1337, 1394
AluI AGCT 9 cut(s) 40, 49, 563, 763, 812, 827, 1046, 1337, 1394
Alw21I GWGCWC 2 cut(s) 1088, 1396
Alw26I GTCTC 3 cut(s) 697, 917, 1102
AlwI GGATC 5 cut(s) 19, 171, 364, 435, 448
AlwNI CAGNNNCTG 1 cut(s) 28
Aor13HI TCCGGA 1 cut(s) 600
Aor51HI AGCGCT 1 cut(s) 310
AoxI GGCC 1 cut(s) 431
ApeKI GCWGC 3 cut(s) 905, 980, 1043
ApoI RAATTY 1 cut(s) 1317
ArsI GACNNNNNNTTYG 4 cut(s) 297, 329, 446, 478
AsiGI ACCGGT 1 cut(s) 1213
Asp700I GAANNNNTTC 1 cut(s) 399
AspLEI GCGC 1 cut(s) 311
AspS9I GGNCC 1 cut(s) 1355
AvaII GGWCC 1 cut(s) 1355
AxyI CCTNAGG 1 cut(s) 261
BamHI GGATCC 1 cut(s) 440
BanII GRGCYC 1 cut(s) 1396
BbrPI CACGTG 1 cut(s) 320
Bbv12I GWGCWC 2 cut(s) 1088, 1396
BbvI GCAGC 3 cut(s) 892, 967, 1055
BccI CCATC 2 cut(s) 154, 601
BceAI ACGGC 1 cut(s) 881
BciT130I CCWGG 2 cut(s) 1263, 1374
BclI TGATCA 2 cut(s) 19, 324
BcoDI GTCTC 3 cut(s) 697, 917, 1102
BfmI CTRYAG 1 cut(s) 585
BfoI RGCGCY 1 cut(s) 312
BglI GCCNNNNNGGC 1 cut(s) 1264
BisI GCNGC 4 cut(s) 431, 906, 981, 1044
BlpI GCTNAGC 2 cut(s) 45, 1338
BlsI GCNGC 4 cut(s) 432, 907, 982, 1045
Bme1390I CCNGG 2 cut(s) 1263, 1374
Bme18I GGWCC 1 cut(s) 1355
BmeRI GACNNNNNGTC 1 cut(s) 1065
BmgT120I GGNCC 1 cut(s) 1355
BmiI GGNNCC 1 cut(s) 442
BmrFI CCNGG 2 cut(s) 1263, 1374
BmsI GCATC 5 cut(s) 497, 527, 760, 962, 980
Bpu1102I GCTNAGC 2 cut(s) 45, 1338
BpuEI CTTGAG 1 cut(s) 270
BsaAI YACGTR 2 cut(s) 320, 779
BsaBI GATNNNNATC 1 cut(s) 445
BsaHI GRCGYC 1 cut(s) 965
BsaI GGTCTC 1 cut(s) 1102
BsaJI CCNNGG 2 cut(s) 1262, 1373
BsaWI WCCGGW 3 cut(s) 600, 1093, 1213
BsaXI ACNNNNNCTCC 6 cut(s) 128, 158, 384, 414, 1118, 1148
Bsc4I CCNNNNNNNGG 1 cut(s) 607
Bse118I RCCGGY 1 cut(s) 1213
Bse1I ACTGG 1 cut(s) 801
Bse21I CCTNAGG 1 cut(s) 261
Bse3DI GCAATG 1 cut(s) 990
Bse8I GATNNNNATC 1 cut(s) 445
BseAI TCCGGA 1 cut(s) 600
BseBI CCWGG 2 cut(s) 1263, 1374
BseDI CCNNGG 2 cut(s) 1262, 1373
BseJI GATNNNNATC 1 cut(s) 445
BseLI CCNNNNNNNGG 1 cut(s) 607
BseMI GCAATG 1 cut(s) 990
BseMII CTCAG 7 cut(s) 498, 555, 827, 1113, 1337, 1347, 1352
BseNI ACTGG 1 cut(s) 801
BseXI GCAGC 3 cut(s) 892, 967, 1055
Bsh1236I CGCG 1 cut(s) 438
BshFI GGCC 1 cut(s) 433
BshTI ACCGGT 1 cut(s) 1213
BsiHKAI GWGCWC 2 cut(s) 1088, 1396
BsiSI CCGG 3 cut(s) 601, 1094, 1214
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 607
BsmAI GTCTC 3 cut(s) 697, 917, 1102
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 1 cut(s) 433
Bso31I GGTCTC 1 cut(s) 1102
Bsp1286I GDGCHC 2 cut(s) 1088, 1396
Bsp13I TCCGGA 1 cut(s) 600
Bsp143I GATC 7 cut(s) 19, 24, 120, 163, 324, 356, 440
Bsp1720I GCTNAGC 2 cut(s) 45, 1338
BspACI CCGC 3 cut(s) 430, 438, 1271
BspANI GGCC 1 cut(s) 433
BspCNI CTCAG 7 cut(s) 499, 556, 826, 1112, 1336, 1346, 1351
BspEI TCCGGA 1 cut(s) 600
BspFNI CGCG 1 cut(s) 438
BspLI GGNNCC 1 cut(s) 442
BspMAI CTGCAG 1 cut(s) 589
BspPI GGATC 5 cut(s) 19, 171, 364, 435, 448
BspTNI GGTCTC 1 cut(s) 1102
BsrDI GCAATG 1 cut(s) 990
BsrFI RCCGGY 1 cut(s) 1213
BsrI ACTGG 1 cut(s) 801
BssAI RCCGGY 1 cut(s) 1213
BssECI CCNNGG 2 cut(s) 1262, 1373
BssMI GATC 7 cut(s) 19, 24, 120, 163, 324, 356, 440
BssNI GRCGYC 1 cut(s) 965
Bst2UI CCWGG 2 cut(s) 1263, 1374
Bst4CI ACNGT 6 cut(s) 66, 144, 152, 212, 1090, 1200
Bst6I CTCTTC 2 cut(s) 340, 650
BstACI GRCGYC 1 cut(s) 965
BstAPI GCANNNNNTGC 1 cut(s) 977
BstBAI YACGTR 2 cut(s) 320, 779
BstC8I GCNNGC 3 cut(s) 42, 631, 969
BstDEI CTNAG 9 cut(s) 45, 261, 507, 564, 813, 1099, 1323, 1333, 1338
BstFNI CGCG 1 cut(s) 438
BstH2I RGCGCY 1 cut(s) 312
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 7 cut(s) 22, 27, 123, 166, 327, 359, 443
BstMAI GTCTC 3 cut(s) 697, 917, 1102
BstMBI GATC 7 cut(s) 19, 24, 120, 163, 324, 356, 440
BstMWI GCNNNNNNNGC 5 cut(s) 46, 865, 977, 1049, 1264
BstNI CCWGG 2 cut(s) 1263, 1374
BstNSI RCATGY 1 cut(s) 859
BstSCI CCNGG 2 cut(s) 1261, 1372
BstSFI CTRYAG 1 cut(s) 585
BstUI CGCG 1 cut(s) 438
BstV1I GCAGC 3 cut(s) 892, 967, 1055
BstX2I RGATCY 2 cut(s) 24, 440
BstYI RGATCY 2 cut(s) 24, 440
Bsu36I CCTNAGG 1 cut(s) 261
BsuRI GGCC 1 cut(s) 433
BtsIMutI CAGTG 1 cut(s) 22
Cac8I GCNNGC 3 cut(s) 42, 631, 969
CaiI CAGNNNCTG 1 cut(s) 28
CfoI GCGC 1 cut(s) 311
Cfr10I RCCGGY 1 cut(s) 1213
Cfr13I GGNCC 1 cut(s) 1355
CseI GACGC 3 cut(s) 206, 973, 984
Csp6I GTAC 2 cut(s) 153, 1168
CspAI ACCGGT 1 cut(s) 1213
CspCI CAANNNNNGTGG 2 cut(s) 1275, 1310
CviAII CATG 3 cut(s) 132, 856, 1172
CviQI GTAC 2 cut(s) 153, 1168
DdeI CTNAG 9 cut(s) 45, 261, 507, 564, 813, 1099, 1323, 1333, 1338
DpnI GATC 7 cut(s) 21, 26, 122, 165, 326, 358, 442
DpnII GATC 7 cut(s) 19, 24, 120, 163, 324, 356, 440
DraIII CACNNNGTG 1 cut(s) 779
DriI GACNNNNNGTC 1 cut(s) 1065
Eam1104I CTCTTC 2 cut(s) 340, 650
Eam1105I GACNNNNNGTC 1 cut(s) 1065
EarI CTCTTC 2 cut(s) 340, 650
EciI GGCGGA 1 cut(s) 1260
Ecl136II GAGCTC 1 cut(s) 1394
Eco24I GRGCYC 1 cut(s) 1396
Eco31I GGTCTC 1 cut(s) 1102
Eco32I GATATC 1 cut(s) 418
Eco47I GGWCC 1 cut(s) 1355
Eco47III AGCGCT 1 cut(s) 310
Eco53kI GAGCTC 1 cut(s) 1394
Eco57I CTGAAG 2 cut(s) 188, 1068
Eco72I CACGTG 1 cut(s) 320
Eco81I CCTNAGG 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 1394
EcoRII CCWGG 2 cut(s) 1261, 1372
EcoRV GATATC 1 cut(s) 418
EcoT38I GRGCYC 1 cut(s) 1396
FaeI CATG 3 cut(s) 135, 859, 1175
FaiI YATR 8 cut(s) 95, 133, 334, 526, 857, 1011, 1013, 1173
FalI AAGNNNNNCTT 4 cut(s) 162, 194, 681, 713
FaqI GGGAC 1 cut(s) 158
FatI CATG 3 cut(s) 131, 855, 1171
FauNDI CATATG 1 cut(s) 1011
FbaI TGATCA 2 cut(s) 19, 324
Fnu4HI GCNGC 4 cut(s) 431, 906, 981, 1044
FriOI GRGCYC 1 cut(s) 1396
Fsp4HI GCNGC 4 cut(s) 431, 906, 981, 1044
GlaI GCGC 1 cut(s) 310
GluI GCNGC 4 cut(s) 431, 906, 981, 1044
HaeII RGCGCY 1 cut(s) 312
HaeIII GGCC 1 cut(s) 433
HapII CCGG 3 cut(s) 601, 1094, 1214
HgaI GACGC 3 cut(s) 206, 973, 984
HhaI GCGC 1 cut(s) 311
Hin1I GRCGYC 1 cut(s) 965
Hin1II CATG 3 cut(s) 135, 859, 1175
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HincII GTYRAC 2 cut(s) 62, 999
HindII GTYRAC 2 cut(s) 62, 999
HinfI GANTC 6 cut(s) 370, 461, 597, 788, 817, 1141
HpaII CCGG 3 cut(s) 601, 1094, 1214
Hpy166II GTNNAC 4 cut(s) 62, 757, 782, 999
Hpy188I TCNGA 9 cut(s) 24, 105, 168, 207, 793, 816, 1081, 1102, 1146
Hpy188III TCNNGA 5 cut(s) 28, 247, 328, 474, 601
Hpy8I GTNNAC 4 cut(s) 62, 757, 782, 999
HpyAV CCTTC 1 cut(s) 1131
HpyCH4III ACNGT 6 cut(s) 66, 144, 152, 212, 1090, 1200
HpyCH4IV ACGT 3 cut(s) 319, 361, 778
HpyCH4V TGCA 9 cut(s) 238, 542, 587, 641, 773, 859, 971, 983, 1021
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 865, 977, 1049, 1264
HpyF3I CTNAG 9 cut(s) 45, 261, 507, 564, 813, 1099, 1323, 1333, 1338
HpySE526I ACGT 3 cut(s) 319, 361, 778
Hsp92I GRCGYC 1 cut(s) 965
Hsp92II CATG 3 cut(s) 135, 859, 1175
HspAI GCGC 1 cut(s) 309
Kpn2I TCCGGA 1 cut(s) 600
Ksp22I TGATCA 2 cut(s) 19, 324
Kzo9I GATC 7 cut(s) 19, 24, 120, 163, 324, 356, 440
LmnI GCTCC 3 cut(s) 105, 1391, 1399
Lsp1109I GCAGC 3 cut(s) 892, 967, 1055
LweI GCATC 5 cut(s) 497, 527, 760, 962, 980
MaeII ACGT 3 cut(s) 319, 361, 778
MaeIII GTNAC 2 cut(s) 81, 124
MalI GATC 7 cut(s) 21, 26, 122, 165, 326, 358, 442
MboI GATC 7 cut(s) 19, 24, 120, 163, 324, 356, 440
MflI RGATCY 2 cut(s) 24, 440
MhlI GDGCHC 2 cut(s) 1088, 1396
MluCI AATT 4 cut(s) 116, 482, 677, 1317
MlyI GAGTC 2 cut(s) 379, 470
MmeI TCCRAC 1 cut(s) 1382
MnlI CCTC 8 cut(s) 186, 414, 444, 835, 871, 1012, 1323, 1332
MroI TCCGGA 1 cut(s) 600
MroXI GAANNNNTTC 1 cut(s) 399
MseI TTAA 9 cut(s) 270, 375, 591, 723, 765, 807, 870, 1253, 1408
MslI CAYNNNNRTG 1 cut(s) 88
MspA1I CMGCKG 1 cut(s) 1046
MspI CCGG 3 cut(s) 601, 1094, 1214
MspR9I CCNGG 2 cut(s) 1263, 1374
MvaI CCWGG 2 cut(s) 1263, 1374
MvnI CGCG 1 cut(s) 438
MwoI GCNNNNNNNGC 5 cut(s) 46, 865, 977, 1049, 1264
NdeI CATATG 1 cut(s) 1011
NdeII GATC 7 cut(s) 19, 24, 120, 163, 324, 356, 440
NlaIII CATG 3 cut(s) 135, 859, 1175
NlaIV GGNNCC 1 cut(s) 442
NmuCI GTSAC 1 cut(s) 81
NspI RCATGY 1 cut(s) 859
OliI CACNNNNGTG 1 cut(s) 88
PcsI WCGNNNNNNNCGW 1 cut(s) 476
PdmI GAANNNNTTC 1 cut(s) 399
PfeI GAWTC 4 cut(s) 597, 788, 817, 1141
PinAI ACCGGT 1 cut(s) 1213
PkrI GCNGC 4 cut(s) 432, 907, 982, 1045
PleI GAGTC 2 cut(s) 378, 469
PmaCI CACGTG 1 cut(s) 320
PmlI CACGTG 1 cut(s) 320
PpsI GAGTC 2 cut(s) 378, 469
Ppu21I YACGTR 2 cut(s) 320, 779
Psp124BI GAGCTC 1 cut(s) 1396
Psp6I CCWGG 2 cut(s) 1261, 1372
PspCI CACGTG 1 cut(s) 320
PspGI CCWGG 2 cut(s) 1261, 1372
PspN4I GGNNCC 1 cut(s) 442
PspPI GGNCC 1 cut(s) 1355
PstI CTGCAG 1 cut(s) 589
PstNI CAGNNNCTG 1 cut(s) 28
PsuI RGATCY 2 cut(s) 24, 440
PvuII CAGCTG 1 cut(s) 1046
RsaI GTAC 2 cut(s) 154, 1169
RsaNI GTAC 2 cut(s) 153, 1168
RseI CAYNNNNRTG 1 cut(s) 88
SacI GAGCTC 1 cut(s) 1396
SaqAI TTAA 9 cut(s) 270, 375, 591, 723, 765, 807, 870, 1253, 1408
SatI GCNGC 4 cut(s) 431, 906, 981, 1044
Sau3AI GATC 7 cut(s) 19, 24, 120, 163, 324, 356, 440
Sau96I GGNCC 1 cut(s) 1355
SchI GAGTC 2 cut(s) 379, 470
ScrFI CCNGG 2 cut(s) 1263, 1374
SduI GDGCHC 2 cut(s) 1088, 1396
SfaNI GCATC 5 cut(s) 497, 527, 760, 962, 980
SfcI CTRYAG 1 cut(s) 585
SinI GGWCC 1 cut(s) 1355
SmiMI CAYNNNNRTG 1 cut(s) 88
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
Sse9I AATT 4 cut(s) 116, 482, 677, 1317
SsiI CCGC 3 cut(s) 430, 438, 1271
SstI GAGCTC 1 cut(s) 1396
StyD4I CCNGG 2 cut(s) 1261, 1372
TaaI ACNGT 6 cut(s) 66, 144, 152, 212, 1090, 1200
TaiI ACGT 3 cut(s) 322, 364, 781
TaqI TCGA 2 cut(s) 72, 1328
TasI AATT 4 cut(s) 116, 482, 677, 1317
TatI WGTACW 1 cut(s) 152
TauI GCSGC 1 cut(s) 433
TfiI GAWTC 4 cut(s) 597, 788, 817, 1141
Tru1I TTAA 9 cut(s) 270, 375, 591, 723, 765, 807, 870, 1253, 1408
Tru9I TTAA 9 cut(s) 270, 375, 591, 723, 765, 807, 870, 1253, 1408
TscAI CASTG 1 cut(s) 22
TseFI GTSAC 1 cut(s) 81
TseI GCWGC 3 cut(s) 905, 980, 1043
Tsp45I GTSAC 1 cut(s) 81
TspDTI ATGAA 5 cut(s) 570, 584, 1026, 1104, 1235
TspGWI ACGGA 2 cut(s) 1239, 1404
TspRI CASTG 1 cut(s) 22
VpaK11BI GGWCC 1 cut(s) 1355
XapI RAATTY 1 cut(s) 1317
XceI RCATGY 1 cut(s) 859
XmnI GAANNNNTTC 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.