FvH4_1g21760

Regulation of nuclear pre-mRNA domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
13707071 .. 13714184
7114 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g21760.t2

Sequence Viewer

Length: 1557 bp
ATGAGTAGTGTATTTAGTGAGCAGATACTTGCAGATAAGCTCTCCAAGCTCAACAGCACCCAGCAGTGTATCGAGACTTTGTCACACTGGTGTATATTTCATCGGAGCAAAGCTGAATTGGTTGTTACAACATGGGAGAAACAGTTCCATAGTGCACAAATGGTGCAAAAAGTCCCTCTCTTGTATCTTGCAAATGACATCCTACAGAACAGCAAGCGTAAAGGAAATGAATTTGTTACTGAGTTTTGGAAGGTTCTTCCAGGAGCGCTTAAAGTTATTAGTGAGGAAGGCGATGACCATGGAAAGAATGTTGTCTCTAGATTGGTTGGGATATGGGAAGAGAGGAGAGTTTTTGGGTCTCGCACACGGAGCCTTAAAGAACTAATGCTTGGGGAAGAAGTGCCTCCACCATTGGAGTTAAGTGGCAAAAAGCGCTCGCGTTCGGTCAGGATTATGAAAAGAGATTCACGCTCTATCAGAACGAAACTTTCCATTGGAGGTGCAGCTGAGAAGATTGTATCGGCATTTCACTTGGTGATCAGTGAAAATCCAAATGAAGATGCCGAGATGAGTAAATGCAAGTCTGCAGTTCACCAAGTAAGGAAGTTGGAGAAAGATGTTGACAGTGCCTGTACTACTGCAAAGGATCCAAAACGGAAAAGTCTAGCAAAAGAACTCGAGGAGGAAGAAAATGTGTTGAAGCAGTGTTTTGAAAAACTTAAATCAGTTGAAGCAAGTAGAGTAGCACTTGTATCTCAATTAAGAGAAGCTTTGCATGAACAGGAATCAGAACTGGAGAATGTTAGAACTCATATGCAGGTGGCACAAGCACAGGCAGAAGAAGCCAGCAACATGCGGAAACGGCTAAATGATGAAGATTATATATGTAATCCATCAAGTGCCGATGCAAATTCCAAAGGAGGGCAAACACCTAAGAAGTCTGCTGCAGCCATTGCAGCTCTGGTTGCAGACAAGCTTGCTGCTTCTAGTTCCTCTCAATTAATTATGACTTCTGTTCTTTCTACTTTTGCTGCTGAAGAGGCAAAGACTGCTGGCCTGACCAAGCCTTCCACCTCTTCCAATTCATTCCCATCCACGCCAAAGAGTTCGGGCACTGATTCAATGTCTAAACCTGAAAGGTCCATGCCAGTTTCAGATCCCATTGTTTTTATGTCAACACAGCCACCCGCTGTGCCTCCAAACCACTCGTACCAATCAGCAATGGTTCCGCAACAGCAGAATCATGTCCCGACCTCACAAGCTCAGTTTCATATGCTTCAAAACCCCTCTTCACAACAATATTTACAGCCTTCAGGAGGTGTCATGGGCCAATATGTTTACGGGAATATCCCACCTTTGCCTCTAGGAGCGCCACCACCCCCACCGCATATGGTAAGTCCAATGGTGCCTTTATCTCAGCAGCCCTTGCAAATGAACCAGCAGCCCTCACCAGTTACTCAGCAGCAACAAATACCCTTAATTCAACAACCTCCTACTTTCCGGCCACTTCAACCACCCGGAATGGTGTATTATAGCCTTCCTCATCATTCTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

519

Amino Acids

57.25

Weight (kDa)

8.81

Isoelectric Point (pI)

61.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CID PF04818 9 - 121 3.9e-36 CID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 808
Acc36I ACCTGC 1 cut(s) 808
AccB1I GGYRCC 1 cut(s) 1405
AccII CGCG 1 cut(s) 439
AciI CCGC 4 cut(s) 856, 1188, 1229, 1385
AclWI GGATC 3 cut(s) 641, 654, 1151
AcoI YGGCCR 1 cut(s) 1502
AcsI RAATTY 2 cut(s) 230, 910
AcuI CTGAAG 2 cut(s) 1056, 1296
AdeI CACNNNGTG 1 cut(s) 535
AfaI GTAC 2 cut(s) 634, 1211
AfeI AGCGCT 2 cut(s) 267, 434
AfiI CCNNNNNNNGG 2 cut(s) 921, 1316
AgsI TTSAA 7 cut(s) 700, 713, 731, 1122, 1280, 1484, 1511
AjnI CCWGG 1 cut(s) 259
AjuI GAANNNNNNNTTGG 2 cut(s) 372, 404
AleI CACNNNNGTG 1 cut(s) 88
AloI GAACNNNNNNTCC 2 cut(s) 128, 160
AluBI AGCT 8 cut(s) 40, 49, 113, 506, 770, 959, 976, 1262
AluI AGCT 8 cut(s) 40, 49, 113, 506, 770, 959, 976, 1262
Alw21I GWGCWC 1 cut(s) 157
Alw26I GTCTC 3 cut(s) 68, 319, 363
Alw44I GTGCAC 1 cut(s) 153
AlwI GGATC 3 cut(s) 641, 654, 1151
AlwNI CAGNNNCTG 1 cut(s) 630
Ama87I CYCGRG 1 cut(s) 677
Aor51HI AGCGCT 2 cut(s) 267, 434
AoxI GGCC 3 cut(s) 1054, 1327, 1502
ApaLI GTGCAC 1 cut(s) 153
ApeKI GCWGC 9 cut(s) 503, 944, 947, 956, 980, 1031, 1420, 1441, 1462
ApoI RAATTY 2 cut(s) 230, 910
AseI ATTAAT 1 cut(s) 1001
Asp700I GAANNNNTTC 1 cut(s) 143
AspLEI GCGC 3 cut(s) 268, 435, 1372
AspS9I GGNCC 2 cut(s) 1140, 1327
AsuC2I CCSGG 1 cut(s) 1518
AsuHPI GGTGA 3 cut(s) 547, 584, 1440
AvaI CYCGRG 1 cut(s) 677
AvaII GGWCC 1 cut(s) 1140
BaeGI GKGCMC 2 cut(s) 157, 1115
BamHI GGATCC 1 cut(s) 646
BanI GGYRCC 1 cut(s) 1405
Bbv12I GWGCWC 1 cut(s) 157
BbvI GCAGC 9 cut(s) 515, 931, 959, 967, 968, 1018, 1432, 1453, 1474
BccI CCATC 2 cut(s) 901, 1099
BceAI ACGGC 1 cut(s) 878
BciT130I CCWGG 1 cut(s) 261
BclI TGATCA 1 cut(s) 537
BcnI CCSGG 1 cut(s) 1518
BcoDI GTCTC 3 cut(s) 68, 319, 363
BfaI CTAG 4 cut(s) 318, 665, 987, 1364
BfmI CTRYAG 3 cut(s) 203, 585, 945
BfoI RGCGCY 3 cut(s) 269, 436, 1373
BfuAI ACCTGC 1 cut(s) 808
BisI GCNGC 9 cut(s) 504, 945, 948, 957, 981, 1032, 1421, 1442, 1463
BlsI GCNGC 9 cut(s) 505, 946, 949, 958, 982, 1033, 1422, 1443, 1464
Bme1390I CCNGG 2 cut(s) 261, 1518
Bme18I GGWCC 1 cut(s) 1140
BmeT110I CYCGRG 1 cut(s) 677
BmgT120I GGNCC 2 cut(s) 1140, 1327
BmiI GGNNCC 4 cut(s) 371, 648, 1227, 1407
BmrFI CCNGG 2 cut(s) 261, 1518
BmsI GCATC 2 cut(s) 550, 895
BpmI CTGGAG 1 cut(s) 815
BpuMI CCSGG 1 cut(s) 1518
BsaI GGTCTC 1 cut(s) 363
BsaJI CCNNGG 1 cut(s) 298
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 2 cut(s) 921, 1316
Bse1I ACTGG 4 cut(s) 92, 798, 1148, 1451
Bse3DI GCAATG 2 cut(s) 951, 1227
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 298
BseGI GGATG 2 cut(s) 198, 1091
BseLI CCNNNNNNNGG 2 cut(s) 921, 1316
BseMI GCAATG 2 cut(s) 951, 1227
BseMII CTCAG 5 cut(s) 231, 498, 1277, 1430, 1472
BseNI ACTGG 4 cut(s) 92, 798, 1148, 1451
BseRI GAGGAG 2 cut(s) 358, 695
BseSI GKGCMC 2 cut(s) 157, 1115
BseXI GCAGC 9 cut(s) 515, 931, 959, 967, 968, 1018, 1432, 1453, 1474
BseYI CCCAGC 1 cut(s) 60
BsgI GTGCAG 1 cut(s) 522
Bsh1236I CGCG 1 cut(s) 439
BshFI GGCC 3 cut(s) 1056, 1329, 1504
BshNI GGYRCC 1 cut(s) 1405
BsiHKAI GWGCWC 1 cut(s) 157
BsiHKCI CYCGRG 1 cut(s) 677
BsiSI CCGG 2 cut(s) 1501, 1518
BslFI GGGAC 2 cut(s) 158, 1232
BslI CCNNNNNNNGG 2 cut(s) 921, 1316
BsmAI GTCTC 3 cut(s) 68, 319, 363
BsmFI GGGAC 2 cut(s) 158, 1232
BsnI GGCC 3 cut(s) 1056, 1329, 1504
Bso31I GGTCTC 1 cut(s) 363
BsoBI CYCGRG 1 cut(s) 677
Bsp1286I GDGCHC 2 cut(s) 157, 1115
Bsp143I GATC 3 cut(s) 537, 646, 1156
Bsp19I CCATGG 1 cut(s) 298
BspACI CCGC 4 cut(s) 856, 1188, 1229, 1385
BspANI GGCC 3 cut(s) 1056, 1329, 1504
BspCNI CTCAG 5 cut(s) 232, 499, 1276, 1429, 1471
BspFNI CGCG 1 cut(s) 439
BspLI GGNNCC 4 cut(s) 371, 648, 1227, 1407
BspMAI CTGCAG 2 cut(s) 589, 949
BspMI ACCTGC 1 cut(s) 808
BspPI GGATC 3 cut(s) 641, 654, 1151
BspT107I GGYRCC 1 cut(s) 1405
BspTNI GGTCTC 1 cut(s) 363
BsrDI GCAATG 2 cut(s) 951, 1227
BsrI ACTGG 4 cut(s) 92, 798, 1148, 1451
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 3 cut(s) 537, 646, 1156
BssT1I CCWWGG 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 144, 626
Bst6I CTCTTC 4 cut(s) 333, 1032, 1081, 1294
BstAPI GCANNNNNTGC 3 cut(s) 953, 1049, 1426
BstC8I GCNNGC 5 cut(s) 215, 437, 847, 978, 1054
BstDEI CTNAG 7 cut(s) 240, 507, 933, 1263, 1416, 1458, 1551
BstDSI CCRYGG 1 cut(s) 298
BstENI CCTNNNNNAGG 1 cut(s) 1314
BstF5I GGATG 2 cut(s) 198, 1091
BstFNI CGCG 1 cut(s) 439
BstH2I RGCGCY 3 cut(s) 269, 436, 1373
BstHHI GCGC 3 cut(s) 268, 435, 1372
BstKTI GATC 3 cut(s) 540, 649, 1159
BstMAI GTCTC 3 cut(s) 68, 319, 363
BstMBI GATC 3 cut(s) 537, 646, 1156
BstNI CCWGG 1 cut(s) 261
BstNSI RCATGY 1 cut(s) 856
BstSCI CCNGG 2 cut(s) 259, 1516
BstSFI CTRYAG 3 cut(s) 203, 585, 945
BstSLI GKGCMC 2 cut(s) 157, 1115
BstUI CGCG 1 cut(s) 439
BstV1I GCAGC 9 cut(s) 515, 931, 959, 967, 968, 1018, 1432, 1453, 1474
BstX2I RGATCY 2 cut(s) 646, 1156
BstYI RGATCY 2 cut(s) 646, 1156
BsuRI GGCC 3 cut(s) 1056, 1329, 1504
BtgI CCRYGG 1 cut(s) 298
BtgZI GCGATG 1 cut(s) 306
BtsCI GGATG 2 cut(s) 198, 1091
BtsI GCAGTG 2 cut(s) 71, 710
BtsIMutI CAGTG 6 cut(s) 71, 85, 547, 631, 710, 1113
BveI ACCTGC 1 cut(s) 808
Cac8I GCNNGC 5 cut(s) 215, 437, 847, 978, 1054
CaiI CAGNNNCTG 1 cut(s) 630
CfoI GCGC 3 cut(s) 268, 435, 1372
Cfr13I GGNCC 2 cut(s) 1140, 1327
Csp6I GTAC 2 cut(s) 633, 1210
CviAII CATG 7 cut(s) 132, 299, 776, 853, 1144, 1244, 1324
CviQI GTAC 2 cut(s) 633, 1210
DdeI CTNAG 7 cut(s) 240, 507, 933, 1263, 1416, 1458, 1551
DpnI GATC 3 cut(s) 539, 648, 1158
DpnII GATC 3 cut(s) 537, 646, 1156
DraIII CACNNNGTG 1 cut(s) 535
EaeI YGGCCR 1 cut(s) 1502
Eam1104I CTCTTC 4 cut(s) 333, 1032, 1081, 1294
EarI CTCTTC 4 cut(s) 333, 1032, 1081, 1294
Eco130I CCWWGG 1 cut(s) 298
Eco31I GGTCTC 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 1140
Eco47III AGCGCT 2 cut(s) 267, 434
Eco57I CTGAAG 2 cut(s) 1056, 1296
Eco88I CYCGRG 1 cut(s) 677
EcoNI CCTNNNNNAGG 1 cut(s) 1314
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 298
FaeI CATG 7 cut(s) 135, 302, 779, 856, 1147, 1247, 1327
FalI AAGNNNNNCTT 2 cut(s) 754, 786
FaqI GGGAC 2 cut(s) 158, 1232
FatI CATG 7 cut(s) 131, 298, 775, 852, 1143, 1243, 1323
FauI CCCGC 1 cut(s) 1195
FauNDI CATATG 3 cut(s) 813, 1272, 1389
FbaI TGATCA 1 cut(s) 537
Fnu4HI GCNGC 9 cut(s) 504, 945, 948, 957, 981, 1032, 1421, 1442, 1463
FokI GGATG 2 cut(s) 185, 1078
Fsp4HI GCNGC 9 cut(s) 504, 945, 948, 957, 981, 1032, 1421, 1442, 1463
FspBI CTAG 4 cut(s) 318, 665, 987, 1364
GlaI GCGC 3 cut(s) 267, 434, 1371
GluI GCNGC 9 cut(s) 504, 945, 948, 957, 981, 1032, 1421, 1442, 1463
GsaI CCCAGC 1 cut(s) 64
GsuI CTGGAG 1 cut(s) 815
HaeII RGCGCY 3 cut(s) 269, 436, 1373
HaeIII GGCC 3 cut(s) 1056, 1329, 1504
HapII CCGG 2 cut(s) 1501, 1518
HhaI GCGC 3 cut(s) 268, 435, 1372
Hin1II CATG 7 cut(s) 135, 302, 779, 856, 1147, 1247, 1327
Hin6I GCGC 3 cut(s) 266, 433, 1370
HinP1I GCGC 3 cut(s) 266, 433, 1370
HincII GTYRAC 2 cut(s) 622, 1176
HindII GTYRAC 2 cut(s) 622, 1176
HindIII AAGCTT 2 cut(s) 768, 974
HinfI GANTC 4 cut(s) 464, 785, 1118, 1240
HpaII CCGG 2 cut(s) 1501, 1518
HphI GGTGA 3 cut(s) 547, 584, 1440
Hpy166II GTNNAC 5 cut(s) 155, 592, 622, 1176, 1339
Hpy188I TCNGA 4 cut(s) 105, 479, 790, 1156
Hpy188III TCNNGA 5 cut(s) 73, 318, 448, 1249, 1314
Hpy8I GTNNAC 5 cut(s) 155, 592, 622, 1176, 1339
HpyAV CCTTC 5 cut(s) 244, 281, 1077, 1320, 1547
HpyCH4III ACNGT 2 cut(s) 144, 626
HpyF3I CTNAG 7 cut(s) 240, 507, 933, 1263, 1416, 1458, 1551
Hsp92II CATG 7 cut(s) 135, 302, 779, 856, 1147, 1247, 1327
HspAI GCGC 3 cut(s) 266, 433, 1370
Ksp22I TGATCA 1 cut(s) 537
Kzo9I GATC 3 cut(s) 537, 646, 1156
LmnI GCTCC 4 cut(s) 105, 263, 369, 1367
Lsp1109I GCAGC 9 cut(s) 515, 931, 959, 967, 968, 1018, 1432, 1453, 1474
LweI GCATC 2 cut(s) 550, 895
MaeI CTAG 4 cut(s) 318, 665, 987, 1364
MaeIII GTNAC 4 cut(s) 81, 124, 235, 1453
MalI GATC 3 cut(s) 539, 648, 1158
MboI GATC 3 cut(s) 537, 646, 1156
MflI RGATCY 2 cut(s) 646, 1156
MhlI GDGCHC 2 cut(s) 157, 1115
MluCI AATT 8 cut(s) 116, 230, 758, 910, 998, 1002, 1081, 1479
MmeI TCCRAC 1 cut(s) 588
MroXI GAANNNNTTC 1 cut(s) 143
MseI TTAA 7 cut(s) 270, 375, 419, 720, 761, 1001, 1478
MslI CAYNNNNRTG 1 cut(s) 88
MspA1I CMGCKG 2 cut(s) 506, 1190
MspI CCGG 2 cut(s) 1501, 1518
MspR9I CCNGG 2 cut(s) 261, 1518
MvaI CCWGG 1 cut(s) 261
MvnI CGCG 1 cut(s) 439
NciI CCSGG 1 cut(s) 1518
NcoI CCATGG 1 cut(s) 298
NdeI CATATG 3 cut(s) 813, 1272, 1389
NdeII GATC 3 cut(s) 537, 646, 1156
NlaIII CATG 7 cut(s) 135, 302, 779, 856, 1147, 1247, 1327
NlaIV GGNNCC 4 cut(s) 371, 648, 1227, 1407
NmeAIII GCCGAG 1 cut(s) 589
NmuCI GTSAC 1 cut(s) 81
NspI RCATGY 1 cut(s) 856
OliI CACNNNNGTG 1 cut(s) 88
PaeR7I CTCGAG 1 cut(s) 677
PaqCI CACCTGC 1 cut(s) 808
PdmI GAANNNNTTC 1 cut(s) 143
PfeI GAWTC 4 cut(s) 464, 785, 1118, 1240
PflFI GACNNNGTC 1 cut(s) 79
PfoI TCCNGGA 1 cut(s) 259
PkrI GCNGC 9 cut(s) 505, 946, 949, 958, 982, 1033, 1422, 1443, 1464
PshBI ATTAAT 1 cut(s) 1001
Psp6I CCWGG 1 cut(s) 259
PspFI CCCAGC 1 cut(s) 60
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 4 cut(s) 371, 648, 1227, 1407
PspPI GGNCC 2 cut(s) 1140, 1327
PspXI VCTCGAGB 1 cut(s) 677
PstI CTGCAG 2 cut(s) 589, 949
PstNI CAGNNNCTG 1 cut(s) 630
PsuI RGATCY 2 cut(s) 646, 1156
PsyI GACNNNGTC 1 cut(s) 79
PvuII CAGCTG 1 cut(s) 506
RsaI GTAC 2 cut(s) 634, 1211
RsaNI GTAC 2 cut(s) 633, 1210
RseI CAYNNNNRTG 1 cut(s) 88
SaqAI TTAA 7 cut(s) 270, 375, 419, 720, 761, 1001, 1478
SatI GCNGC 9 cut(s) 504, 945, 948, 957, 981, 1032, 1421, 1442, 1463
Sau3AI GATC 3 cut(s) 537, 646, 1156
Sau96I GGNCC 2 cut(s) 1140, 1327
ScrFI CCNGG 2 cut(s) 261, 1518
SduI GDGCHC 2 cut(s) 157, 1115
SfaNI GCATC 2 cut(s) 550, 895
SfcI CTRYAG 3 cut(s) 203, 585, 945
Sfr274I CTCGAG 1 cut(s) 677
SinI GGWCC 1 cut(s) 1140
SlaI CTCGAG 1 cut(s) 677
SmiMI CAYNNNNRTG 1 cut(s) 88
SmlI CTYRAG 1 cut(s) 677
SmoI CTYRAG 1 cut(s) 677
Sse9I AATT 8 cut(s) 116, 230, 758, 910, 998, 1002, 1081, 1479
SsiI CCGC 4 cut(s) 856, 1188, 1229, 1385
SspI AATATT 1 cut(s) 1301
SspMI CTAG 4 cut(s) 318, 665, 987, 1364
StyD4I CCNGG 2 cut(s) 259, 1516
StyI CCWWGG 1 cut(s) 298
TaaI ACNGT 2 cut(s) 144, 626
TaqI TCGA 2 cut(s) 72, 678
TaqII GACCGA 1 cut(s) 433
TasI AATT 8 cut(s) 116, 230, 758, 910, 998, 1002, 1081, 1479
TatI WGTACW 1 cut(s) 632
TfiI GAWTC 4 cut(s) 464, 785, 1118, 1240
Tru1I TTAA 7 cut(s) 270, 375, 419, 720, 761, 1001, 1478
Tru9I TTAA 7 cut(s) 270, 375, 419, 720, 761, 1001, 1478
TscAI CASTG 6 cut(s) 71, 92, 547, 631, 710, 1120
TseFI GTSAC 1 cut(s) 81
TseI GCWGC 9 cut(s) 503, 944, 947, 956, 980, 1031, 1420, 1441, 1462
Tsp45I GTSAC 1 cut(s) 81
TspDTI ATGAA 9 cut(s) 89, 243, 470, 570, 792, 888, 1074, 1259, 1448
TspGWI ACGGA 2 cut(s) 382, 670
TspRI CASTG 6 cut(s) 71, 92, 547, 631, 710, 1120
Tth111I GACNNNGTC 1 cut(s) 79
VneI GTGCAC 1 cut(s) 153
VpaK11BI GGWCC 1 cut(s) 1140
VspI ATTAAT 1 cut(s) 1001
XagI CCTNNNNNAGG 1 cut(s) 1314
XapI RAATTY 2 cut(s) 230, 910
XbaI TCTAGA 1 cut(s) 317
XceI RCATGY 1 cut(s) 856
XcmI CCANNNNNNNNNTGG 1 cut(s) 958
XhoI CTCGAG 1 cut(s) 677
XmnI GAANNNNTTC 1 cut(s) 143
XspI CTAG 4 cut(s) 318, 665, 987, 1364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.