Rh2DG264300

Regulation of nuclear pre-mRNA domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0010009
Physical Location & Seq
Forward (+)
28467628 .. 28475476
7849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG264300.1

Sequence Viewer

Length: 1395 bp
ATGGTTCAAAAAGTCCCTCTCTTGTATCTTGCCAATGACATCCTGCAGAACAGCAAGCGTAAAGGAAATGAATTTGTTACCGAGTTTTGGAAGGTTCTTCCAGGAGCTCTTAAAGTTATTAATGATGAAGGCGATGACCATGGAAAGAATGTTGTCTCTAGATTGGTTGGTATATGGGAAGAGAGGAGAGTATTTGGGTCTCGCACGCGGAGCCTCAAAGAACTAATGCTTGGGCAAGAAGTGCCTCCACCCTTGGAGTTCAGTGGCAAAAAGCGCTCACGTTCAGTCAGAATTATGAAAAGAGATTCACGCTCTATCAGAACGAAACTTTCCATTGGAGGTGCAGCTGAGAAGATTGTATCGGCATTTCACTTGGTGATCGGTGAAAATCCAAATGAAGATGCTGAGATGAGTAAATGCAAGTCTGCAGTTCACCAAGTAAGGAAGTTGGAAAAAGATGTTGACAGTGCCTGTACTACTGCAAAGGATCCAAAACGGAAAAGTTTAGCAAAAGAACTCGAGGAGGAAGAAAATGTGTTGAAGCAGTGTTTTGAGAAACTTAAATCAGTTGAAGCGAGTAGAGTAGCACTTGTATCTCAATTAAGAGAAGCTTTGCATGAACAGGAATCCGAACTGGAGAATGTTCGAACTCATATGCAGGTGGCACAAGCACAGGCAGAAGAAGCCAGCAACATGCGGAAACGGCTAAATGATGAAGATTATATATTTAATCCATCAAGTGCTGATGCAAATTCCAAAGGAGGACACACACCAAAGAAGTCTGCTGCAGCCATTGCAGCTTTGGTTGCAGACAAGCTTGCTGCTTCTAGTTCCTCTCAACTAATTATGACTTCTGTTCTTTCTACTTTTGCTGCTGAAGAGGCAAAGAATGCTGGCCTGACCAAGCCCTCCACCTCTTCCAATTCATACCCATCCACGCCAAAGAGTTCGGGCACTGATTCAATGTCTAAACCCGAAAGGTCCATGCCAGTTTCAGATCCCAATGTTTTTATGTCAACACAGCCACCCGCTGCACCTCCAAACCACTCTTACCAATCAGCACTGGTTCCACAACAGCAGAATCATGTCCCAACCTCACAAGCTCAATTTCATATGCTTCAAAACCCATCCTCACAGCAATATTTACAGCCATCAGGAGGTGTCATGAGCCAATATGTTTACGGGAACATTCCACCTTTGCCTCTAGGACCACCACCACCCCCACCGCATATGGTAAGTCCAATGGTGCCAATGTCTCAGCAGCCCATGCAAATGAACCAGCAGCCCTCACCAATTACCCAGCAACAAATACCCTTAATTCAACAACCTCCTAGTTTCCGGCCACTTCAGCCACCCGGAATGGTGTATTATAGCCTTCCTCATCATTCTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTD_bind

Protein Analysis

464

Amino Acids

51.14

Weight (kDa)

9.08

Isoelectric Point (pI)

62.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CID PF04818 3 - 68 1.2e-18 CID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 649
Acc36I ACCTGC 1 cut(s) 649
AccB1I GGYRCC 1 cut(s) 1246
AccII CGCG 1 cut(s) 208
AciI CCGC 4 cut(s) 208, 697, 1029, 1226
AclWI GGATC 3 cut(s) 482, 495, 992
AcoI YGGCCR 1 cut(s) 1340
AcsI RAATTY 2 cut(s) 71, 751
AcuI CTGAAG 2 cut(s) 897, 1331
AdeI CACNNNGTG 1 cut(s) 376
AfaI GTAC 1 cut(s) 475
AfeI AGCGCT 1 cut(s) 275
AfiI CCNNNNNNNGG 2 cut(s) 87, 1157
AgsI TTSAA 6 cut(s) 8, 541, 572, 963, 1121, 1322
AjnI CCWGG 1 cut(s) 100
AjuI GAANNNNNNNTTGG 2 cut(s) 213, 245
AluBI AGCT 6 cut(s) 107, 347, 611, 800, 817, 1103
AluI AGCT 6 cut(s) 107, 347, 611, 800, 817, 1103
Alw21I GWGCWC 1 cut(s) 109
Alw26I GTCTC 3 cut(s) 160, 204, 1260
AlwI GGATC 3 cut(s) 482, 495, 992
AlwNI CAGNNNCTG 1 cut(s) 471
Ama87I CYCGRG 1 cut(s) 518
Aor51HI AGCGCT 1 cut(s) 275
AoxI GGCC 2 cut(s) 895, 1340
ApeKI GCWGC 9 cut(s) 344, 785, 788, 797, 821, 872, 1031, 1261, 1282
ApoI RAATTY 2 cut(s) 71, 751
AseI ATTAAT 1 cut(s) 120
AspLEI GCGC 1 cut(s) 276
AspS9I GGNCC 2 cut(s) 981, 1208
AsuC2I CCSGG 1 cut(s) 1356
AsuHPI GGTGA 4 cut(s) 388, 395, 425, 1281
AsuII TTCGAA 1 cut(s) 646
AvaI CYCGRG 1 cut(s) 518
AvaII GGWCC 2 cut(s) 981, 1208
BaeGI GKGCMC 1 cut(s) 956
BamHI GGATCC 1 cut(s) 487
BanI GGYRCC 1 cut(s) 1246
BanII GRGCYC 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 109
BbvI GCAGC 9 cut(s) 356, 772, 800, 808, 809, 859, 1018, 1273, 1294
BccI CCATC 4 cut(s) 742, 940, 1135, 1159
BceAI ACGGC 1 cut(s) 719
BciT130I CCWGG 1 cut(s) 102
BcnI CCSGG 1 cut(s) 1356
BcoDI GTCTC 3 cut(s) 160, 204, 1260
BfaI CTAG 4 cut(s) 159, 828, 1205, 1332
BfmI CTRYAG 3 cut(s) 44, 426, 786
BfoI RGCGCY 1 cut(s) 277
BfuAI ACCTGC 1 cut(s) 649
BisI GCNGC 9 cut(s) 345, 786, 789, 798, 822, 873, 1032, 1262, 1283
BlsI GCNGC 9 cut(s) 346, 787, 790, 799, 823, 874, 1033, 1263, 1284
Bme1390I CCNGG 2 cut(s) 102, 1356
Bme18I GGWCC 2 cut(s) 981, 1208
BmeT110I CYCGRG 1 cut(s) 518
BmgT120I GGNCC 2 cut(s) 981, 1208
BmiI GGNNCC 4 cut(s) 212, 489, 1068, 1248
BmrFI CCNGG 2 cut(s) 102, 1356
BmsI GCATC 2 cut(s) 391, 736
BpmI CTGGAG 1 cut(s) 656
Bpu14I TTCGAA 1 cut(s) 646
BpuMI CCSGG 1 cut(s) 1356
BsaI GGTCTC 1 cut(s) 204
BsaJI CCNNGG 2 cut(s) 139, 252
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 1157
Bse1I ACTGG 3 cut(s) 639, 989, 1068
Bse3DI GCAATG 1 cut(s) 792
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 2 cut(s) 139, 252
BseGI GGATG 3 cut(s) 39, 932, 1127
BseLI CCNNNNNNNGG 2 cut(s) 87, 1157
BseMI GCAATG 1 cut(s) 792
BseMII CTCAG 3 cut(s) 339, 396, 1271
BseNI ACTGG 3 cut(s) 639, 989, 1068
BseRI GAGGAG 2 cut(s) 199, 536
BseSI GKGCMC 1 cut(s) 956
BseXI GCAGC 9 cut(s) 356, 772, 800, 808, 809, 859, 1018, 1273, 1294
BseYI CCCAGC 1 cut(s) 1299
BsgI GTGCAG 2 cut(s) 363, 1017
Bsh1236I CGCG 1 cut(s) 208
BshFI GGCC 2 cut(s) 897, 1342
BshNI GGYRCC 1 cut(s) 1246
BsiHKAI GWGCWC 1 cut(s) 109
BsiHKCI CYCGRG 1 cut(s) 518
BsiSI CCGG 2 cut(s) 1339, 1356
BslFI GGGAC 1 cut(s) 1073
BslI CCNNNNNNNGG 2 cut(s) 87, 1157
BsmAI GTCTC 3 cut(s) 160, 204, 1260
BsmFI GGGAC 1 cut(s) 1073
BsmI GAATGC 1 cut(s) 895
BsnI GGCC 2 cut(s) 897, 1342
Bso31I GGTCTC 1 cut(s) 204
BsoBI CYCGRG 1 cut(s) 518
Bsp119I TTCGAA 1 cut(s) 646
Bsp1286I GDGCHC 2 cut(s) 109, 956
Bsp143I GATC 3 cut(s) 378, 487, 997
Bsp19I CCATGG 1 cut(s) 139
BspACI CCGC 4 cut(s) 208, 697, 1029, 1226
BspANI GGCC 2 cut(s) 897, 1342
BspCNI CTCAG 3 cut(s) 340, 397, 1270
BspFNI CGCG 1 cut(s) 208
BspHI TCATGA 1 cut(s) 1164
BspLI GGNNCC 4 cut(s) 212, 489, 1068, 1248
BspMAI CTGCAG 3 cut(s) 48, 430, 790
BspMI ACCTGC 1 cut(s) 649
BspPI GGATC 3 cut(s) 482, 495, 992
BspT104I TTCGAA 1 cut(s) 646
BspT107I GGYRCC 1 cut(s) 1246
BspTNI GGTCTC 1 cut(s) 204
BsrDI GCAATG 1 cut(s) 792
BsrI ACTGG 3 cut(s) 639, 989, 1068
BssECI CCNNGG 2 cut(s) 139, 252
BssMI GATC 3 cut(s) 378, 487, 997
BssT1I CCWWGG 2 cut(s) 139, 252
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 467
Bst6I CTCTTC 3 cut(s) 174, 873, 922
BstAPI GCANNNNNTGC 4 cut(s) 241, 794, 890, 1267
BstBI TTCGAA 1 cut(s) 646
BstC8I GCNNGC 5 cut(s) 56, 206, 688, 819, 895
BstDEI CTNAG 4 cut(s) 348, 405, 1257, 1389
BstDSI CCRYGG 1 cut(s) 139
BstF5I GGATG 3 cut(s) 39, 932, 1127
BstFNI CGCG 1 cut(s) 208
BstH2I RGCGCY 1 cut(s) 277
BstHHI GCGC 1 cut(s) 276
BstKTI GATC 3 cut(s) 381, 490, 1000
BstMAI GTCTC 3 cut(s) 160, 204, 1260
BstMBI GATC 3 cut(s) 378, 487, 997
BstNI CCWGG 1 cut(s) 102
BstNSI RCATGY 1 cut(s) 697
BstSCI CCNGG 2 cut(s) 100, 1354
BstSFI CTRYAG 3 cut(s) 44, 426, 786
BstSLI GKGCMC 1 cut(s) 956
BstUI CGCG 1 cut(s) 208
BstV1I GCAGC 9 cut(s) 356, 772, 800, 808, 809, 859, 1018, 1273, 1294
BstX2I RGATCY 2 cut(s) 487, 997
BstYI RGATCY 2 cut(s) 487, 997
BsuRI GGCC 2 cut(s) 897, 1342
BtgI CCRYGG 1 cut(s) 139
BtgZI GCGATG 1 cut(s) 147
BtsCI GGATG 3 cut(s) 39, 932, 1127
BtsI GCAGTG 1 cut(s) 551
BtsIMutI CAGTG 5 cut(s) 268, 472, 551, 954, 1061
BveI ACCTGC 1 cut(s) 649
Cac8I GCNNGC 5 cut(s) 56, 206, 688, 819, 895
CaiI CAGNNNCTG 1 cut(s) 471
CciI TCATGA 1 cut(s) 1164
CfoI GCGC 1 cut(s) 276
Cfr13I GGNCC 2 cut(s) 981, 1208
Csp6I GTAC 1 cut(s) 474
CviAII CATG 7 cut(s) 140, 617, 694, 985, 1085, 1165, 1267
CviQI GTAC 1 cut(s) 474
DdeI CTNAG 4 cut(s) 348, 405, 1257, 1389
DpnI GATC 3 cut(s) 380, 489, 999
DpnII GATC 3 cut(s) 378, 487, 997
DraIII CACNNNGTG 1 cut(s) 376
EaeI YGGCCR 1 cut(s) 1340
Eam1104I CTCTTC 3 cut(s) 174, 873, 922
EarI CTCTTC 3 cut(s) 174, 873, 922
Ecl136II GAGCTC 1 cut(s) 107
Eco130I CCWWGG 2 cut(s) 139, 252
Eco24I GRGCYC 1 cut(s) 109
Eco31I GGTCTC 1 cut(s) 204
Eco47I GGWCC 2 cut(s) 981, 1208
Eco47III AGCGCT 1 cut(s) 275
Eco53kI GAGCTC 1 cut(s) 107
Eco57I CTGAAG 2 cut(s) 897, 1331
Eco88I CYCGRG 1 cut(s) 518
EcoICRI GAGCTC 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 100
EcoT14I CCWWGG 2 cut(s) 139, 252
EcoT38I GRGCYC 1 cut(s) 109
ErhI CCWWGG 2 cut(s) 139, 252
FaeI CATG 7 cut(s) 143, 620, 697, 988, 1088, 1168, 1270
FalI AAGNNNNNCTT 2 cut(s) 595, 627
FaqI GGGAC 1 cut(s) 1073
FatI CATG 7 cut(s) 139, 616, 693, 984, 1084, 1164, 1266
FauI CCCGC 1 cut(s) 1036
FauNDI CATATG 3 cut(s) 654, 1113, 1230
Fnu4HI GCNGC 9 cut(s) 345, 786, 789, 798, 822, 873, 1032, 1262, 1283
FokI GGATG 3 cut(s) 26, 919, 1114
FriOI GRGCYC 1 cut(s) 109
Fsp4HI GCNGC 9 cut(s) 345, 786, 789, 798, 822, 873, 1032, 1262, 1283
FspBI CTAG 4 cut(s) 159, 828, 1205, 1332
GlaI GCGC 1 cut(s) 275
GluI GCNGC 9 cut(s) 345, 786, 789, 798, 822, 873, 1032, 1262, 1283
GsaI CCCAGC 1 cut(s) 1303
GsuI CTGGAG 1 cut(s) 656
HaeII RGCGCY 1 cut(s) 277
HaeIII GGCC 2 cut(s) 897, 1342
HapII CCGG 2 cut(s) 1339, 1356
HhaI GCGC 1 cut(s) 276
Hin1II CATG 7 cut(s) 143, 620, 697, 988, 1088, 1168, 1270
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HincII GTYRAC 2 cut(s) 463, 1017
HindII GTYRAC 2 cut(s) 463, 1017
HindIII AAGCTT 2 cut(s) 609, 815
HinfI GANTC 4 cut(s) 305, 626, 959, 1081
HpaII CCGG 2 cut(s) 1339, 1356
HphI GGTGA 4 cut(s) 388, 395, 425, 1281
Hpy166II GTNNAC 4 cut(s) 433, 463, 1017, 1180
Hpy188I TCNGA 4 cut(s) 290, 320, 631, 997
Hpy188III TCNNGA 3 cut(s) 159, 1155, 1165
Hpy8I GTNNAC 4 cut(s) 433, 463, 1017, 1180
HpyAV CCTTC 3 cut(s) 85, 122, 1385
HpyCH4III ACNGT 1 cut(s) 467
HpyCH4IV ACGT 1 cut(s) 280
HpyF3I CTNAG 4 cut(s) 348, 405, 1257, 1389
HpySE526I ACGT 1 cut(s) 280
Hsp92II CATG 7 cut(s) 143, 620, 697, 988, 1088, 1168, 1270
HspAI GCGC 1 cut(s) 274
Kzo9I GATC 3 cut(s) 378, 487, 997
LmnI GCTCC 2 cut(s) 104, 210
Lsp1109I GCAGC 9 cut(s) 356, 772, 800, 808, 809, 859, 1018, 1273, 1294
LweI GCATC 2 cut(s) 391, 736
MaeI CTAG 4 cut(s) 159, 828, 1205, 1332
MaeII ACGT 1 cut(s) 280
MaeIII GTNAC 1 cut(s) 76
MalI GATC 3 cut(s) 380, 489, 999
MboI GATC 3 cut(s) 378, 487, 997
MboII GAAGA 9 cut(s) 89, 191, 364, 410, 539, 692, 728, 890, 909
MflI RGATCY 2 cut(s) 487, 997
MhlI GDGCHC 2 cut(s) 109, 956
MluCI AATT 9 cut(s) 71, 291, 599, 751, 843, 922, 1106, 1293, 1317
MmeI TCCRAC 1 cut(s) 429
MseI TTAA 6 cut(s) 111, 120, 561, 602, 729, 1316
MslI CAYNNNNRTG 1 cut(s) 1271
MspA1I CMGCKG 2 cut(s) 347, 1031
MspI CCGG 2 cut(s) 1339, 1356
MspR9I CCNGG 2 cut(s) 102, 1356
Mva1269I GAATGC 1 cut(s) 895
MvaI CCWGG 1 cut(s) 102
MvnI CGCG 1 cut(s) 208
NciI CCSGG 1 cut(s) 1356
NcoI CCATGG 1 cut(s) 139
NdeI CATATG 3 cut(s) 654, 1113, 1230
NdeII GATC 3 cut(s) 378, 487, 997
NlaIII CATG 7 cut(s) 143, 620, 697, 988, 1088, 1168, 1270
NlaIV GGNNCC 4 cut(s) 212, 489, 1068, 1248
NspI RCATGY 1 cut(s) 697
NspV TTCGAA 1 cut(s) 646
PaeR7I CTCGAG 1 cut(s) 518
PagI TCATGA 1 cut(s) 1164
PaqCI CACCTGC 1 cut(s) 649
PctI GAATGC 1 cut(s) 895
PfeI GAWTC 4 cut(s) 305, 626, 959, 1081
PfoI TCCNGGA 1 cut(s) 100
PkrI GCNGC 9 cut(s) 346, 787, 790, 799, 823, 874, 1033, 1263, 1284
PshBI ATTAAT 1 cut(s) 120
Psp124BI GAGCTC 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 100
PspFI CCCAGC 1 cut(s) 1299
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 4 cut(s) 212, 489, 1068, 1248
PspPI GGNCC 2 cut(s) 981, 1208
PspXI VCTCGAGB 1 cut(s) 518
PstI CTGCAG 3 cut(s) 48, 430, 790
PstNI CAGNNNCTG 1 cut(s) 471
PsuI RGATCY 2 cut(s) 487, 997
PvuII CAGCTG 1 cut(s) 347
RsaI GTAC 1 cut(s) 475
RsaNI GTAC 1 cut(s) 474
RseI CAYNNNNRTG 1 cut(s) 1271
SacI GAGCTC 1 cut(s) 109
SaqAI TTAA 6 cut(s) 111, 120, 561, 602, 729, 1316
SatI GCNGC 9 cut(s) 345, 786, 789, 798, 822, 873, 1032, 1262, 1283
Sau3AI GATC 3 cut(s) 378, 487, 997
Sau96I GGNCC 2 cut(s) 981, 1208
ScrFI CCNGG 2 cut(s) 102, 1356
SduI GDGCHC 2 cut(s) 109, 956
SfaNI GCATC 2 cut(s) 391, 736
SfcI CTRYAG 3 cut(s) 44, 426, 786
Sfr274I CTCGAG 1 cut(s) 518
SfuI TTCGAA 1 cut(s) 646
SinI GGWCC 2 cut(s) 981, 1208
SlaI CTCGAG 1 cut(s) 518
SmiMI CAYNNNNRTG 1 cut(s) 1271
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
Sse9I AATT 9 cut(s) 71, 291, 599, 751, 843, 922, 1106, 1293, 1317
SsiI CCGC 4 cut(s) 208, 697, 1029, 1226
SspI AATATT 1 cut(s) 1142
SspMI CTAG 4 cut(s) 159, 828, 1205, 1332
SstI GAGCTC 1 cut(s) 109
StyD4I CCNGG 2 cut(s) 100, 1354
StyI CCWWGG 2 cut(s) 139, 252
TaaI ACNGT 1 cut(s) 467
TaiI ACGT 1 cut(s) 283
TaqI TCGA 2 cut(s) 519, 646
TasI AATT 9 cut(s) 71, 291, 599, 751, 843, 922, 1106, 1293, 1317
TatI WGTACW 1 cut(s) 473
TfiI GAWTC 4 cut(s) 305, 626, 959, 1081
Tru1I TTAA 6 cut(s) 111, 120, 561, 602, 729, 1316
Tru9I TTAA 6 cut(s) 111, 120, 561, 602, 729, 1316
TscAI CASTG 5 cut(s) 268, 472, 551, 961, 1068
TseI GCWGC 9 cut(s) 344, 785, 788, 797, 821, 872, 1031, 1261, 1282
TspDTI ATGAA 9 cut(s) 84, 141, 311, 411, 633, 729, 915, 1100, 1289
TspGWI ACGGA 1 cut(s) 511
TspRI CASTG 5 cut(s) 268, 472, 551, 961, 1068
VpaK11BI GGWCC 2 cut(s) 981, 1208
VspI ATTAAT 1 cut(s) 120
XapI RAATTY 2 cut(s) 71, 751
XbaI TCTAGA 1 cut(s) 158
XceI RCATGY 1 cut(s) 697
XcmI CCANNNNNNNNNTGG 1 cut(s) 799
XhoI CTCGAG 1 cut(s) 518
XspI CTAG 4 cut(s) 159, 828, 1205, 1332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.