Rroxscaffold_2G00128910

Regulation of nuclear pre-mRNA domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0010009
Physical Location & Seq
Reverse (-)
64686824 .. 64691547
4724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00128910.1

Sequence Viewer

Length: 1557 bp
ATGAGTAGTGTTTTCAGTGAGCAGATACTTGCAGATAAGCTCTCCAAGCTCAACAGCACCCAGCAGTGTATCGAAACTTTGTCACACTGGTGTATATTTCATCGGAGCAAAGCTGAATTGGTGGTTACAACATGGGAGAAACAGTTCCATAATGCACAAATGGTTCAAAAAGTCCCTCTCTTGTATCTTGCCAATGACATTCTACAGAACAGCAAGCGTAAAGGAAATGAATTTGTTACCGAGTTTTGGAAGGTTCTTCCAGGAGCTCTTAAAGTTATTAATGACGAAGGCGATGACCATGGAAAGAATGTTGTCTCTAGATTGGTTGGTATATGGGAAGAGAGGAGAGTATTTGGGTCTCGCACCCGGAGCCTCAAAGAACTAATGCTTGGGCAAGAAGTGCCTCCACCCTTGGAGTTCAGTGGCAAAAAGCGCTCACGTTCGGTCAGAATTATGAAAAGAGATTCACGCTCTATTAGAACGAAACTTTCCATTGGAGGTGCAGCTGAGAAGATTGTATCAGCATTTCACTTGGTGATCAGTGAAAATCCAAATGAAGATGCTGAGATGAGTAAATGCAAGTCTGCAGTTCACCAAGTAAGGAAGTTGGAAAAAGATGTTGACAGTGCCTGTACTACTGCAAAGGATCCAAAACGGAAAAGTTTAGCTAAGGAACTCAAGGAGGAAGAAAATGTGTTGAAGCAGTGTTTTGAGAAACTTAAATCAGTTGAAGCGAGTAGAGTAGCACTTGTATCTCAATTAAGAGAAGCTTTGCATGAACAGGAATCCGAACTGGAGAATGTTCGAACTCATATGCAGGTGGCACAAGCACAGGCAGAAGAAGCCAGCAACATGCGGAAACGGCTAAATGATGAAGATTATATATTTAATCCATCCAGTGCTGATGCAAATTCCAAAGGAGGACAAACACCAAAGAAGTCTGCTGCAGCCATTGCAGCTTTGGTTGCAGACAAGCTTGCTGCTTCTAGTTCCTCTCAACTAATTATGACTTCGGTTCTTTCTACTTTTGCTGCTGAAGAGGCGAAAAATGCTGGCCTGACCAAGCCCTCCACCTCTTCCAATTCATTCCCATCCACGCCAAAGAGTTCGGGCACTGATTCAATGTCTATACCCGAAAGGTCCATGCCAGTTTCAGATCCCAGTGTTTTTATGTCAACACAGCCGCCCACTGCGGCTCCAAACCACTCTTACCAATCAGCAATGGTTCCACAACAGCAGAATCATGTCCCAACCTCACAAGCTCAATTTCATATGCTTCAAAACCCATCCTCACAACAATATTTACAGCCATCAGGAGGTGTCATGAGCCAATATGTTTACGGGAACATTCCACCTTTGCCTCTAGGACCACCCCCACCCCCACCGCATATGGTAAGTCCAATGGTGCCAATGTCTCAGCAGCCCATGCAAATGAACCAGCAGCCCTCCCCAATTACCCAGCAGCAACAAATACCCTTAATTCAACAACCTCCTAGTTTCCGGCCACTTCAGCCACCCGGAATGGTGTATTATAGCCTTCCTCATCATTCTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTD_bind

Protein Analysis

518

Amino Acids

57.41

Weight (kDa)

9.04

Isoelectric Point (pI)

61.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CID PF04818 9 - 121 5.7e-36 CID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 808
Acc36I ACCTGC 1 cut(s) 808
AccB1I GGYRCC 1 cut(s) 1405
AciI CCGC 4 cut(s) 856, 1184, 1193, 1385
AclWI GGATC 3 cut(s) 641, 654, 1151
AcoI YGGCCR 1 cut(s) 1502
AcsI RAATTY 2 cut(s) 230, 910
AcuI CTGAAG 2 cut(s) 1056, 1493
AdeI CACNNNGTG 1 cut(s) 535
AfaI GTAC 1 cut(s) 634
AfeI AGCGCT 1 cut(s) 434
AfiI CCNNNNNNNGG 2 cut(s) 246, 1316
AgsI TTSAA 6 cut(s) 167, 700, 731, 1122, 1280, 1484
AjnI CCWGG 1 cut(s) 259
AjuI GAANNNNNNNTTGG 2 cut(s) 372, 404
AleI CACNNNNGTG 1 cut(s) 88
AloI GAACNNNNNNTCC 2 cut(s) 128, 160
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 3 cut(s) 319, 363, 1419
AlwI GGATC 3 cut(s) 641, 654, 1151
AlwNI CAGNNNCTG 1 cut(s) 630
Aor51HI AGCGCT 1 cut(s) 434
AoxI GGCC 2 cut(s) 1054, 1502
ApeKI GCWGC 9 cut(s) 503, 944, 947, 956, 980, 1031, 1420, 1441, 1462
ApoI RAATTY 2 cut(s) 230, 910
AseI ATTAAT 1 cut(s) 279
Asp700I GAANNNNTTC 1 cut(s) 143
AspLEI GCGC 1 cut(s) 435
AspS9I GGNCC 2 cut(s) 1140, 1367
AsuC2I CCSGG 2 cut(s) 367, 1518
AsuHPI GGTGA 2 cut(s) 547, 584
AsuII TTCGAA 1 cut(s) 805
AvaII GGWCC 2 cut(s) 1140, 1367
BaeGI GKGCMC 1 cut(s) 1115
BamHI GGATCC 1 cut(s) 646
BanI GGYRCC 1 cut(s) 1405
BanII GRGCYC 1 cut(s) 268
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 9 cut(s) 515, 931, 959, 967, 968, 1018, 1432, 1453, 1474
BccI CCATC 4 cut(s) 901, 1099, 1294, 1318
BceAI ACGGC 1 cut(s) 878
BciT130I CCWGG 1 cut(s) 261
BclI TGATCA 1 cut(s) 537
BcnI CCSGG 2 cut(s) 367, 1518
BcoDI GTCTC 3 cut(s) 319, 363, 1419
BfaI CTAG 4 cut(s) 318, 987, 1364, 1494
BfmI CTRYAG 3 cut(s) 203, 585, 945
BfoI RGCGCY 1 cut(s) 436
BfuAI ACCTGC 1 cut(s) 808
Bme1390I CCNGG 3 cut(s) 261, 367, 1518
Bme18I GGWCC 2 cut(s) 1140, 1367
BmgT120I GGNCC 2 cut(s) 1140, 1367
BmiI GGNNCC 5 cut(s) 371, 648, 1197, 1227, 1407
BmrFI CCNGG 3 cut(s) 261, 367, 1518
BmrI ACTGGG 1 cut(s) 1155
BmsI GCATC 2 cut(s) 550, 895
BmuI ACTGGG 1 cut(s) 1155
BpmI CTGGAG 1 cut(s) 815
Bpu10I CCTNAGC 1 cut(s) 669
Bpu14I TTCGAA 1 cut(s) 805
BpuEI CTTGAG 1 cut(s) 662
BpuMI CCSGG 2 cut(s) 367, 1518
BsaI GGTCTC 1 cut(s) 363
BsaJI CCNNGG 2 cut(s) 298, 411
BsaXI ACNNNNNCTCC 4 cut(s) 128, 158, 1180, 1210
Bsc4I CCNNNNNNNGG 2 cut(s) 246, 1316
Bse1I ACTGG 5 cut(s) 92, 798, 897, 1148, 1161
Bse3DI GCAATG 2 cut(s) 951, 1227
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 2 cut(s) 298, 411
BseGI GGATG 3 cut(s) 893, 1091, 1286
BseLI CCNNNNNNNGG 2 cut(s) 246, 1316
BseMI GCAATG 2 cut(s) 951, 1227
BseMII CTCAG 3 cut(s) 498, 555, 1430
BseNI ACTGG 5 cut(s) 92, 798, 897, 1148, 1161
BseRI GAGGAG 1 cut(s) 358
BseSI GKGCMC 1 cut(s) 1115
BseXI GCAGC 9 cut(s) 515, 931, 959, 967, 968, 1018, 1432, 1453, 1474
BseYI CCCAGC 2 cut(s) 60, 1458
BsgI GTGCAG 1 cut(s) 522
BshFI GGCC 2 cut(s) 1056, 1504
BshNI GGYRCC 1 cut(s) 1405
BsiHKAI GWGCWC 1 cut(s) 268
BsiSI CCGG 3 cut(s) 367, 1501, 1518
BslFI GGGAC 2 cut(s) 158, 1232
BslI CCNNNNNNNGG 2 cut(s) 246, 1316
BsmAI GTCTC 3 cut(s) 319, 363, 1419
BsmFI GGGAC 2 cut(s) 158, 1232
BsnI GGCC 2 cut(s) 1056, 1504
Bso31I GGTCTC 1 cut(s) 363
Bsp119I TTCGAA 1 cut(s) 805
Bsp1286I GDGCHC 2 cut(s) 268, 1115
Bsp143I GATC 3 cut(s) 537, 646, 1156
Bsp19I CCATGG 1 cut(s) 298
BspACI CCGC 4 cut(s) 856, 1184, 1193, 1385
BspANI GGCC 2 cut(s) 1056, 1504
BspCNI CTCAG 3 cut(s) 499, 556, 1429
BspHI TCATGA 1 cut(s) 1323
BspLI GGNNCC 5 cut(s) 371, 648, 1197, 1227, 1407
BspMAI CTGCAG 2 cut(s) 589, 949
BspMI ACCTGC 1 cut(s) 808
BspPI GGATC 3 cut(s) 641, 654, 1151
BspT104I TTCGAA 1 cut(s) 805
BspT107I GGYRCC 1 cut(s) 1405
BspTNI GGTCTC 1 cut(s) 363
BsrDI GCAATG 2 cut(s) 951, 1227
BsrI ACTGG 5 cut(s) 92, 798, 897, 1148, 1161
BssECI CCNNGG 2 cut(s) 298, 411
BssMI GATC 3 cut(s) 537, 646, 1156
BssT1I CCWWGG 2 cut(s) 298, 411
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 144, 626
Bst6I CTCTTC 3 cut(s) 333, 1032, 1081
BstAPI GCANNNNNTGC 3 cut(s) 400, 953, 1426
BstBI TTCGAA 1 cut(s) 805
BstC8I GCNNGC 4 cut(s) 215, 847, 978, 1054
BstDEI CTNAG 5 cut(s) 507, 564, 669, 1416, 1551
BstDSI CCRYGG 1 cut(s) 298
BstF5I GGATG 3 cut(s) 893, 1091, 1286
BstH2I RGCGCY 1 cut(s) 436
BstHHI GCGC 1 cut(s) 435
BstKTI GATC 3 cut(s) 540, 649, 1159
BstMAI GTCTC 3 cut(s) 319, 363, 1419
BstMBI GATC 3 cut(s) 537, 646, 1156
BstNI CCWGG 1 cut(s) 261
BstNSI RCATGY 1 cut(s) 856
BstSCI CCNGG 3 cut(s) 259, 365, 1516
BstSFI CTRYAG 3 cut(s) 203, 585, 945
BstSLI GKGCMC 1 cut(s) 1115
BstV1I GCAGC 9 cut(s) 515, 931, 959, 967, 968, 1018, 1432, 1453, 1474
BstX2I RGATCY 2 cut(s) 646, 1156
BstYI RGATCY 2 cut(s) 646, 1156
BsuRI GGCC 2 cut(s) 1056, 1504
BtgI CCRYGG 1 cut(s) 298
BtgZI GCGATG 1 cut(s) 306
BtsCI GGATG 3 cut(s) 893, 1091, 1286
BtsI GCAGTG 3 cut(s) 71, 710, 1188
BveI ACCTGC 1 cut(s) 808
Cac8I GCNNGC 4 cut(s) 215, 847, 978, 1054
CaiI CAGNNNCTG 1 cut(s) 630
CciI TCATGA 1 cut(s) 1323
CfoI GCGC 1 cut(s) 435
Cfr13I GGNCC 2 cut(s) 1140, 1367
Csp6I GTAC 1 cut(s) 633
CviAII CATG 8 cut(s) 132, 299, 776, 853, 1144, 1244, 1324, 1426
CviQI GTAC 1 cut(s) 633
DdeI CTNAG 5 cut(s) 507, 564, 669, 1416, 1551
DpnI GATC 3 cut(s) 539, 648, 1158
DpnII GATC 3 cut(s) 537, 646, 1156
DraIII CACNNNGTG 1 cut(s) 535
EaeI YGGCCR 1 cut(s) 1502
Eam1104I CTCTTC 3 cut(s) 333, 1032, 1081
EarI CTCTTC 3 cut(s) 333, 1032, 1081
Ecl136II GAGCTC 1 cut(s) 266
Eco130I CCWWGG 2 cut(s) 298, 411
Eco24I GRGCYC 1 cut(s) 268
Eco31I GGTCTC 1 cut(s) 363
Eco47I GGWCC 2 cut(s) 1140, 1367
Eco47III AGCGCT 1 cut(s) 434
Eco53kI GAGCTC 1 cut(s) 266
Eco57I CTGAAG 2 cut(s) 1056, 1493
EcoICRI GAGCTC 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 2 cut(s) 298, 411
EcoT38I GRGCYC 1 cut(s) 268
ErhI CCWWGG 2 cut(s) 298, 411
FaeI CATG 8 cut(s) 135, 302, 779, 856, 1147, 1247, 1327, 1429
FalI AAGNNNNNCTT 2 cut(s) 754, 786
FaqI GGGAC 2 cut(s) 158, 1232
FatI CATG 8 cut(s) 131, 298, 775, 852, 1143, 1243, 1323, 1425
FauNDI CATATG 3 cut(s) 813, 1272, 1389
FbaI TGATCA 1 cut(s) 537
FokI GGATG 3 cut(s) 880, 1078, 1273
FriOI GRGCYC 1 cut(s) 268
FspBI CTAG 4 cut(s) 318, 987, 1364, 1494
GlaI GCGC 1 cut(s) 434
GsaI CCCAGC 2 cut(s) 64, 1462
GsuI CTGGAG 1 cut(s) 815
HaeII RGCGCY 1 cut(s) 436
HaeIII GGCC 2 cut(s) 1056, 1504
HapII CCGG 3 cut(s) 367, 1501, 1518
HhaI GCGC 1 cut(s) 435
Hin1II CATG 8 cut(s) 135, 302, 779, 856, 1147, 1247, 1327, 1429
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HincII GTYRAC 2 cut(s) 622, 1176
HindII GTYRAC 2 cut(s) 622, 1176
HindIII AAGCTT 2 cut(s) 768, 974
HinfI GANTC 4 cut(s) 464, 785, 1118, 1240
HpaII CCGG 3 cut(s) 367, 1501, 1518
HphI GGTGA 2 cut(s) 547, 584
Hpy166II GTNNAC 4 cut(s) 592, 622, 1176, 1339
Hpy188I TCNGA 4 cut(s) 105, 449, 790, 1156
Hpy188III TCNNGA 3 cut(s) 318, 1314, 1324
Hpy8I GTNNAC 4 cut(s) 592, 622, 1176, 1339
HpyAV CCTTC 3 cut(s) 244, 281, 1547
HpyCH4III ACNGT 2 cut(s) 144, 626
HpyCH4IV ACGT 1 cut(s) 439
HpyF3I CTNAG 5 cut(s) 507, 564, 669, 1416, 1551
HpySE526I ACGT 1 cut(s) 439
Hsp92II CATG 8 cut(s) 135, 302, 779, 856, 1147, 1247, 1327, 1429
HspAI GCGC 1 cut(s) 433
Ksp22I TGATCA 1 cut(s) 537
Kzo9I GATC 3 cut(s) 537, 646, 1156
LmnI GCTCC 4 cut(s) 105, 263, 369, 1201
Lsp1109I GCAGC 9 cut(s) 515, 931, 959, 967, 968, 1018, 1432, 1453, 1474
LweI GCATC 2 cut(s) 550, 895
MaeI CTAG 4 cut(s) 318, 987, 1364, 1494
MaeII ACGT 1 cut(s) 439
MaeIII GTNAC 3 cut(s) 81, 124, 235
MalI GATC 3 cut(s) 539, 648, 1158
MboI GATC 3 cut(s) 537, 646, 1156
MboII GAAGA 9 cut(s) 248, 350, 523, 569, 698, 851, 887, 1049, 1068
MflI RGATCY 2 cut(s) 646, 1156
MhlI GDGCHC 2 cut(s) 268, 1115
MmeI TCCRAC 1 cut(s) 588
MroXI GAANNNNTTC 1 cut(s) 143
MseI TTAA 6 cut(s) 270, 279, 720, 761, 888, 1478
MslI CAYNNNNRTG 2 cut(s) 88, 1430
MspA1I CMGCKG 1 cut(s) 506
MspI CCGG 3 cut(s) 367, 1501, 1518
MspR9I CCNGG 3 cut(s) 261, 367, 1518
MvaI CCWGG 1 cut(s) 261
NciI CCSGG 2 cut(s) 367, 1518
NcoI CCATGG 1 cut(s) 298
NdeI CATATG 3 cut(s) 813, 1272, 1389
NdeII GATC 3 cut(s) 537, 646, 1156
NlaIII CATG 8 cut(s) 135, 302, 779, 856, 1147, 1247, 1327, 1429
NlaIV GGNNCC 5 cut(s) 371, 648, 1197, 1227, 1407
NmuCI GTSAC 1 cut(s) 81
NspI RCATGY 1 cut(s) 856
NspV TTCGAA 1 cut(s) 805
OliI CACNNNNGTG 1 cut(s) 88
PagI TCATGA 1 cut(s) 1323
PaqCI CACCTGC 1 cut(s) 808
PdmI GAANNNNTTC 1 cut(s) 143
PfeI GAWTC 4 cut(s) 464, 785, 1118, 1240
PfoI TCCNGGA 1 cut(s) 259
PshBI ATTAAT 1 cut(s) 279
Psp124BI GAGCTC 1 cut(s) 268
Psp6I CCWGG 1 cut(s) 259
PspFI CCCAGC 2 cut(s) 60, 1458
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 5 cut(s) 371, 648, 1197, 1227, 1407
PspPI GGNCC 2 cut(s) 1140, 1367
PstI CTGCAG 2 cut(s) 589, 949
PstNI CAGNNNCTG 1 cut(s) 630
PsuI RGATCY 2 cut(s) 646, 1156
PvuII CAGCTG 1 cut(s) 506
RsaI GTAC 1 cut(s) 634
RsaNI GTAC 1 cut(s) 633
RseI CAYNNNNRTG 2 cut(s) 88, 1430
SacI GAGCTC 1 cut(s) 268
SaqAI TTAA 6 cut(s) 270, 279, 720, 761, 888, 1478
Sau3AI GATC 3 cut(s) 537, 646, 1156
Sau96I GGNCC 2 cut(s) 1140, 1367
ScrFI CCNGG 3 cut(s) 261, 367, 1518
SduI GDGCHC 2 cut(s) 268, 1115
SfaNI GCATC 2 cut(s) 550, 895
SfcI CTRYAG 3 cut(s) 203, 585, 945
SfuI TTCGAA 1 cut(s) 805
SinI GGWCC 2 cut(s) 1140, 1367
SmiMI CAYNNNNRTG 2 cut(s) 88, 1430
SmlI CTYRAG 1 cut(s) 677
SmoI CTYRAG 1 cut(s) 677
SsiI CCGC 4 cut(s) 856, 1184, 1193, 1385
SspI AATATT 1 cut(s) 1301
SspMI CTAG 4 cut(s) 318, 987, 1364, 1494
SstI GAGCTC 1 cut(s) 268
StyD4I CCNGG 3 cut(s) 259, 365, 1516
StyI CCWWGG 2 cut(s) 298, 411
TaaI ACNGT 2 cut(s) 144, 626
TaiI ACGT 1 cut(s) 442
TaqI TCGA 2 cut(s) 72, 805
TaqII GACCGA 1 cut(s) 433
TatI WGTACW 1 cut(s) 632
TauI GCSGC 2 cut(s) 1186, 1196
TfiI GAWTC 4 cut(s) 464, 785, 1118, 1240
Tru1I TTAA 6 cut(s) 270, 279, 720, 761, 888, 1478
Tru9I TTAA 6 cut(s) 270, 279, 720, 761, 888, 1478
TseFI GTSAC 1 cut(s) 81
TseI GCWGC 9 cut(s) 503, 944, 947, 956, 980, 1031, 1420, 1441, 1462
Tsp45I GTSAC 1 cut(s) 81
TspDTI ATGAA 9 cut(s) 89, 243, 470, 570, 792, 888, 1074, 1259, 1448
TspGWI ACGGA 1 cut(s) 670
VpaK11BI GGWCC 2 cut(s) 1140, 1367
VspI ATTAAT 1 cut(s) 279
XapI RAATTY 2 cut(s) 230, 910
XbaI TCTAGA 1 cut(s) 317
XceI RCATGY 1 cut(s) 856
XcmI CCANNNNNNNNNTGG 1 cut(s) 958
XmnI GAANNNNTTC 1 cut(s) 143
XspI CTAG 4 cut(s) 318, 987, 1364, 1494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.