RchiOBHm_Chr2g0115631

Regulation of nuclear pre-mRNA domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0010009
Physical Location & Seq
Forward (+)
27795226 .. 27800099
4874 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48879

Sequence Viewer

Length: 1554 bp
ATGAGTAGTGTTTTCAGTGAGCAGATACTTGCAGATAAGCTCTCCAAGCTCAACAGCACCCAGCAGTGTATCGAAACTTTGTCACACTGGTGTATATTTCATCGGAGCAAAGCTGAATTGGTGGTTACAACGTGGGAGAAACAGTTCCATAATGCACAAATGGTTCAAAAAGTCCCTCTCTTGTATCTTGCCAATGACATCCTGCAGAACAGCAAGCGTAAAGGAAATGAATTTGTTACCGAGTTTTGGAAGGTTCTTCCAGGAGCTCTTAAAGTTATTAATGATGAAGGTGATGACCATGGAAAGAATGTTGTCTCTAGATTGGTTGGTATATGGGAAGAGAGGAGAGTATTTGGGTCTCGCACGCGGAGCCTCAAAGAACTAATGCTTGGGCAAGAAGTGCCTCCACCCTTGGAGTTCAGTGGCAAAAAGCGCTCACGTTCAGTCAGAATTATGAAAAGAGATTCACGCTCTATCAGAACGAAACTTTCCATTGGAGGTGCAGCTGAGAAGATTGTATCGGCATTTCACTTGGTGATCGGTGAAAATCCAAATGAAGATGCCGAGATGAGCAAATGCAAGTCTGCAGTTCACCAAGTAAGGAAGTTGGAAAAAGATGTTGACAGTGCCTGTACTACTGCAAAGGATCCAAAACGGAAAAGTTTAGCCAAAGAACTCGAGGAGGAAGAAAATGTGTTGAAGCAGTGTTTTGAGAAACTTAAATCAGTTGAAGCGAGTAGAGTAGCACTTGTATCTCAATTAAGAGAAGCTTTGCATGAACAGGAATCTGAACTGGAGAATGTTCGAACTCATATGCAGGTGGCACAAGCACAGGCAGAAGAAGCCAGCAACATGCGGAAACGGCTAAATGATGAAGATTATATATTTAATCCATCAAGTGCTGATGCTAATTCCAAAGGACACACACCAAAGAAGTCTGCTGCAGCCATTGCCGCTTTGGTTGCAGACAAGCTTGCTGCTTCTAGCTCCTCTCAACTAATTATGACTTCTGTACTTTCTACTTTTGCTGCTGAAGAGGCGAAGAATGCTGGCCTGACCAAGCCCTCCACCTCTTCCAATTCATACCCATCCACACCAAAGAGTTCGGGCACTGATTCAATGTCTAAACCCGAAAGGTCCATGCCAGTTTCAGATCCCAATGTTTTTATGTCAACACAGCCACCCACTGCGCCTCCAAACCACTCTTACCAATCAGCAATGGTTCCACAACAGCAGAATCATGTCCCAACCTCACAAGCTCAATTTCATATGCTTCAAAACCCATCCTCACAACAATATTTACAGCCATCAGGAGGTGTCATGAGCCAATATGTTTACGGGAACATTCCACCTTTGCCTCTAGGACCACCACCACCCCCACCGCATATGGTAAGTCCAATGGTGCCAATGTCTCAGCAGCCCATGCAAATGAACCAGCAGCCCTCCCCAATTACCCAGCAGCAACAAATACCCTTAATTCAACAACCTCCTAGTTTCCGGCCACTTCAGCCACCCGGAATGGTGTATTATAGCCTTCCTCATCATTCTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTD_bind

Protein Analysis

517

Amino Acids

57.42

Weight (kDa)

8.95

Isoelectric Point (pI)

60.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CID PF04818 9 - 121 5.7e-36 CID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 808
Acc36I ACCTGC 1 cut(s) 808
AccB1I GGYRCC 1 cut(s) 1402
AccII CGCG 1 cut(s) 367
AciI CCGC 4 cut(s) 367, 856, 954, 1382
AclWI GGATC 3 cut(s) 641, 654, 1148
AcoI YGGCCR 1 cut(s) 1499
AcsI RAATTY 1 cut(s) 230
AcuI CTGAAG 2 cut(s) 1053, 1490
AdeI CACNNNGTG 1 cut(s) 535
AfaI GTAC 2 cut(s) 634, 1014
AfeI AGCGCT 1 cut(s) 434
AfiI CCNNNNNNNGG 2 cut(s) 246, 1313
AgsI TTSAA 6 cut(s) 167, 700, 731, 1119, 1277, 1481
AjnI CCWGG 1 cut(s) 259
AjuI GAANNNNNNNTTGG 2 cut(s) 372, 404
AleI CACNNNNGTG 1 cut(s) 88
AloI GAACNNNNNNTCC 2 cut(s) 128, 160
AluBI AGCT 9 cut(s) 40, 49, 113, 266, 506, 770, 973, 987, 1259
AluI AGCT 9 cut(s) 40, 49, 113, 266, 506, 770, 973, 987, 1259
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 3 cut(s) 319, 363, 1416
AlwI GGATC 3 cut(s) 641, 654, 1148
AlwNI CAGNNNCTG 1 cut(s) 630
Ama87I CYCGRG 1 cut(s) 677
Aor51HI AGCGCT 1 cut(s) 434
AoxI GGCC 2 cut(s) 1051, 1499
ApeKI GCWGC 8 cut(s) 503, 941, 944, 977, 1028, 1417, 1438, 1459
ApoI RAATTY 1 cut(s) 230
AseI ATTAAT 1 cut(s) 279
Asp700I GAANNNNTTC 1 cut(s) 143
AspLEI GCGC 2 cut(s) 435, 1192
AspS9I GGNCC 2 cut(s) 1137, 1364
AsuC2I CCSGG 1 cut(s) 1515
AsuHPI GGTGA 4 cut(s) 302, 547, 554, 584
AsuII TTCGAA 1 cut(s) 805
AvaI CYCGRG 1 cut(s) 677
AvaII GGWCC 2 cut(s) 1137, 1364
BaeGI GKGCMC 1 cut(s) 1112
BamHI GGATCC 1 cut(s) 646
BanI GGYRCC 1 cut(s) 1402
BanII GRGCYC 1 cut(s) 268
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 8 cut(s) 515, 928, 956, 964, 1015, 1429, 1450, 1471
BccI CCATC 4 cut(s) 901, 1096, 1291, 1315
BceAI ACGGC 1 cut(s) 878
BciT130I CCWGG 1 cut(s) 261
BcnI CCSGG 1 cut(s) 1515
BcoDI GTCTC 3 cut(s) 319, 363, 1416
BfaI CTAG 4 cut(s) 318, 984, 1361, 1491
BfmI CTRYAG 3 cut(s) 203, 585, 942
BfoI RGCGCY 1 cut(s) 436
BfuAI ACCTGC 1 cut(s) 808
BisI GCNGC 9 cut(s) 504, 942, 945, 954, 978, 1029, 1418, 1439, 1460
BlsI GCNGC 9 cut(s) 505, 943, 946, 955, 979, 1030, 1419, 1440, 1461
Bme1390I CCNGG 2 cut(s) 261, 1515
Bme18I GGWCC 2 cut(s) 1137, 1364
BmeT110I CYCGRG 1 cut(s) 677
BmgT120I GGNCC 2 cut(s) 1137, 1364
BmiI GGNNCC 4 cut(s) 371, 648, 1224, 1404
BmrFI CCNGG 2 cut(s) 261, 1515
BmsI GCATC 2 cut(s) 550, 895
BpmI CTGGAG 1 cut(s) 815
Bpu14I TTCGAA 1 cut(s) 805
BpuMI CCSGG 1 cut(s) 1515
BsaI GGTCTC 1 cut(s) 363
BsaJI CCNNGG 2 cut(s) 298, 411
BsaXI ACNNNNNCTCC 4 cut(s) 128, 158, 1177, 1207
Bsc4I CCNNNNNNNGG 2 cut(s) 246, 1313
Bse1I ACTGG 3 cut(s) 92, 798, 1145
Bse3DI GCAATG 2 cut(s) 948, 1224
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 2 cut(s) 298, 411
BseGI GGATG 3 cut(s) 198, 1088, 1283
BseLI CCNNNNNNNGG 2 cut(s) 246, 1313
BseMI GCAATG 2 cut(s) 948, 1224
BseMII CTCAG 2 cut(s) 498, 1427
BseNI ACTGG 3 cut(s) 92, 798, 1145
BseRI GAGGAG 3 cut(s) 358, 695, 979
BseSI GKGCMC 1 cut(s) 1112
BseXI GCAGC 8 cut(s) 515, 928, 956, 964, 1015, 1429, 1450, 1471
BseYI CCCAGC 2 cut(s) 60, 1455
BsgI GTGCAG 1 cut(s) 522
Bsh1236I CGCG 1 cut(s) 367
BshFI GGCC 2 cut(s) 1053, 1501
BshNI GGYRCC 1 cut(s) 1402
BsiHKAI GWGCWC 1 cut(s) 268
BsiHKCI CYCGRG 1 cut(s) 677
BsiSI CCGG 2 cut(s) 1498, 1515
BslFI GGGAC 2 cut(s) 158, 1229
BslI CCNNNNNNNGG 2 cut(s) 246, 1313
BsmAI GTCTC 3 cut(s) 319, 363, 1416
BsmFI GGGAC 2 cut(s) 158, 1229
BsmI GAATGC 1 cut(s) 1051
BsnI GGCC 2 cut(s) 1053, 1501
Bso31I GGTCTC 1 cut(s) 363
BsoBI CYCGRG 1 cut(s) 677
Bsp119I TTCGAA 1 cut(s) 805
Bsp1286I GDGCHC 2 cut(s) 268, 1112
Bsp143I GATC 3 cut(s) 537, 646, 1153
Bsp19I CCATGG 1 cut(s) 298
BspACI CCGC 4 cut(s) 367, 856, 954, 1382
BspANI GGCC 2 cut(s) 1053, 1501
BspCNI CTCAG 2 cut(s) 499, 1426
BspFNI CGCG 1 cut(s) 367
BspHI TCATGA 1 cut(s) 1320
BspLI GGNNCC 4 cut(s) 371, 648, 1224, 1404
BspMAI CTGCAG 3 cut(s) 207, 589, 946
BspMI ACCTGC 1 cut(s) 808
BspPI GGATC 3 cut(s) 641, 654, 1148
BspT104I TTCGAA 1 cut(s) 805
BspT107I GGYRCC 1 cut(s) 1402
BspTNI GGTCTC 1 cut(s) 363
BsrDI GCAATG 2 cut(s) 948, 1224
BsrI ACTGG 3 cut(s) 92, 798, 1145
BssECI CCNNGG 2 cut(s) 298, 411
BssMI GATC 3 cut(s) 537, 646, 1153
BssT1I CCWWGG 2 cut(s) 298, 411
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 144, 626
Bst6I CTCTTC 3 cut(s) 333, 1029, 1078
BstAPI GCANNNNNTGC 3 cut(s) 400, 950, 1423
BstBI TTCGAA 1 cut(s) 805
BstC8I GCNNGC 5 cut(s) 215, 365, 847, 975, 1051
BstDEI CTNAG 3 cut(s) 507, 1413, 1548
BstDSI CCRYGG 1 cut(s) 298
BstF5I GGATG 3 cut(s) 198, 1088, 1283
BstFNI CGCG 1 cut(s) 367
BstH2I RGCGCY 1 cut(s) 436
BstHHI GCGC 2 cut(s) 435, 1192
BstKTI GATC 3 cut(s) 540, 649, 1156
BstMAI GTCTC 3 cut(s) 319, 363, 1416
BstMBI GATC 3 cut(s) 537, 646, 1153
BstNI CCWGG 1 cut(s) 261
BstNSI RCATGY 1 cut(s) 856
BstSCI CCNGG 2 cut(s) 259, 1513
BstSFI CTRYAG 3 cut(s) 203, 585, 942
BstSLI GKGCMC 1 cut(s) 1112
BstUI CGCG 1 cut(s) 367
BstV1I GCAGC 8 cut(s) 515, 928, 956, 964, 1015, 1429, 1450, 1471
BstX2I RGATCY 2 cut(s) 646, 1153
BstYI RGATCY 2 cut(s) 646, 1153
BsuRI GGCC 2 cut(s) 1053, 1501
BtgI CCRYGG 1 cut(s) 298
BtsCI GGATG 3 cut(s) 198, 1088, 1283
BtsI GCAGTG 3 cut(s) 71, 710, 1185
BtsIMutI CAGTG 8 cut(s) 22, 71, 85, 427, 631, 710, 1110, 1185
BveI ACCTGC 1 cut(s) 808
Cac8I GCNNGC 5 cut(s) 215, 365, 847, 975, 1051
CaiI CAGNNNCTG 1 cut(s) 630
CciI TCATGA 1 cut(s) 1320
CfoI GCGC 2 cut(s) 435, 1192
Cfr13I GGNCC 2 cut(s) 1137, 1364
Csp6I GTAC 2 cut(s) 633, 1013
CviAII CATG 7 cut(s) 299, 776, 853, 1141, 1241, 1321, 1423
CviQI GTAC 2 cut(s) 633, 1013
DdeI CTNAG 3 cut(s) 507, 1413, 1548
DpnI GATC 3 cut(s) 539, 648, 1155
DpnII GATC 3 cut(s) 537, 646, 1153
DraIII CACNNNGTG 1 cut(s) 535
EaeI YGGCCR 1 cut(s) 1499
Eam1104I CTCTTC 3 cut(s) 333, 1029, 1078
EarI CTCTTC 3 cut(s) 333, 1029, 1078
Ecl136II GAGCTC 1 cut(s) 266
Eco130I CCWWGG 2 cut(s) 298, 411
Eco24I GRGCYC 1 cut(s) 268
Eco31I GGTCTC 1 cut(s) 363
Eco47I GGWCC 2 cut(s) 1137, 1364
Eco47III AGCGCT 1 cut(s) 434
Eco53kI GAGCTC 1 cut(s) 266
Eco57I CTGAAG 2 cut(s) 1053, 1490
Eco88I CYCGRG 1 cut(s) 677
EcoICRI GAGCTC 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 2 cut(s) 298, 411
EcoT38I GRGCYC 1 cut(s) 268
ErhI CCWWGG 2 cut(s) 298, 411
FaeI CATG 7 cut(s) 302, 779, 856, 1144, 1244, 1324, 1426
FalI AAGNNNNNCTT 2 cut(s) 754, 786
FaqI GGGAC 2 cut(s) 158, 1229
FatI CATG 7 cut(s) 298, 775, 852, 1140, 1240, 1320, 1422
FauNDI CATATG 3 cut(s) 813, 1269, 1386
Fnu4HI GCNGC 9 cut(s) 504, 942, 945, 954, 978, 1029, 1418, 1439, 1460
FokI GGATG 3 cut(s) 185, 1075, 1270
FriOI GRGCYC 1 cut(s) 268
Fsp4HI GCNGC 9 cut(s) 504, 942, 945, 954, 978, 1029, 1418, 1439, 1460
FspBI CTAG 4 cut(s) 318, 984, 1361, 1491
GlaI GCGC 2 cut(s) 434, 1191
GluI GCNGC 9 cut(s) 504, 942, 945, 954, 978, 1029, 1418, 1439, 1460
GsaI CCCAGC 2 cut(s) 64, 1459
GsuI CTGGAG 1 cut(s) 815
HaeII RGCGCY 1 cut(s) 436
HaeIII GGCC 2 cut(s) 1053, 1501
HapII CCGG 2 cut(s) 1498, 1515
HhaI GCGC 2 cut(s) 435, 1192
Hin1II CATG 7 cut(s) 302, 779, 856, 1144, 1244, 1324, 1426
Hin6I GCGC 2 cut(s) 433, 1190
HinP1I GCGC 2 cut(s) 433, 1190
HincII GTYRAC 2 cut(s) 622, 1173
HindII GTYRAC 2 cut(s) 622, 1173
HindIII AAGCTT 2 cut(s) 768, 971
HinfI GANTC 4 cut(s) 464, 785, 1115, 1237
HpaII CCGG 2 cut(s) 1498, 1515
HphI GGTGA 4 cut(s) 302, 547, 554, 584
Hpy166II GTNNAC 4 cut(s) 592, 622, 1173, 1336
Hpy188I TCNGA 5 cut(s) 105, 449, 479, 790, 1153
Hpy188III TCNNGA 3 cut(s) 318, 1311, 1321
Hpy8I GTNNAC 4 cut(s) 592, 622, 1173, 1336
HpyAV CCTTC 3 cut(s) 244, 281, 1544
HpyCH4III ACNGT 2 cut(s) 144, 626
HpyCH4IV ACGT 2 cut(s) 131, 439
HpyF3I CTNAG 3 cut(s) 507, 1413, 1548
HpySE526I ACGT 2 cut(s) 131, 439
Hsp92II CATG 7 cut(s) 302, 779, 856, 1144, 1244, 1324, 1426
HspAI GCGC 2 cut(s) 433, 1190
Kzo9I GATC 3 cut(s) 537, 646, 1153
LmnI GCTCC 4 cut(s) 105, 263, 369, 992
Lsp1109I GCAGC 8 cut(s) 515, 928, 956, 964, 1015, 1429, 1450, 1471
LweI GCATC 2 cut(s) 550, 895
MaeI CTAG 4 cut(s) 318, 984, 1361, 1491
MaeII ACGT 2 cut(s) 131, 439
MaeIII GTNAC 3 cut(s) 81, 124, 235
MalI GATC 3 cut(s) 539, 648, 1155
MboI GATC 3 cut(s) 537, 646, 1153
MflI RGATCY 2 cut(s) 646, 1153
MhlI GDGCHC 2 cut(s) 268, 1112
MmeI TCCRAC 1 cut(s) 588
MroXI GAANNNNTTC 1 cut(s) 143
MseI TTAA 6 cut(s) 270, 279, 720, 761, 888, 1475
MslI CAYNNNNRTG 2 cut(s) 88, 1427
MspA1I CMGCKG 1 cut(s) 506
MspI CCGG 2 cut(s) 1498, 1515
MspR9I CCNGG 2 cut(s) 261, 1515
Mva1269I GAATGC 1 cut(s) 1051
MvaI CCWGG 1 cut(s) 261
MvnI CGCG 1 cut(s) 367
NciI CCSGG 1 cut(s) 1515
NcoI CCATGG 1 cut(s) 298
NdeI CATATG 3 cut(s) 813, 1269, 1386
NdeII GATC 3 cut(s) 537, 646, 1153
NlaIII CATG 7 cut(s) 302, 779, 856, 1144, 1244, 1324, 1426
NlaIV GGNNCC 4 cut(s) 371, 648, 1224, 1404
NmeAIII GCCGAG 1 cut(s) 589
NmuCI GTSAC 1 cut(s) 81
NspI RCATGY 1 cut(s) 856
NspV TTCGAA 1 cut(s) 805
OliI CACNNNNGTG 1 cut(s) 88
PaeR7I CTCGAG 1 cut(s) 677
PagI TCATGA 1 cut(s) 1320
PaqCI CACCTGC 1 cut(s) 808
PctI GAATGC 1 cut(s) 1051
PdmI GAANNNNTTC 1 cut(s) 143
PfeI GAWTC 4 cut(s) 464, 785, 1115, 1237
PfoI TCCNGGA 1 cut(s) 259
PkrI GCNGC 9 cut(s) 505, 943, 946, 955, 979, 1030, 1419, 1440, 1461
PshBI ATTAAT 1 cut(s) 279
Psp124BI GAGCTC 1 cut(s) 268
Psp6I CCWGG 1 cut(s) 259
PspFI CCCAGC 2 cut(s) 60, 1455
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 4 cut(s) 371, 648, 1224, 1404
PspPI GGNCC 2 cut(s) 1137, 1364
PspXI VCTCGAGB 1 cut(s) 677
PstI CTGCAG 3 cut(s) 207, 589, 946
PstNI CAGNNNCTG 1 cut(s) 630
PsuI RGATCY 2 cut(s) 646, 1153
PvuII CAGCTG 1 cut(s) 506
RsaI GTAC 2 cut(s) 634, 1014
RsaNI GTAC 2 cut(s) 633, 1013
RseI CAYNNNNRTG 2 cut(s) 88, 1427
SacI GAGCTC 1 cut(s) 268
SaqAI TTAA 6 cut(s) 270, 279, 720, 761, 888, 1475
SatI GCNGC 9 cut(s) 504, 942, 945, 954, 978, 1029, 1418, 1439, 1460
Sau3AI GATC 3 cut(s) 537, 646, 1153
Sau96I GGNCC 2 cut(s) 1137, 1364
ScrFI CCNGG 2 cut(s) 261, 1515
SduI GDGCHC 2 cut(s) 268, 1112
SfaNI GCATC 2 cut(s) 550, 895
SfcI CTRYAG 3 cut(s) 203, 585, 942
Sfr274I CTCGAG 1 cut(s) 677
SfuI TTCGAA 1 cut(s) 805
SinI GGWCC 2 cut(s) 1137, 1364
SlaI CTCGAG 1 cut(s) 677
SmiMI CAYNNNNRTG 2 cut(s) 88, 1427
SmlI CTYRAG 1 cut(s) 677
SmoI CTYRAG 1 cut(s) 677
SsiI CCGC 4 cut(s) 367, 856, 954, 1382
SspI AATATT 1 cut(s) 1298
SspMI CTAG 4 cut(s) 318, 984, 1361, 1491
SstI GAGCTC 1 cut(s) 268
StyD4I CCNGG 2 cut(s) 259, 1513
StyI CCWWGG 2 cut(s) 298, 411
TaaI ACNGT 2 cut(s) 144, 626
TaiI ACGT 2 cut(s) 134, 442
TaqI TCGA 3 cut(s) 72, 678, 805
TatI WGTACW 2 cut(s) 632, 1012
TauI GCSGC 1 cut(s) 956
TfiI GAWTC 4 cut(s) 464, 785, 1115, 1237
Tru1I TTAA 6 cut(s) 270, 279, 720, 761, 888, 1475
Tru9I TTAA 6 cut(s) 270, 279, 720, 761, 888, 1475
TscAI CASTG 8 cut(s) 22, 71, 92, 427, 631, 710, 1117, 1192
TseFI GTSAC 1 cut(s) 81
TseI GCWGC 8 cut(s) 503, 941, 944, 977, 1028, 1417, 1438, 1459
Tsp45I GTSAC 1 cut(s) 81
TspGWI ACGGA 1 cut(s) 670
TspRI CASTG 8 cut(s) 22, 71, 92, 427, 631, 710, 1117, 1192
VpaK11BI GGWCC 2 cut(s) 1137, 1364
VspI ATTAAT 1 cut(s) 279
XapI RAATTY 1 cut(s) 230
XbaI TCTAGA 1 cut(s) 317
XceI RCATGY 1 cut(s) 856
XcmI CCANNNNNNNNNTGG 1 cut(s) 955
XhoI CTCGAG 1 cut(s) 677
XmnI GAANNNNTTC 1 cut(s) 143
XspI CTAG 4 cut(s) 318, 984, 1361, 1491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.