Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0010009

Physical Location & Seq

Genomic Coordinates Forward (+)

28658818 .. 28663431

Gene Structure 4614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG266800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGCTTGGGCAAGAAGTGCCTCCACCCTTGGAGTTCAGTGGCAAAAAGCGCTCACGTTCAGTCAGAATTATGAAAAGAGATTCACGCTCTATCAGAACGAAACTTTCCATTGGAGGTGCAGCTGAGAAGATTGTATCGGCATTTCACTTGGTGATCGGTGAAAATCCAAATGAAGATGCCGAGATGAGTAAATGCAAGTCTGCAGTTCACCAAGTAAGGAAGTTGGAAAAAGATGTTGACAGTGCCTGTGCTACTGCAAAGGATCCAAAACGGAAAAGTTTAGCAAAAGAACTCGAGGAGGAAGAAAATGTGTTGAAGCAGTGTTTTGAGAAACTTAAATCAGTTGAAGCGAGTAGAGTAGCACTTGTATCTCAATTAAGAGAAGCTTTGCATGAACAGGAATCCGAACTGGAGAATGTTCGAACTCATATGCAGGTGGCACAAGCACAGGCAGAAGAAGCCAGCAACATGCGGAAACGGCTAAATGATGAAGATTATATATTTAATCCATCAAGTGCTGATGCAAATTCCAAAGGAGGACACACACCAAAGAAGTCTGCTGCAGCCATTGCAGCTTTGGTTGCAGACAAGCTTGCTGCTTCTAGTTCCTCTCAACTAATTATGACTTCTGTTCTTTCTACTTTTGCTGCTGAAGAGGCGAAGAATGCTGGCCTGACCAAGCCCTCCACCTCTTCCAATTCATACCCATCCACGCCAAAGAGTTCGGGCACTGATTCAATGTCTAAACCTGAAAGGTCCGTGCCAGTTTCAGATCCCAATGTTTTTATGTCAACACAGCCACCCGCTGCGCCTCCAAACCACTCTTACCAATCAGCAATGGTTCCACAACAGCAGAATCATGTCCCAACCTCACAAGCTCAATTTCATATGCTTCAAAACCCATCCTCACAACAATATTTACAGCCATCAGGAGGTGTCATGAGCCAATATGTTTACGGGAACATTCCACCTTTGCCTCTAGGACCACCACCACCCCCACCGCATATGGTAAGTCCAATGGTGCCAATGTCTCAGCAGCCCATGCAAATGAACCAGCAGCCCTCACCAATTACCCAGCAGCAACAAATACCCTTAATTCAACAACCTCCTAGTTTCCGGCCACTTCAGCCACCAGGAATGGTGTATTATAGCCTTCCTCATCATTCTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

390

Amino Acids

42.6

Weight (kDa)

8.78

Isoelectric Point (pI)

66.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10060 AT5G65180 AT5G65180
fragaria_vesca	FvH4_1g21760 FvH4_1g21760
malus_domestica	MD01G1022500.v1.1 MD15G1330000.v1.1
prunus_persica	Prupe.6G178300_v2.0.a1
pyrus_communis	pycom01g05100 pycom15g29550
rosa_chinensis	RchiOBHm_Chr2g0115631
rosa_laevigata	RLG00000018199
rosa_roxburghii	Rroxscaffold_2G00128040 Rroxscaffold_2G00128910
rosa_rugosa	Rorug02G0198800 Rorug02G0198900
rosa_samantha	Rh2AG256000 Rh2BG266800 Rh2CG261400 Rh2DG264300
rosa_wichuraiana	Rw2G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	424
Acc36I	ACCTGC	1 cut(s)	424
AccB1I	GGYRCC	1 cut(s)	1021
AciI	CCGC	3 cut(s)	472, 804, 1001
AclWI	GGATC	3 cut(s)	257, 270, 767
AcoI	YGGCCR	1 cut(s)	1118
AcsI	RAATTY	1 cut(s)	526
AcuI	CTGAAG	2 cut(s)	672, 1109
AdeI	CACNNNGTG	1 cut(s)	151
AfeI	AGCGCT	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	932
AgsI	TTSAA	5 cut(s)	316, 347, 738, 896, 1100
AjnI	CCWGG	1 cut(s)	1132
AluBI	AGCT	5 cut(s)	122, 386, 575, 592, 878
AluI	AGCT	5 cut(s)	122, 386, 575, 592, 878
Alw26I	GTCTC	1 cut(s)	1035
AlwI	GGATC	3 cut(s)	257, 270, 767
AlwNI	CAGNNNCTG	1 cut(s)	246
Ama87I	CYCGRG	1 cut(s)	293
Aor51HI	AGCGCT	1 cut(s)	50
AoxI	GGCC	2 cut(s)	670, 1118
ApoI	RAATTY	1 cut(s)	526
AspLEI	GCGC	2 cut(s)	51, 811
AspS9I	GGNCC	2 cut(s)	756, 983
AsuHPI	GGTGA	4 cut(s)	163, 170, 200, 1056
AsuII	TTCGAA	1 cut(s)	421
AvaI	CYCGRG	1 cut(s)	293
AvaII	GGWCC	2 cut(s)	756, 983
BaeGI	GKGCMC	1 cut(s)	731
BamHI	GGATCC	1 cut(s)	262
BanI	GGYRCC	1 cut(s)	1021
BccI	CCATC	4 cut(s)	517, 715, 910, 934
BceAI	ACGGC	1 cut(s)	494
BciT130I	CCWGG	1 cut(s)	1134
BcoDI	GTCTC	1 cut(s)	1035
BfaI	CTAG	3 cut(s)	603, 980, 1110
BfmI	CTRYAG	2 cut(s)	201, 561
BfoI	RGCGCY	1 cut(s)	52
BfuAI	ACCTGC	1 cut(s)	424
Bme1390I	CCNGG	1 cut(s)	1134
Bme18I	GGWCC	2 cut(s)	756, 983
BmeT110I	CYCGRG	1 cut(s)	293
BmgT120I	GGNCC	2 cut(s)	756, 983
BmiI	GGNNCC	3 cut(s)	264, 843, 1023
BmrFI	CCNGG	1 cut(s)	1134
BmsI	GCATC	2 cut(s)	166, 511
BpmI	CTGGAG	1 cut(s)	431
Bpu14I	TTCGAA	1 cut(s)	421
BsaJI	CCNNGG	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	932
Bse1I	ACTGG	2 cut(s)	414, 764
Bse3DI	GCAATG	2 cut(s)	567, 843
BseBI	CCWGG	1 cut(s)	1134
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	707, 902
BseLI	CCNNNNNNNGG	1 cut(s)	932
BseMI	GCAATG	2 cut(s)	567, 843
BseMII	CTCAG	2 cut(s)	114, 1046
BseNI	ACTGG	2 cut(s)	414, 764
BseRI	GAGGAG	1 cut(s)	311
BseSI	GKGCMC	1 cut(s)	731
BseYI	CCCAGC	1 cut(s)	1074
BsgI	GTGCAG	1 cut(s)	138
BshFI	GGCC	2 cut(s)	672, 1120
BshNI	GGYRCC	1 cut(s)	1021
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	1 cut(s)	1117
BslFI	GGGAC	1 cut(s)	848
BslI	CCNNNNNNNGG	1 cut(s)	932
BsmAI	GTCTC	1 cut(s)	1035
BsmFI	GGGAC	1 cut(s)	848
BsmI	GAATGC	1 cut(s)	670
BsnI	GGCC	2 cut(s)	672, 1120
BsoBI	CYCGRG	1 cut(s)	293
Bsp119I	TTCGAA	1 cut(s)	421
Bsp1286I	GDGCHC	1 cut(s)	731
Bsp143I	GATC	3 cut(s)	153, 262, 772
BspACI	CCGC	3 cut(s)	472, 804, 1001
BspANI	GGCC	2 cut(s)	672, 1120
BspCNI	CTCAG	2 cut(s)	115, 1045
BspHI	TCATGA	1 cut(s)	939
BspLI	GGNNCC	3 cut(s)	264, 843, 1023
BspMAI	CTGCAG	2 cut(s)	205, 565
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	3 cut(s)	257, 270, 767
BspT104I	TTCGAA	1 cut(s)	421
BspT107I	GGYRCC	1 cut(s)	1021
BsrDI	GCAATG	2 cut(s)	567, 843
BsrI	ACTGG	2 cut(s)	414, 764
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	3 cut(s)	153, 262, 772
BssT1I	CCWWGG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	1134
Bst4CI	ACNGT	1 cut(s)	242
Bst6I	CTCTTC	2 cut(s)	648, 697
BstAPI	GCANNNNNTGC	3 cut(s)	16, 569, 1042
BstBI	TTCGAA	1 cut(s)	421
BstC8I	GCNNGC	3 cut(s)	463, 594, 670
BstDEI	CTNAG	3 cut(s)	123, 1032, 1167
BstF5I	GGATG	2 cut(s)	707, 902
BstH2I	RGCGCY	1 cut(s)	52
BstHHI	GCGC	2 cut(s)	51, 811
BstKTI	GATC	3 cut(s)	156, 265, 775
BstMAI	GTCTC	1 cut(s)	1035
BstMBI	GATC	3 cut(s)	153, 262, 772
BstNI	CCWGG	1 cut(s)	1134
BstNSI	RCATGY	1 cut(s)	472
BstSCI	CCNGG	1 cut(s)	1132
BstSFI	CTRYAG	2 cut(s)	201, 561
BstSLI	GKGCMC	1 cut(s)	731
BstX2I	RGATCY	2 cut(s)	262, 772
BstYI	RGATCY	2 cut(s)	262, 772
BsuRI	GGCC	2 cut(s)	672, 1120
BtsCI	GGATG	2 cut(s)	707, 902
BtsI	GCAGTG	1 cut(s)	326
BtsIMutI	CAGTG	4 cut(s)	43, 247, 326, 729
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	3 cut(s)	463, 594, 670
CaiI	CAGNNNCTG	1 cut(s)	246
CciI	TCATGA	1 cut(s)	939
CfoI	GCGC	2 cut(s)	51, 811
Cfr13I	GGNCC	2 cut(s)	756, 983
CviAII	CATG	5 cut(s)	392, 469, 860, 940, 1042
DdeI	CTNAG	3 cut(s)	123, 1032, 1167
DpnI	GATC	3 cut(s)	155, 264, 774
DpnII	GATC	3 cut(s)	153, 262, 772
DraIII	CACNNNGTG	1 cut(s)	151
EaeI	YGGCCR	1 cut(s)	1118
Eam1104I	CTCTTC	2 cut(s)	648, 697
EarI	CTCTTC	2 cut(s)	648, 697
Eco130I	CCWWGG	1 cut(s)	27
Eco47I	GGWCC	2 cut(s)	756, 983
Eco47III	AGCGCT	1 cut(s)	50
Eco57I	CTGAAG	2 cut(s)	672, 1109
Eco88I	CYCGRG	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	1132
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	5 cut(s)	395, 472, 863, 943, 1045
FalI	AAGNNNNNCTT	2 cut(s)	370, 402
FaqI	GGGAC	1 cut(s)	848
FatI	CATG	5 cut(s)	391, 468, 859, 939, 1041
FauI	CCCGC	1 cut(s)	811
FauNDI	CATATG	3 cut(s)	429, 888, 1005
FokI	GGATG	2 cut(s)	694, 889
FspBI	CTAG	3 cut(s)	603, 980, 1110
GlaI	GCGC	2 cut(s)	50, 810
GsaI	CCCAGC	1 cut(s)	1078
GsuI	CTGGAG	1 cut(s)	431
HaeII	RGCGCY	1 cut(s)	52
HaeIII	GGCC	2 cut(s)	672, 1120
HapII	CCGG	1 cut(s)	1117
HhaI	GCGC	2 cut(s)	51, 811
Hin1II	CATG	5 cut(s)	395, 472, 863, 943, 1045
Hin6I	GCGC	2 cut(s)	49, 809
HinP1I	GCGC	2 cut(s)	49, 809
HincII	GTYRAC	2 cut(s)	238, 792
HindII	GTYRAC	2 cut(s)	238, 792
HindIII	AAGCTT	2 cut(s)	384, 590
HinfI	GANTC	4 cut(s)	80, 401, 734, 856
HpaII	CCGG	1 cut(s)	1117
HphI	GGTGA	4 cut(s)	163, 170, 200, 1056
Hpy166II	GTNNAC	4 cut(s)	208, 238, 792, 955
Hpy188I	TCNGA	4 cut(s)	65, 95, 406, 772
Hpy188III	TCNNGA	2 cut(s)	930, 940
Hpy8I	GTNNAC	4 cut(s)	208, 238, 792, 955
HpyAV	CCTTC	1 cut(s)	1163
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4IV	ACGT	1 cut(s)	55
HpyF3I	CTNAG	3 cut(s)	123, 1032, 1167
HpySE526I	ACGT	1 cut(s)	55
Hsp92II	CATG	5 cut(s)	395, 472, 863, 943, 1045
HspAI	GCGC	2 cut(s)	49, 809
Kzo9I	GATC	3 cut(s)	153, 262, 772
LweI	GCATC	2 cut(s)	166, 511
MaeI	CTAG	3 cut(s)	603, 980, 1110
MaeII	ACGT	1 cut(s)	55
MalI	GATC	3 cut(s)	155, 264, 774
MboI	GATC	3 cut(s)	153, 262, 772
MboII	GAAGA	8 cut(s)	139, 185, 314, 467, 503, 665, 673, 684
MflI	RGATCY	2 cut(s)	262, 772
MhlI	GDGCHC	1 cut(s)	731
MluCI	AATT	8 cut(s)	66, 374, 526, 618, 697, 881, 1068, 1095
MmeI	TCCRAC	1 cut(s)	204
MseI	TTAA	4 cut(s)	336, 377, 504, 1094
MslI	CAYNNNNRTG	1 cut(s)	1046
MspA1I	CMGCKG	2 cut(s)	122, 806
MspI	CCGG	1 cut(s)	1117
MspR9I	CCNGG	1 cut(s)	1134
Mva1269I	GAATGC	1 cut(s)	670
MvaI	CCWGG	1 cut(s)	1134
NdeI	CATATG	3 cut(s)	429, 888, 1005
NdeII	GATC	3 cut(s)	153, 262, 772
NlaIII	CATG	5 cut(s)	395, 472, 863, 943, 1045
NlaIV	GGNNCC	3 cut(s)	264, 843, 1023
NmeAIII	GCCGAG	1 cut(s)	205
NspI	RCATGY	1 cut(s)	472
NspV	TTCGAA	1 cut(s)	421
PaeR7I	CTCGAG	1 cut(s)	293
PagI	TCATGA	1 cut(s)	939
PaqCI	CACCTGC	1 cut(s)	424
PctI	GAATGC	1 cut(s)	670
PfeI	GAWTC	4 cut(s)	80, 401, 734, 856
Psp6I	CCWGG	1 cut(s)	1132
PspFI	CCCAGC	1 cut(s)	1074
PspGI	CCWGG	1 cut(s)	1132
PspN4I	GGNNCC	3 cut(s)	264, 843, 1023
PspPI	GGNCC	2 cut(s)	756, 983
PspXI	VCTCGAGB	1 cut(s)	293
PstI	CTGCAG	2 cut(s)	205, 565
PstNI	CAGNNNCTG	1 cut(s)	246
PsuI	RGATCY	2 cut(s)	262, 772
PvuII	CAGCTG	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	1046
SaqAI	TTAA	4 cut(s)	336, 377, 504, 1094
Sau3AI	GATC	3 cut(s)	153, 262, 772
Sau96I	GGNCC	2 cut(s)	756, 983
ScrFI	CCNGG	1 cut(s)	1134
SduI	GDGCHC	1 cut(s)	731
SfaNI	GCATC	2 cut(s)	166, 511
SfcI	CTRYAG	2 cut(s)	201, 561
Sfr274I	CTCGAG	1 cut(s)	293
SfuI	TTCGAA	1 cut(s)	421
SinI	GGWCC	2 cut(s)	756, 983
SlaI	CTCGAG	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	1046
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	8 cut(s)	66, 374, 526, 618, 697, 881, 1068, 1095
SsiI	CCGC	3 cut(s)	472, 804, 1001
SspI	AATATT	1 cut(s)	917
SspMI	CTAG	3 cut(s)	603, 980, 1110
StyD4I	CCNGG	1 cut(s)	1132
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	242
TaiI	ACGT	1 cut(s)	58
TaqI	TCGA	2 cut(s)	294, 421
TasI	AATT	8 cut(s)	66, 374, 526, 618, 697, 881, 1068, 1095
TfiI	GAWTC	4 cut(s)	80, 401, 734, 856
Tru1I	TTAA	4 cut(s)	336, 377, 504, 1094
Tru9I	TTAA	4 cut(s)	336, 377, 504, 1094
TscAI	CASTG	4 cut(s)	43, 247, 326, 736
TspDTI	ATGAA	7 cut(s)	86, 186, 408, 504, 690, 875, 1064
TspGWI	ACGGA	2 cut(s)	286, 748
TspRI	CASTG	4 cut(s)	43, 247, 326, 736
VpaK11BI	GGWCC	2 cut(s)	756, 983
XapI	RAATTY	1 cut(s)	526
XceI	RCATGY	1 cut(s)	472
XcmI	CCANNNNNNNNNTGG	1 cut(s)	574
XhoI	CTCGAG	1 cut(s)	293
XspI	CTAG	3 cut(s)	603, 980, 1110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.