pycom15g29550

Regulation of nuclear pre-mRNA domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
26463517 .. 26468358
4842 bp
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UTR
Exon/CDS
Intron
pycom15g29550.5

Sequence Viewer

Length: 1557 bp
ATGAATAGTGTATTCACTGAGCAGATACTTGCAGACAAGCTCTCCAAGGTCAACAGCACCCAGCAATGCATTGAAACTTTGTCACATTGGTGTATATTTCACCGGAGCAAAGCGGAACTGGTTGTCGCAACATGGGATAAACAATTCCGTAGTGCACAGATGGTTCAGAAAGTTCCTCTCTTGTATCTTGCAAATGACATCCTGCAGAACAGTAAGCGGAAAGGAAATGAATTTGTTACTGAGTTTTGGAAGGTTCTTCCAGCAGCTCTCAAAGTTGTTCACGACGAAGGCGATAATCATGGAAAGAATGTTGTATCTAGATTGGTTGGTATTTGGGAAGAGAGACGAGTATTTGGGTCTCGTGCAAGGAGCCTAAAAGAAGTAATGCTTGGGGAAGAAGTGCCTCCACCGTTGGAATTCAGTGGCAAAAAGCGCCCTCGTTCAGTCAGAATTGTAAAAAGAGATTCACGCTCTATCAGAACGAAACTTTCTATTGGAGGTCCAGCTGAGAAGATTGTATCCGCATTTCACTTGGTGATCGATCATCCCACTGAAGATGCTGAGATGAGTAAATGCAAGTCTGCAGCTCACCGTGTAAGGAAGTTGGAGAAAGATGTTGACATTGCCTGTACTAATGCTAAAGATCCAAAGCGGGAAACTTTAGCGAAAGAACTAGAGGAGGAGGAAAATATTTTGAAGCAGTGTATCAATAAACTTAAATCAGTTGAAACCAGTAGAGTAGCACTTTTATCTCAATTAAAAGAAGCTCTGCATGATCAGGAATCTGAACTGGAGAATATTCGAACTCATATGCAGGTAGCACAGGCACAGGTAGAAGAAGCCACCAACATGCGGAAGCGGCTCAATGATGATGATTATCTGTTTAAACCATCAAGTGCGACCAGTCCATTGACTGATGCAAATTCTAAAGGCGGACAAACACCTAGGAAATCAGCAGCAGCCATTGCAGCTTTGGTTGCTGACAAGCTTGCTGCTTCTAGTTCTTCTCAATCGATTATGACTTCAGTTCTTTCAACATTTGCTGCTGAAGAAGCGAAGAATGCTGGTTTGACAAAGCCCTCCACGTCTATGCCCCAAAGTTCGGGCACTGAATCAATATCCAAACCTGAGAGGTCCATGCCCGTATCAGATGCCAATGTTTTTATGTCATCACAAGCGCCTTCTGTGCAGCCAAGCCATTCGTACCAATCAGCATTGGTTCCCCAACCGCAGAATCAAGCCCCAACCTCTCAAGGTCAATTTCACATGCTTCCAAACCCACCCTCCCAACAATATTTACAGCCATCAGGAGGGGGCATGAGCCCATATGTTTACGGTAGCATTCCACCTTTGCCTCTAGGGCCACCACCTCGCCCACCTCATATGGTGACATCAATGGTGCCTTTGGCTCAGCAGCCATTGCAAATGAATCAGCAACCTGTACAAATTAGCCAGCAGCAACCAATACCCTCAACTCAGCAGCCTCCTCCCGCTCCTAGTTTCCGGCCACTTCAGCCACCCGGAATGGTGTATTATGCTCATCATCATTCTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

519

Amino Acids

57.21

Weight (kDa)

9.13

Isoelectric Point (pI)

62.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 805
AccB1I GGYRCC 1 cut(s) 1399
AccBSI CCGCTC 1 cut(s) 1493
AciI CCGC 9 cut(s) 113, 217, 522, 652, 853, 859, 933, 1229, 1491
AclWI GGATC 1 cut(s) 638
AcoI YGGCCR 1 cut(s) 1505
AcsI RAATTY 3 cut(s) 230, 416, 922
AcuI CTGAAG 4 cut(s) 573, 1008, 1068, 1496
AdeI CACNNNGTG 1 cut(s) 535
AfaI GTAC 3 cut(s) 631, 1205, 1443
AfiI CCNNNNNNNGG 3 cut(s) 852, 1102, 1310
AgsI TTSAA 4 cut(s) 74, 697, 728, 1035
AjiI CACGTC 1 cut(s) 1086
AjuI GAANNNNNNNTTGG 2 cut(s) 372, 404
AleI CACNNNNGTG 1 cut(s) 88
AluBI AGCT 7 cut(s) 40, 266, 506, 587, 767, 971, 988
AluI AGCT 7 cut(s) 40, 266, 506, 587, 767, 971, 988
Alw21I GWGCWC 1 cut(s) 157
Alw26I GTCTC 2 cut(s) 337, 363
Alw44I GTGCAC 1 cut(s) 153
AlwI GGATC 1 cut(s) 638
AoxI GGCC 2 cut(s) 1361, 1505
ApaLI GTGCAC 1 cut(s) 153
ApoI RAATTY 3 cut(s) 230, 416, 922
AspA2I CCTAGG 1 cut(s) 944
AspLEI GCGC 2 cut(s) 435, 1180
AspS9I GGNCC 3 cut(s) 500, 1134, 1361
AsuC2I CCSGG 1 cut(s) 1521
AsuHPI GGTGA 4 cut(s) 92, 547, 581, 1399
AsuII TTCGAA 1 cut(s) 802
AvaII GGWCC 2 cut(s) 500, 1134
AvrII CCTAGG 1 cut(s) 944
BaeGI GKGCMC 2 cut(s) 157, 1109
BanI GGYRCC 1 cut(s) 1399
BanII GRGCYC 1 cut(s) 1325
BauI CACGAG 1 cut(s) 360
Bbv12I GWGCWC 1 cut(s) 157
BccI CCATC 3 cut(s) 154, 898, 1312
BciVI GTATCC 1 cut(s) 529
BclI TGATCA 1 cut(s) 775
BcnI CCSGG 1 cut(s) 1521
BcoDI GTCTC 2 cut(s) 337, 363
BfaI CTAG 6 cut(s) 318, 674, 945, 999, 1358, 1497
BfmI CTRYAG 2 cut(s) 203, 582
BfoI RGCGCY 2 cut(s) 436, 1181
BfuAI ACCTGC 1 cut(s) 805
BfuI GTATCC 1 cut(s) 529
BglI GCCNNNNNGGC 1 cut(s) 1360
BlnI CCTAGG 1 cut(s) 944
BlpI GCTNAGC 1 cut(s) 1410
Bme1390I CCNGG 1 cut(s) 1521
Bme18I GGWCC 2 cut(s) 500, 1134
BmgBI CACGTC 1 cut(s) 1086
BmgT120I GGNCC 3 cut(s) 500, 1134, 1361
BmiI GGNNCC 3 cut(s) 371, 1221, 1401
BmrFI CCNGG 1 cut(s) 1521
BmsI GCATC 3 cut(s) 547, 907, 1141
BpmI CTGGAG 1 cut(s) 812
Bpu1102I GCTNAGC 1 cut(s) 1410
Bpu14I TTCGAA 1 cut(s) 802
BpuEI CTTGAG 1 cut(s) 1236
BpuMI CCSGG 1 cut(s) 1521
Bsa29I ATCGAT 2 cut(s) 540, 1013
BsaBI GATNNNNATC 1 cut(s) 876
BsaI GGTCTC 1 cut(s) 363
BsaJI CCNNGG 2 cut(s) 45, 944
BsaWI WCCGGW 1 cut(s) 102
BsaXI ACNNNNNCTCC 4 cut(s) 26, 56, 1268, 1298
Bsc4I CCNNNNNNNGG 3 cut(s) 852, 1102, 1310
Bse1I ACTGG 4 cut(s) 123, 732, 795, 903
Bse3DI GCAATG 4 cut(s) 71, 621, 963, 1418
Bse8I GATNNNNATC 1 cut(s) 876
BseCI ATCGAT 2 cut(s) 540, 1013
BseDI CCNNGG 2 cut(s) 45, 944
BseGI GGATG 2 cut(s) 198, 544
BseJI GATNNNNATC 1 cut(s) 876
BseLI CCNNNNNNNGG 3 cut(s) 852, 1102, 1310
BseMI GCAATG 4 cut(s) 71, 621, 963, 1418
BseMII CTCAG 7 cut(s) 9, 231, 498, 552, 1119, 1424, 1490
BseNI ACTGG 4 cut(s) 123, 732, 795, 903
BseRI GAGGAG 3 cut(s) 692, 695, 1476
BseSI GKGCMC 2 cut(s) 157, 1109
BseYI CCCAGC 1 cut(s) 60
BsgI GTGCAG 1 cut(s) 1208
BshFI GGCC 2 cut(s) 1363, 1507
BshNI GGYRCC 1 cut(s) 1399
BshVI ATCGAT 2 cut(s) 540, 1013
BsiHKAI GWGCWC 1 cut(s) 157
BsiSI CCGG 3 cut(s) 103, 1504, 1521
BslI CCNNNNNNNGG 3 cut(s) 852, 1102, 1310
BsmAI GTCTC 2 cut(s) 337, 363
BsmBI CGTCTC 1 cut(s) 337
BsmI GAATGC 2 cut(s) 1066, 1341
BsnI GGCC 2 cut(s) 1363, 1507
Bso31I GGTCTC 1 cut(s) 363
Bsp119I TTCGAA 1 cut(s) 802
Bsp1286I GDGCHC 3 cut(s) 157, 1109, 1325
Bsp1407I TGTACA 1 cut(s) 1441
Bsp143I GATC 4 cut(s) 537, 541, 643, 775
Bsp1720I GCTNAGC 1 cut(s) 1410
BspACI CCGC 9 cut(s) 113, 217, 522, 652, 853, 859, 933, 1229, 1491
BspANI GGCC 2 cut(s) 1363, 1507
BspCNI CTCAG 7 cut(s) 10, 232, 499, 553, 1120, 1423, 1489
BspDI ATCGAT 2 cut(s) 540, 1013
BspLI GGNNCC 3 cut(s) 371, 1221, 1401
BspMAI CTGCAG 2 cut(s) 207, 586
BspMI ACCTGC 1 cut(s) 805
BspPI GGATC 1 cut(s) 638
BspT104I TTCGAA 1 cut(s) 802
BspT107I GGYRCC 1 cut(s) 1399
BspTNI GGTCTC 1 cut(s) 363
BsrBI CCGCTC 1 cut(s) 1493
BsrDI GCAATG 4 cut(s) 71, 621, 963, 1418
BsrGI TGTACA 1 cut(s) 1441
BsrI ACTGG 4 cut(s) 123, 732, 795, 903
BssECI CCNNGG 2 cut(s) 45, 944
BssMI GATC 4 cut(s) 537, 541, 643, 775
BssSI CACGAG 1 cut(s) 360
BssT1I CCWWGG 2 cut(s) 45, 944
Bst2BI CACGAG 1 cut(s) 360
Bst4CI ACNGT 4 cut(s) 212, 411, 593, 1337
Bst6I CTCTTC 1 cut(s) 333
BstAPI GCANNNNNTGC 2 cut(s) 965, 1420
BstAUI TGTACA 1 cut(s) 1441
BstBI TTCGAA 1 cut(s) 802
BstC8I GCNNGC 2 cut(s) 990, 1454
BstDEI CTNAG 8 cut(s) 18, 240, 507, 561, 1128, 1410, 1476, 1551
BstF5I GGATG 2 cut(s) 198, 544
BstH2I RGCGCY 2 cut(s) 436, 1181
BstHHI GCGC 2 cut(s) 435, 1180
BstKTI GATC 4 cut(s) 540, 544, 646, 778
BstMAI GTCTC 2 cut(s) 337, 363
BstMBI GATC 4 cut(s) 537, 541, 643, 775
BstNSI RCATGY 2 cut(s) 853, 1270
BstSCI CCNGG 1 cut(s) 1519
BstSFI CTRYAG 2 cut(s) 203, 582
BstSLI GKGCMC 2 cut(s) 157, 1109
BstX2I RGATCY 1 cut(s) 643
BstYI RGATCY 1 cut(s) 643
Bsu15I ATCGAT 2 cut(s) 540, 1013
BsuI GTATCC 1 cut(s) 529
BsuRI GGCC 2 cut(s) 1363, 1507
BsuTUI ATCGAT 2 cut(s) 540, 1013
BtrI CACGTC 1 cut(s) 1086
BtsCI GGATG 2 cut(s) 198, 544
BtsI GCAGTG 1 cut(s) 707
BtsIMutI CAGTG 5 cut(s) 15, 427, 549, 707, 1107
BveI ACCTGC 1 cut(s) 805
Cac8I GCNNGC 2 cut(s) 990, 1454
CfoI GCGC 2 cut(s) 435, 1180
Cfr13I GGNCC 3 cut(s) 500, 1134, 1361
ClaI ATCGAT 2 cut(s) 540, 1013
Csp6I GTAC 3 cut(s) 630, 1204, 1442
CviAII CATG 7 cut(s) 132, 299, 773, 850, 1138, 1267, 1318
CviQI GTAC 3 cut(s) 630, 1204, 1442
DdeI CTNAG 8 cut(s) 18, 240, 507, 561, 1128, 1410, 1476, 1551
DpnI GATC 4 cut(s) 539, 543, 645, 777
DpnII GATC 4 cut(s) 537, 541, 643, 775
DraI TTTAAA 1 cut(s) 886
DraIII CACNNNGTG 1 cut(s) 535
EaeI YGGCCR 1 cut(s) 1505
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
EciI GGCGGA 1 cut(s) 948
Eco130I CCWWGG 2 cut(s) 45, 944
Eco24I GRGCYC 1 cut(s) 1325
Eco31I GGTCTC 1 cut(s) 363
Eco47I GGWCC 2 cut(s) 500, 1134
Eco57I CTGAAG 4 cut(s) 573, 1008, 1068, 1496
EcoRI GAATTC 1 cut(s) 416
EcoT14I CCWWGG 2 cut(s) 45, 944
EcoT22I ATGCAT 1 cut(s) 71
EcoT38I GRGCYC 1 cut(s) 1325
ErhI CCWWGG 2 cut(s) 45, 944
Esp3I CGTCTC 1 cut(s) 337
FaeI CATG 7 cut(s) 135, 302, 776, 853, 1141, 1270, 1321
FalI AAGNNNNNCTT 2 cut(s) 372, 404
FatI CATG 7 cut(s) 131, 298, 772, 849, 1137, 1266, 1317
FauI CCCGC 2 cut(s) 645, 1498
FauNDI CATATG 3 cut(s) 810, 1327, 1383
FbaI TGATCA 1 cut(s) 775
FokI GGATG 2 cut(s) 185, 531
FriOI GRGCYC 1 cut(s) 1325
FspBI CTAG 6 cut(s) 318, 674, 945, 999, 1358, 1497
GlaI GCGC 2 cut(s) 434, 1179
GsaI CCCAGC 1 cut(s) 64
GsuI CTGGAG 1 cut(s) 812
HaeII RGCGCY 2 cut(s) 436, 1181
HaeIII GGCC 2 cut(s) 1363, 1507
HapII CCGG 3 cut(s) 103, 1504, 1521
HhaI GCGC 2 cut(s) 435, 1180
Hin1II CATG 7 cut(s) 135, 302, 776, 853, 1141, 1270, 1321
Hin6I GCGC 2 cut(s) 433, 1178
HinP1I GCGC 2 cut(s) 433, 1178
HincII GTYRAC 2 cut(s) 52, 619
HindII GTYRAC 2 cut(s) 52, 619
HindIII AAGCTT 1 cut(s) 986
HinfI GANTC 5 cut(s) 464, 782, 1112, 1234, 1429
HpaII CCGG 3 cut(s) 103, 1504, 1521
HphI GGTGA 4 cut(s) 92, 547, 581, 1399
Hpy166II GTNNAC 5 cut(s) 52, 155, 280, 619, 1333
Hpy188I TCNGA 5 cut(s) 168, 449, 479, 787, 1150
Hpy188III TCNNGA 4 cut(s) 281, 318, 779, 1308
Hpy8I GTNNAC 5 cut(s) 52, 155, 280, 619, 1333
Hpy99I CGWCG 1 cut(s) 287
HpyAV CCTTC 3 cut(s) 244, 281, 1191
HpyCH4III ACNGT 4 cut(s) 212, 411, 593, 1337
HpyCH4IV ACGT 1 cut(s) 1085
HpyF3I CTNAG 8 cut(s) 18, 240, 507, 561, 1128, 1410, 1476, 1551
HpySE526I ACGT 1 cut(s) 1085
Hsp92II CATG 7 cut(s) 135, 302, 776, 853, 1141, 1270, 1321
HspAI GCGC 2 cut(s) 433, 1178
Ksp22I TGATCA 1 cut(s) 775
Kzo9I GATC 4 cut(s) 537, 541, 643, 775
LmnI GCTCC 3 cut(s) 105, 369, 1498
LweI GCATC 3 cut(s) 547, 907, 1141
MaeI CTAG 6 cut(s) 318, 674, 945, 999, 1358, 1497
MaeII ACGT 1 cut(s) 1085
MaeIII GTNAC 3 cut(s) 81, 235, 1387
MalI GATC 4 cut(s) 539, 543, 645, 777
MbiI CCGCTC 1 cut(s) 1493
MboI GATC 4 cut(s) 537, 541, 643, 775
MboII GAAGA 9 cut(s) 248, 350, 407, 523, 566, 848, 996, 1061, 1069
MflI RGATCY 1 cut(s) 643
MhlI GDGCHC 3 cut(s) 157, 1109, 1325
MluCI AATT 8 cut(s) 143, 230, 416, 450, 755, 922, 1259, 1446
MmeI TCCRAC 2 cut(s) 393, 585
Mph1103I ATGCAT 1 cut(s) 71
MseI TTAA 3 cut(s) 717, 758, 885
MslI CAYNNNNRTG 3 cut(s) 88, 848, 1088
MspA1I CMGCKG 1 cut(s) 506
MspI CCGG 3 cut(s) 103, 1504, 1521
MspR9I CCNGG 1 cut(s) 1521
MssI GTTTAAAC 1 cut(s) 886
Mva1269I GAATGC 2 cut(s) 1066, 1341
NciI CCSGG 1 cut(s) 1521
NdeI CATATG 3 cut(s) 810, 1327, 1383
NdeII GATC 4 cut(s) 537, 541, 643, 775
NlaIII CATG 7 cut(s) 135, 302, 776, 853, 1141, 1270, 1321
NlaIV GGNNCC 3 cut(s) 371, 1221, 1401
NmuCI GTSAC 2 cut(s) 81, 1387
NsiI ATGCAT 1 cut(s) 71
NspI RCATGY 2 cut(s) 853, 1270
NspV TTCGAA 1 cut(s) 802
OliI CACNNNNGTG 1 cut(s) 88
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PctI GAATGC 2 cut(s) 1066, 1341
PfeI GAWTC 5 cut(s) 464, 782, 1112, 1234, 1429
PmeI GTTTAAAC 1 cut(s) 886
PspFI CCCAGC 1 cut(s) 60
PspN4I GGNNCC 3 cut(s) 371, 1221, 1401
PspPI GGNCC 3 cut(s) 500, 1134, 1361
PstI CTGCAG 2 cut(s) 207, 586
PsuI RGATCY 1 cut(s) 643
PvuII CAGCTG 1 cut(s) 506
RsaI GTAC 3 cut(s) 631, 1205, 1443
RsaNI GTAC 3 cut(s) 630, 1204, 1442
RseI CAYNNNNRTG 3 cut(s) 88, 848, 1088
SaqAI TTAA 3 cut(s) 717, 758, 885
Sau3AI GATC 4 cut(s) 537, 541, 643, 775
Sau96I GGNCC 3 cut(s) 500, 1134, 1361
ScrFI CCNGG 1 cut(s) 1521
SduI GDGCHC 3 cut(s) 157, 1109, 1325
SfaNI GCATC 3 cut(s) 547, 907, 1141
SfcI CTRYAG 2 cut(s) 203, 582
SfuI TTCGAA 1 cut(s) 802
SinI GGWCC 2 cut(s) 500, 1134
SmiMI CAYNNNNRTG 3 cut(s) 88, 848, 1088
SmlI CTYRAG 1 cut(s) 1251
SmoI CTYRAG 1 cut(s) 1251
Sse9I AATT 8 cut(s) 143, 230, 416, 450, 755, 922, 1259, 1446
SsiI CCGC 9 cut(s) 113, 217, 522, 652, 853, 859, 933, 1229, 1491
SspI AATATT 3 cut(s) 691, 799, 1295
SspMI CTAG 6 cut(s) 318, 674, 945, 999, 1358, 1497
StyD4I CCNGG 1 cut(s) 1519
StyI CCWWGG 2 cut(s) 45, 944
TaaI ACNGT 4 cut(s) 212, 411, 593, 1337
TaiI ACGT 1 cut(s) 1088
TaqI TCGA 3 cut(s) 540, 802, 1013
TasI AATT 8 cut(s) 143, 230, 416, 450, 755, 922, 1259, 1446
TatI WGTACW 2 cut(s) 629, 1441
TauI GCSGC 1 cut(s) 862
TfiI GAWTC 5 cut(s) 464, 782, 1112, 1234, 1429
Tru1I TTAA 3 cut(s) 717, 758, 885
Tru9I TTAA 3 cut(s) 717, 758, 885
TscAI CASTG 5 cut(s) 22, 427, 556, 707, 1114
TseFI GTSAC 2 cut(s) 81, 1387
Tsp45I GTSAC 2 cut(s) 81, 1387
TspDTI ATGAA 3 cut(s) 17, 243, 1442
TspGWI ACGGA 1 cut(s) 137
TspRI CASTG 5 cut(s) 22, 427, 556, 707, 1114
VneI GTGCAC 1 cut(s) 153
VpaK11BI GGWCC 2 cut(s) 500, 1134
XapI RAATTY 3 cut(s) 230, 416, 922
XbaI TCTAGA 1 cut(s) 317
XceI RCATGY 2 cut(s) 853, 1270
XcmI CCANNNNNNNNNTGG 1 cut(s) 970
XmaJI CCTAGG 1 cut(s) 944
XspI CTAG 6 cut(s) 318, 674, 945, 999, 1358, 1497
Zsp2I ATGCAT 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.