Regulation of nuclear pre-mRNA domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G10060 AT5G65180 AT5G65180 |
| fragaria_vesca | FvH4_1g21760 FvH4_1g21760 |
| malus_domestica | MD01G1022500.v1.1 MD15G1330000.v1.1 |
| prunus_persica | Prupe.6G178300_v2.0.a1 |
| pyrus_communis | pycom01g05100 pycom15g29550 |
| rosa_chinensis | RchiOBHm_Chr2g0115631 |
| rosa_laevigata | RLG00000018199 |
| rosa_roxburghii | Rroxscaffold_2G00128040 Rroxscaffold_2G00128910 |
| rosa_rugosa | Rorug02G0198800 Rorug02G0198900 |
| rosa_samantha | Rh2AG256000 Rh2BG266800 Rh2CG261400 Rh2DG264300 |
| rosa_wichuraiana | Rw2G020040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 805 |
| AccB1I | GGYRCC | 1 cut(s) | 1399 |
| AccBSI | CCGCTC | 1 cut(s) | 1493 |
| AciI | CCGC | 9 cut(s) | 113, 217, 522, 652, 853, 859, 933, 1229, 1491 |
| AclWI | GGATC | 1 cut(s) | 638 |
| AcoI | YGGCCR | 1 cut(s) | 1505 |
| AcsI | RAATTY | 3 cut(s) | 230, 416, 922 |
| AcuI | CTGAAG | 4 cut(s) | 573, 1008, 1068, 1496 |
| AdeI | CACNNNGTG | 1 cut(s) | 535 |
| AfaI | GTAC | 3 cut(s) | 631, 1205, 1443 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 852, 1102, 1310 |
| AgsI | TTSAA | 4 cut(s) | 74, 697, 728, 1035 |
| AjiI | CACGTC | 1 cut(s) | 1086 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 372, 404 |
| AleI | CACNNNNGTG | 1 cut(s) | 88 |
| AluBI | AGCT | 7 cut(s) | 40, 266, 506, 587, 767, 971, 988 |
| AluI | AGCT | 7 cut(s) | 40, 266, 506, 587, 767, 971, 988 |
| Alw21I | GWGCWC | 1 cut(s) | 157 |
| Alw26I | GTCTC | 2 cut(s) | 337, 363 |
| Alw44I | GTGCAC | 1 cut(s) | 153 |
| AlwI | GGATC | 1 cut(s) | 638 |
| AoxI | GGCC | 2 cut(s) | 1361, 1505 |
| ApaLI | GTGCAC | 1 cut(s) | 153 |
| ApoI | RAATTY | 3 cut(s) | 230, 416, 922 |
| AspA2I | CCTAGG | 1 cut(s) | 944 |
| AspLEI | GCGC | 2 cut(s) | 435, 1180 |
| AspS9I | GGNCC | 3 cut(s) | 500, 1134, 1361 |
| AsuC2I | CCSGG | 1 cut(s) | 1521 |
| AsuHPI | GGTGA | 4 cut(s) | 92, 547, 581, 1399 |
| AsuII | TTCGAA | 1 cut(s) | 802 |
| AvaII | GGWCC | 2 cut(s) | 500, 1134 |
| AvrII | CCTAGG | 1 cut(s) | 944 |
| BaeGI | GKGCMC | 2 cut(s) | 157, 1109 |
| BanI | GGYRCC | 1 cut(s) | 1399 |
| BanII | GRGCYC | 1 cut(s) | 1325 |
| BauI | CACGAG | 1 cut(s) | 360 |
| Bbv12I | GWGCWC | 1 cut(s) | 157 |
| BccI | CCATC | 3 cut(s) | 154, 898, 1312 |
| BciVI | GTATCC | 1 cut(s) | 529 |
| BclI | TGATCA | 1 cut(s) | 775 |
| BcnI | CCSGG | 1 cut(s) | 1521 |
| BcoDI | GTCTC | 2 cut(s) | 337, 363 |
| BfaI | CTAG | 6 cut(s) | 318, 674, 945, 999, 1358, 1497 |
| BfmI | CTRYAG | 2 cut(s) | 203, 582 |
| BfoI | RGCGCY | 2 cut(s) | 436, 1181 |
| BfuAI | ACCTGC | 1 cut(s) | 805 |
| BfuI | GTATCC | 1 cut(s) | 529 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1360 |
| BlnI | CCTAGG | 1 cut(s) | 944 |
| BlpI | GCTNAGC | 1 cut(s) | 1410 |
| Bme1390I | CCNGG | 1 cut(s) | 1521 |
| Bme18I | GGWCC | 2 cut(s) | 500, 1134 |
| BmgBI | CACGTC | 1 cut(s) | 1086 |
| BmgT120I | GGNCC | 3 cut(s) | 500, 1134, 1361 |
| BmiI | GGNNCC | 3 cut(s) | 371, 1221, 1401 |
| BmrFI | CCNGG | 1 cut(s) | 1521 |
| BmsI | GCATC | 3 cut(s) | 547, 907, 1141 |
| BpmI | CTGGAG | 1 cut(s) | 812 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1410 |
| Bpu14I | TTCGAA | 1 cut(s) | 802 |
| BpuEI | CTTGAG | 1 cut(s) | 1236 |
| BpuMI | CCSGG | 1 cut(s) | 1521 |
| Bsa29I | ATCGAT | 2 cut(s) | 540, 1013 |
| BsaBI | GATNNNNATC | 1 cut(s) | 876 |
| BsaI | GGTCTC | 1 cut(s) | 363 |
| BsaJI | CCNNGG | 2 cut(s) | 45, 944 |
| BsaWI | WCCGGW | 1 cut(s) | 102 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 26, 56, 1268, 1298 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 852, 1102, 1310 |
| Bse1I | ACTGG | 4 cut(s) | 123, 732, 795, 903 |
| Bse3DI | GCAATG | 4 cut(s) | 71, 621, 963, 1418 |
| Bse8I | GATNNNNATC | 1 cut(s) | 876 |
| BseCI | ATCGAT | 2 cut(s) | 540, 1013 |
| BseDI | CCNNGG | 2 cut(s) | 45, 944 |
| BseGI | GGATG | 2 cut(s) | 198, 544 |
| BseJI | GATNNNNATC | 1 cut(s) | 876 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 852, 1102, 1310 |
| BseMI | GCAATG | 4 cut(s) | 71, 621, 963, 1418 |
| BseMII | CTCAG | 7 cut(s) | 9, 231, 498, 552, 1119, 1424, 1490 |
| BseNI | ACTGG | 4 cut(s) | 123, 732, 795, 903 |
| BseRI | GAGGAG | 3 cut(s) | 692, 695, 1476 |
| BseSI | GKGCMC | 2 cut(s) | 157, 1109 |
| BseYI | CCCAGC | 1 cut(s) | 60 |
| BsgI | GTGCAG | 1 cut(s) | 1208 |
| BshFI | GGCC | 2 cut(s) | 1363, 1507 |
| BshNI | GGYRCC | 1 cut(s) | 1399 |
| BshVI | ATCGAT | 2 cut(s) | 540, 1013 |
| BsiHKAI | GWGCWC | 1 cut(s) | 157 |
| BsiSI | CCGG | 3 cut(s) | 103, 1504, 1521 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 852, 1102, 1310 |
| BsmAI | GTCTC | 2 cut(s) | 337, 363 |
| BsmBI | CGTCTC | 1 cut(s) | 337 |
| BsmI | GAATGC | 2 cut(s) | 1066, 1341 |
| BsnI | GGCC | 2 cut(s) | 1363, 1507 |
| Bso31I | GGTCTC | 1 cut(s) | 363 |
| Bsp119I | TTCGAA | 1 cut(s) | 802 |
| Bsp1286I | GDGCHC | 3 cut(s) | 157, 1109, 1325 |
| Bsp1407I | TGTACA | 1 cut(s) | 1441 |
| Bsp143I | GATC | 4 cut(s) | 537, 541, 643, 775 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1410 |
| BspACI | CCGC | 9 cut(s) | 113, 217, 522, 652, 853, 859, 933, 1229, 1491 |
| BspANI | GGCC | 2 cut(s) | 1363, 1507 |
| BspCNI | CTCAG | 7 cut(s) | 10, 232, 499, 553, 1120, 1423, 1489 |
| BspDI | ATCGAT | 2 cut(s) | 540, 1013 |
| BspLI | GGNNCC | 3 cut(s) | 371, 1221, 1401 |
| BspMAI | CTGCAG | 2 cut(s) | 207, 586 |
| BspMI | ACCTGC | 1 cut(s) | 805 |
| BspPI | GGATC | 1 cut(s) | 638 |
| BspT104I | TTCGAA | 1 cut(s) | 802 |
| BspT107I | GGYRCC | 1 cut(s) | 1399 |
| BspTNI | GGTCTC | 1 cut(s) | 363 |
| BsrBI | CCGCTC | 1 cut(s) | 1493 |
| BsrDI | GCAATG | 4 cut(s) | 71, 621, 963, 1418 |
| BsrGI | TGTACA | 1 cut(s) | 1441 |
| BsrI | ACTGG | 4 cut(s) | 123, 732, 795, 903 |
| BssECI | CCNNGG | 2 cut(s) | 45, 944 |
| BssMI | GATC | 4 cut(s) | 537, 541, 643, 775 |
| BssSI | CACGAG | 1 cut(s) | 360 |
| BssT1I | CCWWGG | 2 cut(s) | 45, 944 |
| Bst2BI | CACGAG | 1 cut(s) | 360 |
| Bst4CI | ACNGT | 4 cut(s) | 212, 411, 593, 1337 |
| Bst6I | CTCTTC | 1 cut(s) | 333 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 965, 1420 |
| BstAUI | TGTACA | 1 cut(s) | 1441 |
| BstBI | TTCGAA | 1 cut(s) | 802 |
| BstC8I | GCNNGC | 2 cut(s) | 990, 1454 |
| BstDEI | CTNAG | 8 cut(s) | 18, 240, 507, 561, 1128, 1410, 1476, 1551 |
| BstF5I | GGATG | 2 cut(s) | 198, 544 |
| BstH2I | RGCGCY | 2 cut(s) | 436, 1181 |
| BstHHI | GCGC | 2 cut(s) | 435, 1180 |
| BstKTI | GATC | 4 cut(s) | 540, 544, 646, 778 |
| BstMAI | GTCTC | 2 cut(s) | 337, 363 |
| BstMBI | GATC | 4 cut(s) | 537, 541, 643, 775 |
| BstNSI | RCATGY | 2 cut(s) | 853, 1270 |
| BstSCI | CCNGG | 1 cut(s) | 1519 |
| BstSFI | CTRYAG | 2 cut(s) | 203, 582 |
| BstSLI | GKGCMC | 2 cut(s) | 157, 1109 |
| BstX2I | RGATCY | 1 cut(s) | 643 |
| BstYI | RGATCY | 1 cut(s) | 643 |
| Bsu15I | ATCGAT | 2 cut(s) | 540, 1013 |
| BsuI | GTATCC | 1 cut(s) | 529 |
| BsuRI | GGCC | 2 cut(s) | 1363, 1507 |
| BsuTUI | ATCGAT | 2 cut(s) | 540, 1013 |
| BtrI | CACGTC | 1 cut(s) | 1086 |
| BtsCI | GGATG | 2 cut(s) | 198, 544 |
| BtsI | GCAGTG | 1 cut(s) | 707 |
| BtsIMutI | CAGTG | 5 cut(s) | 15, 427, 549, 707, 1107 |
| BveI | ACCTGC | 1 cut(s) | 805 |
| Cac8I | GCNNGC | 2 cut(s) | 990, 1454 |
| CfoI | GCGC | 2 cut(s) | 435, 1180 |
| Cfr13I | GGNCC | 3 cut(s) | 500, 1134, 1361 |
| ClaI | ATCGAT | 2 cut(s) | 540, 1013 |
| Csp6I | GTAC | 3 cut(s) | 630, 1204, 1442 |
| CviAII | CATG | 7 cut(s) | 132, 299, 773, 850, 1138, 1267, 1318 |
| CviQI | GTAC | 3 cut(s) | 630, 1204, 1442 |
| DdeI | CTNAG | 8 cut(s) | 18, 240, 507, 561, 1128, 1410, 1476, 1551 |
| DpnI | GATC | 4 cut(s) | 539, 543, 645, 777 |
| DpnII | GATC | 4 cut(s) | 537, 541, 643, 775 |
| DraI | TTTAAA | 1 cut(s) | 886 |
| DraIII | CACNNNGTG | 1 cut(s) | 535 |
| EaeI | YGGCCR | 1 cut(s) | 1505 |
| Eam1104I | CTCTTC | 1 cut(s) | 333 |
| EarI | CTCTTC | 1 cut(s) | 333 |
| EciI | GGCGGA | 1 cut(s) | 948 |
| Eco130I | CCWWGG | 2 cut(s) | 45, 944 |
| Eco24I | GRGCYC | 1 cut(s) | 1325 |
| Eco31I | GGTCTC | 1 cut(s) | 363 |
| Eco47I | GGWCC | 2 cut(s) | 500, 1134 |
| Eco57I | CTGAAG | 4 cut(s) | 573, 1008, 1068, 1496 |
| EcoRI | GAATTC | 1 cut(s) | 416 |
| EcoT14I | CCWWGG | 2 cut(s) | 45, 944 |
| EcoT22I | ATGCAT | 1 cut(s) | 71 |
| EcoT38I | GRGCYC | 1 cut(s) | 1325 |
| ErhI | CCWWGG | 2 cut(s) | 45, 944 |
| Esp3I | CGTCTC | 1 cut(s) | 337 |
| FaeI | CATG | 7 cut(s) | 135, 302, 776, 853, 1141, 1270, 1321 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 372, 404 |
| FatI | CATG | 7 cut(s) | 131, 298, 772, 849, 1137, 1266, 1317 |
| FauI | CCCGC | 2 cut(s) | 645, 1498 |
| FauNDI | CATATG | 3 cut(s) | 810, 1327, 1383 |
| FbaI | TGATCA | 1 cut(s) | 775 |
| FokI | GGATG | 2 cut(s) | 185, 531 |
| FriOI | GRGCYC | 1 cut(s) | 1325 |
| FspBI | CTAG | 6 cut(s) | 318, 674, 945, 999, 1358, 1497 |
| GlaI | GCGC | 2 cut(s) | 434, 1179 |
| GsaI | CCCAGC | 1 cut(s) | 64 |
| GsuI | CTGGAG | 1 cut(s) | 812 |
| HaeII | RGCGCY | 2 cut(s) | 436, 1181 |
| HaeIII | GGCC | 2 cut(s) | 1363, 1507 |
| HapII | CCGG | 3 cut(s) | 103, 1504, 1521 |
| HhaI | GCGC | 2 cut(s) | 435, 1180 |
| Hin1II | CATG | 7 cut(s) | 135, 302, 776, 853, 1141, 1270, 1321 |
| Hin6I | GCGC | 2 cut(s) | 433, 1178 |
| HinP1I | GCGC | 2 cut(s) | 433, 1178 |
| HincII | GTYRAC | 2 cut(s) | 52, 619 |
| HindII | GTYRAC | 2 cut(s) | 52, 619 |
| HindIII | AAGCTT | 1 cut(s) | 986 |
| HinfI | GANTC | 5 cut(s) | 464, 782, 1112, 1234, 1429 |
| HpaII | CCGG | 3 cut(s) | 103, 1504, 1521 |
| HphI | GGTGA | 4 cut(s) | 92, 547, 581, 1399 |
| Hpy166II | GTNNAC | 5 cut(s) | 52, 155, 280, 619, 1333 |
| Hpy188I | TCNGA | 5 cut(s) | 168, 449, 479, 787, 1150 |
| Hpy188III | TCNNGA | 4 cut(s) | 281, 318, 779, 1308 |
| Hpy8I | GTNNAC | 5 cut(s) | 52, 155, 280, 619, 1333 |
| Hpy99I | CGWCG | 1 cut(s) | 287 |
| HpyAV | CCTTC | 3 cut(s) | 244, 281, 1191 |
| HpyCH4III | ACNGT | 4 cut(s) | 212, 411, 593, 1337 |
| HpyCH4IV | ACGT | 1 cut(s) | 1085 |
| HpyF3I | CTNAG | 8 cut(s) | 18, 240, 507, 561, 1128, 1410, 1476, 1551 |
| HpySE526I | ACGT | 1 cut(s) | 1085 |
| Hsp92II | CATG | 7 cut(s) | 135, 302, 776, 853, 1141, 1270, 1321 |
| HspAI | GCGC | 2 cut(s) | 433, 1178 |
| Ksp22I | TGATCA | 1 cut(s) | 775 |
| Kzo9I | GATC | 4 cut(s) | 537, 541, 643, 775 |
| LmnI | GCTCC | 3 cut(s) | 105, 369, 1498 |
| LweI | GCATC | 3 cut(s) | 547, 907, 1141 |
| MaeI | CTAG | 6 cut(s) | 318, 674, 945, 999, 1358, 1497 |
| MaeII | ACGT | 1 cut(s) | 1085 |
| MaeIII | GTNAC | 3 cut(s) | 81, 235, 1387 |
| MalI | GATC | 4 cut(s) | 539, 543, 645, 777 |
| MbiI | CCGCTC | 1 cut(s) | 1493 |
| MboI | GATC | 4 cut(s) | 537, 541, 643, 775 |
| MboII | GAAGA | 9 cut(s) | 248, 350, 407, 523, 566, 848, 996, 1061, 1069 |
| MflI | RGATCY | 1 cut(s) | 643 |
| MhlI | GDGCHC | 3 cut(s) | 157, 1109, 1325 |
| MluCI | AATT | 8 cut(s) | 143, 230, 416, 450, 755, 922, 1259, 1446 |
| MmeI | TCCRAC | 2 cut(s) | 393, 585 |
| Mph1103I | ATGCAT | 1 cut(s) | 71 |
| MseI | TTAA | 3 cut(s) | 717, 758, 885 |
| MslI | CAYNNNNRTG | 3 cut(s) | 88, 848, 1088 |
| MspA1I | CMGCKG | 1 cut(s) | 506 |
| MspI | CCGG | 3 cut(s) | 103, 1504, 1521 |
| MspR9I | CCNGG | 1 cut(s) | 1521 |
| MssI | GTTTAAAC | 1 cut(s) | 886 |
| Mva1269I | GAATGC | 2 cut(s) | 1066, 1341 |
| NciI | CCSGG | 1 cut(s) | 1521 |
| NdeI | CATATG | 3 cut(s) | 810, 1327, 1383 |
| NdeII | GATC | 4 cut(s) | 537, 541, 643, 775 |
| NlaIII | CATG | 7 cut(s) | 135, 302, 776, 853, 1141, 1270, 1321 |
| NlaIV | GGNNCC | 3 cut(s) | 371, 1221, 1401 |
| NmuCI | GTSAC | 2 cut(s) | 81, 1387 |
| NsiI | ATGCAT | 1 cut(s) | 71 |
| NspI | RCATGY | 2 cut(s) | 853, 1270 |
| NspV | TTCGAA | 1 cut(s) | 802 |
| OliI | CACNNNNGTG | 1 cut(s) | 88 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 288 |
| PctI | GAATGC | 2 cut(s) | 1066, 1341 |
| PfeI | GAWTC | 5 cut(s) | 464, 782, 1112, 1234, 1429 |
| PmeI | GTTTAAAC | 1 cut(s) | 886 |
| PspFI | CCCAGC | 1 cut(s) | 60 |
| PspN4I | GGNNCC | 3 cut(s) | 371, 1221, 1401 |
| PspPI | GGNCC | 3 cut(s) | 500, 1134, 1361 |
| PstI | CTGCAG | 2 cut(s) | 207, 586 |
| PsuI | RGATCY | 1 cut(s) | 643 |
| PvuII | CAGCTG | 1 cut(s) | 506 |
| RsaI | GTAC | 3 cut(s) | 631, 1205, 1443 |
| RsaNI | GTAC | 3 cut(s) | 630, 1204, 1442 |
| RseI | CAYNNNNRTG | 3 cut(s) | 88, 848, 1088 |
| SaqAI | TTAA | 3 cut(s) | 717, 758, 885 |
| Sau3AI | GATC | 4 cut(s) | 537, 541, 643, 775 |
| Sau96I | GGNCC | 3 cut(s) | 500, 1134, 1361 |
| ScrFI | CCNGG | 1 cut(s) | 1521 |
| SduI | GDGCHC | 3 cut(s) | 157, 1109, 1325 |
| SfaNI | GCATC | 3 cut(s) | 547, 907, 1141 |
| SfcI | CTRYAG | 2 cut(s) | 203, 582 |
| SfuI | TTCGAA | 1 cut(s) | 802 |
| SinI | GGWCC | 2 cut(s) | 500, 1134 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 88, 848, 1088 |
| SmlI | CTYRAG | 1 cut(s) | 1251 |
| SmoI | CTYRAG | 1 cut(s) | 1251 |
| Sse9I | AATT | 8 cut(s) | 143, 230, 416, 450, 755, 922, 1259, 1446 |
| SsiI | CCGC | 9 cut(s) | 113, 217, 522, 652, 853, 859, 933, 1229, 1491 |
| SspI | AATATT | 3 cut(s) | 691, 799, 1295 |
| SspMI | CTAG | 6 cut(s) | 318, 674, 945, 999, 1358, 1497 |
| StyD4I | CCNGG | 1 cut(s) | 1519 |
| StyI | CCWWGG | 2 cut(s) | 45, 944 |
| TaaI | ACNGT | 4 cut(s) | 212, 411, 593, 1337 |
| TaiI | ACGT | 1 cut(s) | 1088 |
| TaqI | TCGA | 3 cut(s) | 540, 802, 1013 |
| TasI | AATT | 8 cut(s) | 143, 230, 416, 450, 755, 922, 1259, 1446 |
| TatI | WGTACW | 2 cut(s) | 629, 1441 |
| TauI | GCSGC | 1 cut(s) | 862 |
| TfiI | GAWTC | 5 cut(s) | 464, 782, 1112, 1234, 1429 |
| Tru1I | TTAA | 3 cut(s) | 717, 758, 885 |
| Tru9I | TTAA | 3 cut(s) | 717, 758, 885 |
| TscAI | CASTG | 5 cut(s) | 22, 427, 556, 707, 1114 |
| TseFI | GTSAC | 2 cut(s) | 81, 1387 |
| Tsp45I | GTSAC | 2 cut(s) | 81, 1387 |
| TspDTI | ATGAA | 3 cut(s) | 17, 243, 1442 |
| TspGWI | ACGGA | 1 cut(s) | 137 |
| TspRI | CASTG | 5 cut(s) | 22, 427, 556, 707, 1114 |
| VneI | GTGCAC | 1 cut(s) | 153 |
| VpaK11BI | GGWCC | 2 cut(s) | 500, 1134 |
| XapI | RAATTY | 3 cut(s) | 230, 416, 922 |
| XbaI | TCTAGA | 1 cut(s) | 317 |
| XceI | RCATGY | 2 cut(s) | 853, 1270 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 970 |
| XmaJI | CCTAGG | 1 cut(s) | 944 |
| XspI | CTAG | 6 cut(s) | 318, 674, 945, 999, 1358, 1497 |
| Zsp2I | ATGCAT | 1 cut(s) | 71 |