Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0010009

Physical Location & Seq

Genomic Coordinates Forward (+)

27123946 .. 27128636

Gene Structure 4691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G020040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGGAAGAGAGGAGAGTATTTGGGTCTCGCATCGGAGCCTCAAAGAACTAATGCTTGGGCAAGAAGTGCCTCCACCCTTGGAGTTCAGTGGCAAAAAGCGCTCACGTTCAGTCAGAATTATGAAGAGAGATTCACGCTCTATCAGAACGAAACTTTCCATTGGAGGTGCAGCTGAGAAGATTGTATCGGCATTTCACTTGGTGATCGGTGAAAATCCAAATGAAGATGCCGAGATGAGTAAATGCAAGTCTGCAGTTCACCAAGTAAGGAAGTTGGAAAAAGATGTTGACAGTGCCTGTACTACTGCAAAGGATCCAAAACGGAAAAGTTTAGCAAAAGAACTCGAGGAGGAAGAAAATGTGTTGAAGCAGTGTTTTGAGAAACTTAAATCAGTTGAAGCGAGTAGAGTAGCACTTGTATCTCAATTAAGAGAAGCTTTGCATGAACAGGAATCCGAACTGGAGAATGTTCGAACTCATATGCAGGTGGCACAAGCACAGGCAGAAGAAGCCAGCAACATGCGGAAACGGCTAAATGATGAAGATTATATATTTAATCCATCAAGTGCTGATGCAAATTCCAAAGGAGGACACACACCAAAGAAGTCTGCTGCAGCCATTGCAGCTTTGGTTGCAGACAAGCTTGCTGCTTCTAGTTCCTCTCAACTAATTATGACTTCTGTTCTTTCTACTTTTGCTGCTGAAGAGGCGAAGAATGCTGGCCTGACCAAGCCCTCCACCTCTTCCAATTCATACCCATCCACGCCAAAGAGTTCGGGCACTGATTCAATGTCTAAACCCGAAAGGTCCATGCCAGTTTCAGATCCCAATGTTTTTATGTCAACACAGCCACCCGCTGCGCCTCCAAACCACTCTTACCAATCAGCAATGGTTCCACAACAGCAGAATCATGTCCCAACCTCACAAGCTCAATTTCATATGCTTCAAAACCCATCCTCACAACAATATTTACAGCCATCAGGAGGTGTCATGAGCCAATATGTTTACGGGAACATTCCACCTTTGCCTCTAGGACCACCACCACCCCCGCCGCATATGGTAAGTCCAATGGTGCCAATGTCTCAGCAGCCCATGCAAATGAATCAGCAGCCCTCACCAATTACCCAGCAGCAACAAATACCCTTAATTCAACAACCTCCTAGTTTCCGGCCACTTCAGCCACCCGGAATGGTGTATTATAGCCTTCCTCATCATTCTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

407

Amino Acids

44.7

Weight (kDa)

8.77

Isoelectric Point (pI)

67.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10060 AT5G65180 AT5G65180
fragaria_vesca	FvH4_1g21760 FvH4_1g21760
malus_domestica	MD01G1022500.v1.1 MD15G1330000.v1.1
prunus_persica	Prupe.6G178300_v2.0.a1
pyrus_communis	pycom01g05100 pycom15g29550
rosa_chinensis	RchiOBHm_Chr2g0115631
rosa_laevigata	RLG00000018199
rosa_roxburghii	Rroxscaffold_2G00128040 Rroxscaffold_2G00128910
rosa_rugosa	Rorug02G0198800 Rorug02G0198900
rosa_samantha	Rh2AG256000 Rh2BG266800 Rh2CG261400 Rh2DG264300
rosa_wichuraiana	Rw2G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	475
Acc36I	ACCTGC	1 cut(s)	475
AccB1I	GGYRCC	1 cut(s)	1072
AciI	CCGC	4 cut(s)	523, 855, 1049, 1052
AclWI	GGATC	3 cut(s)	308, 321, 818
AcoI	YGGCCR	1 cut(s)	1169
AcsI	RAATTY	1 cut(s)	577
AcuI	CTGAAG	2 cut(s)	723, 1160
AdeI	CACNNNGTG	1 cut(s)	202
AfaI	GTAC	1 cut(s)	301
AfeI	AGCGCT	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	983
AgsI	TTSAA	5 cut(s)	367, 398, 789, 947, 1151
AjuI	GAANNNNNNNTTGG	2 cut(s)	39, 71
AluBI	AGCT	5 cut(s)	173, 437, 626, 643, 929
AluI	AGCT	5 cut(s)	173, 437, 626, 643, 929
Alw26I	GTCTC	2 cut(s)	31, 1086
AlwI	GGATC	3 cut(s)	308, 321, 818
AlwNI	CAGNNNCTG	1 cut(s)	297
Ama87I	CYCGRG	1 cut(s)	344
Aor51HI	AGCGCT	1 cut(s)	101
AoxI	GGCC	2 cut(s)	721, 1169
ApoI	RAATTY	1 cut(s)	577
AspLEI	GCGC	2 cut(s)	102, 862
AspS9I	GGNCC	2 cut(s)	807, 1034
AsuC2I	CCSGG	1 cut(s)	1185
AsuHPI	GGTGA	4 cut(s)	214, 221, 251, 1107
AsuII	TTCGAA	1 cut(s)	472
AvaI	CYCGRG	1 cut(s)	344
AvaII	GGWCC	2 cut(s)	807, 1034
BaeGI	GKGCMC	1 cut(s)	782
BamHI	GGATCC	1 cut(s)	313
BanI	GGYRCC	1 cut(s)	1072
BccI	CCATC	4 cut(s)	568, 766, 961, 985
BceAI	ACGGC	1 cut(s)	545
BcnI	CCSGG	1 cut(s)	1185
BcoDI	GTCTC	2 cut(s)	31, 1086
BfaI	CTAG	3 cut(s)	654, 1031, 1161
BfmI	CTRYAG	2 cut(s)	252, 612
BfoI	RGCGCY	1 cut(s)	103
BfuAI	ACCTGC	1 cut(s)	475
Bme1390I	CCNGG	1 cut(s)	1185
Bme18I	GGWCC	2 cut(s)	807, 1034
BmeT110I	CYCGRG	1 cut(s)	344
BmgT120I	GGNCC	2 cut(s)	807, 1034
BmiI	GGNNCC	4 cut(s)	38, 315, 894, 1074
BmrFI	CCNGG	1 cut(s)	1185
BmsI	GCATC	3 cut(s)	40, 217, 562
BpmI	CTGGAG	1 cut(s)	482
Bpu14I	TTCGAA	1 cut(s)	472
BpuMI	CCSGG	1 cut(s)	1185
BsaI	GGTCTC	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	1 cut(s)	983
Bse1I	ACTGG	2 cut(s)	465, 815
Bse3DI	GCAATG	2 cut(s)	618, 894
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	2 cut(s)	758, 953
BseLI	CCNNNNNNNGG	1 cut(s)	983
BseMI	GCAATG	2 cut(s)	618, 894
BseMII	CTCAG	2 cut(s)	165, 1097
BseNI	ACTGG	2 cut(s)	465, 815
BseRI	GAGGAG	2 cut(s)	26, 362
BseSI	GKGCMC	1 cut(s)	782
BseYI	CCCAGC	1 cut(s)	1125
BsgI	GTGCAG	1 cut(s)	189
BshFI	GGCC	2 cut(s)	723, 1171
BshNI	GGYRCC	1 cut(s)	1072
BsiHKCI	CYCGRG	1 cut(s)	344
BsiSI	CCGG	2 cut(s)	1168, 1185
BslFI	GGGAC	1 cut(s)	899
BslI	CCNNNNNNNGG	1 cut(s)	983
BsmAI	GTCTC	2 cut(s)	31, 1086
BsmFI	GGGAC	1 cut(s)	899
BsmI	GAATGC	1 cut(s)	721
BsnI	GGCC	2 cut(s)	723, 1171
Bso31I	GGTCTC	1 cut(s)	31
BsoBI	CYCGRG	1 cut(s)	344
Bsp119I	TTCGAA	1 cut(s)	472
Bsp1286I	GDGCHC	1 cut(s)	782
Bsp143I	GATC	3 cut(s)	204, 313, 823
BspACI	CCGC	4 cut(s)	523, 855, 1049, 1052
BspANI	GGCC	2 cut(s)	723, 1171
BspCNI	CTCAG	2 cut(s)	166, 1096
BspHI	TCATGA	1 cut(s)	990
BspLI	GGNNCC	4 cut(s)	38, 315, 894, 1074
BspMAI	CTGCAG	2 cut(s)	256, 616
BspMI	ACCTGC	1 cut(s)	475
BspPI	GGATC	3 cut(s)	308, 321, 818
BspT104I	TTCGAA	1 cut(s)	472
BspT107I	GGYRCC	1 cut(s)	1072
BspTNI	GGTCTC	1 cut(s)	31
BsrDI	GCAATG	2 cut(s)	618, 894
BsrI	ACTGG	2 cut(s)	465, 815
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	3 cut(s)	204, 313, 823
BssT1I	CCWWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	3 cut(s)	119, 699, 748
BstAPI	GCANNNNNTGC	3 cut(s)	67, 620, 1093
BstBI	TTCGAA	1 cut(s)	472
BstC8I	GCNNGC	3 cut(s)	514, 645, 721
BstDEI	CTNAG	3 cut(s)	174, 1083, 1218
BstF5I	GGATG	2 cut(s)	758, 953
BstH2I	RGCGCY	1 cut(s)	103
BstHHI	GCGC	2 cut(s)	102, 862
BstKTI	GATC	3 cut(s)	207, 316, 826
BstMAI	GTCTC	2 cut(s)	31, 1086
BstMBI	GATC	3 cut(s)	204, 313, 823
BstNSI	RCATGY	1 cut(s)	523
BstSCI	CCNGG	1 cut(s)	1183
BstSFI	CTRYAG	2 cut(s)	252, 612
BstSLI	GKGCMC	1 cut(s)	782
BstX2I	RGATCY	2 cut(s)	313, 823
BstYI	RGATCY	2 cut(s)	313, 823
BsuRI	GGCC	2 cut(s)	723, 1171
BtsCI	GGATG	2 cut(s)	758, 953
BtsI	GCAGTG	1 cut(s)	377
BtsIMutI	CAGTG	4 cut(s)	94, 298, 377, 780
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	3 cut(s)	514, 645, 721
CaiI	CAGNNNCTG	1 cut(s)	297
CciI	TCATGA	1 cut(s)	990
CfoI	GCGC	2 cut(s)	102, 862
Cfr13I	GGNCC	2 cut(s)	807, 1034
Csp6I	GTAC	1 cut(s)	300
CviAII	CATG	6 cut(s)	443, 520, 811, 911, 991, 1093
CviQI	GTAC	1 cut(s)	300
DdeI	CTNAG	3 cut(s)	174, 1083, 1218
DpnI	GATC	3 cut(s)	206, 315, 825
DpnII	GATC	3 cut(s)	204, 313, 823
DraIII	CACNNNGTG	1 cut(s)	202
EaeI	YGGCCR	1 cut(s)	1169
Eam1104I	CTCTTC	3 cut(s)	119, 699, 748
EarI	CTCTTC	3 cut(s)	119, 699, 748
Eco130I	CCWWGG	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	31
Eco47I	GGWCC	2 cut(s)	807, 1034
Eco47III	AGCGCT	1 cut(s)	101
Eco57I	CTGAAG	2 cut(s)	723, 1160
Eco88I	CYCGRG	1 cut(s)	344
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	6 cut(s)	446, 523, 814, 914, 994, 1096
FalI	AAGNNNNNCTT	2 cut(s)	421, 453
FaqI	GGGAC	1 cut(s)	899
FatI	CATG	6 cut(s)	442, 519, 810, 910, 990, 1092
FauI	CCCGC	2 cut(s)	862, 1056
FauNDI	CATATG	3 cut(s)	480, 939, 1056
FokI	GGATG	2 cut(s)	745, 940
FspBI	CTAG	3 cut(s)	654, 1031, 1161
GlaI	GCGC	2 cut(s)	101, 861
GsaI	CCCAGC	1 cut(s)	1129
GsuI	CTGGAG	1 cut(s)	482
HaeII	RGCGCY	1 cut(s)	103
HaeIII	GGCC	2 cut(s)	723, 1171
HapII	CCGG	2 cut(s)	1168, 1185
HhaI	GCGC	2 cut(s)	102, 862
Hin1II	CATG	6 cut(s)	446, 523, 814, 914, 994, 1096
Hin6I	GCGC	2 cut(s)	100, 860
HinP1I	GCGC	2 cut(s)	100, 860
HincII	GTYRAC	2 cut(s)	289, 843
HindII	GTYRAC	2 cut(s)	289, 843
HindIII	AAGCTT	2 cut(s)	435, 641
HinfI	GANTC	5 cut(s)	131, 452, 785, 907, 1102
HpaII	CCGG	2 cut(s)	1168, 1185
HphI	GGTGA	4 cut(s)	214, 221, 251, 1107
Hpy166II	GTNNAC	4 cut(s)	259, 289, 843, 1006
Hpy188I	TCNGA	5 cut(s)	36, 116, 146, 457, 823
Hpy188III	TCNNGA	2 cut(s)	981, 991
Hpy8I	GTNNAC	4 cut(s)	259, 289, 843, 1006
HpyAV	CCTTC	1 cut(s)	1214
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	1 cut(s)	106
HpyF3I	CTNAG	3 cut(s)	174, 1083, 1218
HpySE526I	ACGT	1 cut(s)	106
Hsp92II	CATG	6 cut(s)	446, 523, 814, 914, 994, 1096
HspAI	GCGC	2 cut(s)	100, 860
Kzo9I	GATC	3 cut(s)	204, 313, 823
LmnI	GCTCC	1 cut(s)	36
LweI	GCATC	3 cut(s)	40, 217, 562
MaeI	CTAG	3 cut(s)	654, 1031, 1161
MaeII	ACGT	1 cut(s)	106
MalI	GATC	3 cut(s)	206, 315, 825
MboI	GATC	3 cut(s)	204, 313, 823
MflI	RGATCY	2 cut(s)	313, 823
MhlI	GDGCHC	1 cut(s)	782
MluCI	AATT	8 cut(s)	117, 425, 577, 669, 748, 932, 1119, 1146
MmeI	TCCRAC	1 cut(s)	255
MseI	TTAA	4 cut(s)	387, 428, 555, 1145
MslI	CAYNNNNRTG	1 cut(s)	1097
MspA1I	CMGCKG	2 cut(s)	173, 857
MspI	CCGG	2 cut(s)	1168, 1185
MspR9I	CCNGG	1 cut(s)	1185
Mva1269I	GAATGC	1 cut(s)	721
NciI	CCSGG	1 cut(s)	1185
NdeI	CATATG	3 cut(s)	480, 939, 1056
NdeII	GATC	3 cut(s)	204, 313, 823
NlaIII	CATG	6 cut(s)	446, 523, 814, 914, 994, 1096
NlaIV	GGNNCC	4 cut(s)	38, 315, 894, 1074
NmeAIII	GCCGAG	1 cut(s)	256
NspI	RCATGY	1 cut(s)	523
NspV	TTCGAA	1 cut(s)	472
PaeR7I	CTCGAG	1 cut(s)	344
PagI	TCATGA	1 cut(s)	990
PaqCI	CACCTGC	1 cut(s)	475
PctI	GAATGC	1 cut(s)	721
PfeI	GAWTC	5 cut(s)	131, 452, 785, 907, 1102
PspFI	CCCAGC	1 cut(s)	1125
PspN4I	GGNNCC	4 cut(s)	38, 315, 894, 1074
PspPI	GGNCC	2 cut(s)	807, 1034
PspXI	VCTCGAGB	1 cut(s)	344
PstI	CTGCAG	2 cut(s)	256, 616
PstNI	CAGNNNCTG	1 cut(s)	297
PsuI	RGATCY	2 cut(s)	313, 823
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	301
RsaNI	GTAC	1 cut(s)	300
RseI	CAYNNNNRTG	1 cut(s)	1097
SaqAI	TTAA	4 cut(s)	387, 428, 555, 1145
Sau3AI	GATC	3 cut(s)	204, 313, 823
Sau96I	GGNCC	2 cut(s)	807, 1034
ScrFI	CCNGG	1 cut(s)	1185
SduI	GDGCHC	1 cut(s)	782
SfaNI	GCATC	3 cut(s)	40, 217, 562
SfcI	CTRYAG	2 cut(s)	252, 612
Sfr274I	CTCGAG	1 cut(s)	344
SfuI	TTCGAA	1 cut(s)	472
SinI	GGWCC	2 cut(s)	807, 1034
SlaI	CTCGAG	1 cut(s)	344
SmiMI	CAYNNNNRTG	1 cut(s)	1097
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	8 cut(s)	117, 425, 577, 669, 748, 932, 1119, 1146
SsiI	CCGC	4 cut(s)	523, 855, 1049, 1052
SspI	AATATT	1 cut(s)	968
SspMI	CTAG	3 cut(s)	654, 1031, 1161
StyD4I	CCNGG	1 cut(s)	1183
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	2 cut(s)	345, 472
TasI	AATT	8 cut(s)	117, 425, 577, 669, 748, 932, 1119, 1146
TatI	WGTACW	1 cut(s)	299
TauI	GCSGC	1 cut(s)	1054
TfiI	GAWTC	5 cut(s)	131, 452, 785, 907, 1102
Tru1I	TTAA	4 cut(s)	387, 428, 555, 1145
Tru9I	TTAA	4 cut(s)	387, 428, 555, 1145
TscAI	CASTG	4 cut(s)	94, 298, 377, 787
TspDTI	ATGAA	7 cut(s)	137, 237, 459, 555, 741, 926, 1115
TspGWI	ACGGA	1 cut(s)	337
TspRI	CASTG	4 cut(s)	94, 298, 377, 787
VpaK11BI	GGWCC	2 cut(s)	807, 1034
XapI	RAATTY	1 cut(s)	577
XceI	RCATGY	1 cut(s)	523
XcmI	CCANNNNNNNNNTGG	1 cut(s)	625
XhoI	CTCGAG	1 cut(s)	344
XspI	CTAG	3 cut(s)	654, 1031, 1161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.