Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010009

Physical Location & Seq

Genomic Coordinates Reverse (-)

18534987 .. 18537099

Gene Structure 2113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0198800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTTGGTAACCAACTATGTCGGTTACCGAGACTACCGAACCGATTTCAAGATAATGAACCTATTAACCCAATCCAGTTCCCTCACTCTTTCCCTCAGCCACTCTTTCCCTCAGCCACTCTTTCCCTCGAGGCGAGGAACCCAGACATCTCCCGATCTCCGCCTCTCCGCGGCTCCGTCCTCTCTCTGCCTTTCGTTTCGATTCAAACCCAGAAATCTCCGCCTCTCCGCCCTCTCGACCTCTCCTTTGAAGTTCGATTCGATTCAAACCCAGAAAATCTCGTATCAATTCATTCGATTCATGTCCTCGTACTCTCTTTTGGTCAGTGCTGCTACTCAGATCTTTGATTTTTGCTTGAGCACCTGGTTGTTTATGGATTCTCTAATAGTTTTACTAATTTTATGTGCTCTTTTTGCTGTTGGTTGTTTTAGGCTGATGGAGAAGGAGAGACGATTTGTGGATGAAACTGACAGAATCTTGCTCCATTCTCAACAATTCAAGGAATCTGCTAATCGAGGGAGGCTTAAACCTGGAGTAATTTTGGAGCAGCTCCTAATGGTCGCTATAGGTACTCAACTGAATTTGCAGAATCAACTAATCAAGGCCTCATTAAACCTGGAGCAACATAGGAGCACGGCAGTTGGTCGGTTTGGAGCAAGAGAAAATGCTTTTAATCAAGGAGTGGAGGCAACATTGACCAATACCAGCTCTACACAAACTGTTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

242

Amino Acids

27.34

Weight (kDa)

9.85

Isoelectric Point (pI)

31.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10060 AT5G65180 AT5G65180
fragaria_vesca	FvH4_1g21760 FvH4_1g21760
malus_domestica	MD01G1022500.v1.1 MD15G1330000.v1.1
prunus_persica	Prupe.6G178300_v2.0.a1
pyrus_communis	pycom01g05100 pycom15g29550
rosa_chinensis	RchiOBHm_Chr2g0115631
rosa_laevigata	RLG00000018199
rosa_roxburghii	Rroxscaffold_2G00128040 Rroxscaffold_2G00128910
rosa_rugosa	Rorug02G0198800 Rorug02G0198900
rosa_samantha	Rh2AG256000 Rh2BG266800 Rh2CG261400 Rh2DG264300
rosa_wichuraiana	Rw2G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	127
AccII	CGCG	1 cut(s)	170
AciI	CCGC	5 cut(s)	160, 168, 170, 220, 228
AcsI	RAATTY	1 cut(s)	580
AfaI	GTAC	2 cut(s)	311, 571
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	5 cut(s)	49, 205, 250, 266, 499
AjnI	CCWGG	3 cut(s)	362, 529, 615
AluBI	AGCT	2 cut(s)	550, 708
AluI	AGCT	2 cut(s)	550, 708
Alw21I	GWGCWC	3 cut(s)	362, 409, 635
Alw26I	GTCTC	2 cut(s)	24, 442
Ama87I	CYCGRG	1 cut(s)	127
AoxI	GGCC	1 cut(s)	603
ApeKI	GCWGC	2 cut(s)	329, 547
ApoI	RAATTY	1 cut(s)	580
ArsI	GACNNNNNNTTYG	2 cut(s)	229, 261
AvaI	CYCGRG	1 cut(s)	127
Bbv12I	GWGCWC	3 cut(s)	362, 409, 635
BbvCI	CCTCAGC	2 cut(s)	95, 111
BbvI	GCAGC	2 cut(s)	316, 559
BccI	CCATC	1 cut(s)	430
BceAI	ACGGC	1 cut(s)	651
BciT130I	CCWGG	3 cut(s)	364, 531, 617
BcoDI	GTCTC	2 cut(s)	24, 442
BfaI	CTAG	1 cut(s)	727
BfmI	CTRYAG	1 cut(s)	564
BglII	AGATCT	1 cut(s)	339
BisI	GCNGC	3 cut(s)	171, 330, 548
BlsI	GCNGC	3 cut(s)	172, 331, 549
Bme1390I	CCNGG	3 cut(s)	364, 531, 617
BmeT110I	CYCGRG	1 cut(s)	127
BmiI	GGNNCC	2 cut(s)	139, 174
BmrFI	CCNGG	3 cut(s)	364, 531, 617
BpmI	CTGGAG	2 cut(s)	552, 638
Bpu10I	CCTNAGC	2 cut(s)	95, 111
BpuEI	CTTGAG	1 cut(s)	376
BsaJI	CCNNGG	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	75
BseBI	CCWGG	3 cut(s)	364, 531, 617
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	1 cut(s)	466
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMII	CTCAG	3 cut(s)	109, 125, 350
BseNI	ACTGG	1 cut(s)	75
BseXI	GCAGC	2 cut(s)	316, 559
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	1 cut(s)	605
BsiHKAI	GWGCWC	3 cut(s)	362, 409, 635
BsiHKCI	CYCGRG	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	2 cut(s)	24, 442
BsmBI	CGTCTC	1 cut(s)	442
BsnI	GGCC	1 cut(s)	605
BsoBI	CYCGRG	1 cut(s)	127
Bsp1286I	GDGCHC	3 cut(s)	362, 409, 635
Bsp143I	GATC	2 cut(s)	154, 339
BspACI	CCGC	5 cut(s)	160, 168, 170, 220, 228
BspANI	GGCC	1 cut(s)	605
BspCNI	CTCAG	3 cut(s)	108, 124, 349
BspFNI	CGCG	1 cut(s)	170
BspLI	GGNNCC	2 cut(s)	139, 174
BsrI	ACTGG	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	2 cut(s)	154, 339
Bst2UI	CCWGG	3 cut(s)	364, 531, 617
Bst4CI	ACNGT	1 cut(s)	721
BstDEI	CTNAG	3 cut(s)	95, 111, 336
BstDSI	CCRYGG	1 cut(s)	168
BstEII	GGTNACC	2 cut(s)	7, 23
BstF5I	GGATG	1 cut(s)	466
BstFNI	CGCG	1 cut(s)	170
BstKTI	GATC	2 cut(s)	157, 342
BstMAI	GTCTC	2 cut(s)	24, 442
BstMBI	GATC	2 cut(s)	154, 339
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstNI	CCWGG	3 cut(s)	364, 531, 617
BstPI	GGTNACC	2 cut(s)	7, 23
BstSCI	CCNGG	3 cut(s)	362, 529, 615
BstSFI	CTRYAG	1 cut(s)	564
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	2 cut(s)	316, 559
BstX2I	RGATCY	1 cut(s)	339
BstYI	RGATCY	1 cut(s)	339
BsuRI	GGCC	1 cut(s)	605
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	466
BtsIMutI	CAGTG	1 cut(s)	331
Cfr42I	CCGCGG	1 cut(s)	171
CsiI	ACCWGGT	1 cut(s)	362
Csp6I	GTAC	2 cut(s)	310, 570
CviAII	CATG	1 cut(s)	301
CviJI	RGCY	8 cut(s)	99, 115, 173, 433, 523, 550, 605, 708
CviKI_1	RGCY	8 cut(s)	99, 115, 173, 433, 523, 550, 605, 708
CviQI	GTAC	2 cut(s)	310, 570
DdeI	CTNAG	3 cut(s)	95, 111, 336
DpnI	GATC	2 cut(s)	156, 341
DpnII	GATC	2 cut(s)	154, 339
EciI	GGCGGA	3 cut(s)	149, 209, 217
Eco147I	AGGCCT	1 cut(s)	605
Eco88I	CYCGRG	1 cut(s)	127
Eco91I	GGTNACC	2 cut(s)	7, 23
EcoO65I	GGTNACC	2 cut(s)	7, 23
EcoRII	CCWGG	3 cut(s)	362, 529, 615
Esp3I	CGTCTC	1 cut(s)	442
FaeI	CATG	1 cut(s)	304
FaiI	YATR	6 cut(s)	18, 302, 374, 403, 566, 627
FatI	CATG	1 cut(s)	300
Fnu4HI	GCNGC	3 cut(s)	171, 330, 548
FokI	GGATG	1 cut(s)	473
Fsp4HI	GCNGC	3 cut(s)	171, 330, 548
FspBI	CTAG	1 cut(s)	727
GluI	GCNGC	3 cut(s)	171, 330, 548
GsuI	CTGGAG	2 cut(s)	552, 638
HaeIII	GGCC	1 cut(s)	605
Hin1II	CATG	1 cut(s)	304
HinfI	GANTC	8 cut(s)	201, 257, 262, 297, 377, 474, 503, 589
Hpy188I	TCNGA	1 cut(s)	339
Hpy188III	TCNNGA	3 cut(s)	49, 152, 235
HpyAV	CCTTC	1 cut(s)	436
HpyCH4III	ACNGT	1 cut(s)	721
HpyCH4V	TGCA	1 cut(s)	586
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpyF3I	CTNAG	3 cut(s)	95, 111, 336
Hsp92II	CATG	1 cut(s)	304
KspI	CCGCGG	1 cut(s)	171
Kzo9I	GATC	2 cut(s)	154, 339
LmnI	GCTCC	7 cut(s)	178, 486, 544, 555, 619, 630, 653
Lsp1109I	GCAGC	2 cut(s)	316, 559
MabI	ACCWGGT	1 cut(s)	362
MaeI	CTAG	1 cut(s)	727
MaeIII	GTNAC	2 cut(s)	7, 23
MalI	GATC	2 cut(s)	156, 341
MboI	GATC	2 cut(s)	154, 339
MflI	RGATCY	1 cut(s)	339
MhlI	GDGCHC	3 cut(s)	362, 409, 635
MluCI	AATT	5 cut(s)	287, 396, 494, 537, 580
MseI	TTAA	4 cut(s)	65, 525, 611, 672
MspA1I	CMGCKG	1 cut(s)	170
MspR9I	CCNGG	3 cut(s)	364, 531, 617
MvaI	CCWGG	3 cut(s)	364, 531, 617
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	1 cut(s)	413
NdeII	GATC	2 cut(s)	154, 339
NlaIII	CATG	1 cut(s)	304
NlaIV	GGNNCC	2 cut(s)	139, 174
PaeR7I	CTCGAG	1 cut(s)	127
PceI	AGGCCT	1 cut(s)	605
PfeI	GAWTC	8 cut(s)	201, 257, 262, 297, 377, 474, 503, 589
PkrI	GCNGC	3 cut(s)	172, 331, 549
Psp6I	CCWGG	3 cut(s)	362, 529, 615
PspEI	GGTNACC	2 cut(s)	7, 23
PspGI	CCWGG	3 cut(s)	362, 529, 615
PspN4I	GGNNCC	2 cut(s)	139, 174
PspXI	VCTCGAGB	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	339
RsaI	GTAC	2 cut(s)	311, 571
RsaNI	GTAC	2 cut(s)	310, 570
SacII	CCGCGG	1 cut(s)	171
SaqAI	TTAA	4 cut(s)	65, 525, 611, 672
SatI	GCNGC	3 cut(s)	171, 330, 548
Sau3AI	GATC	2 cut(s)	154, 339
ScrFI	CCNGG	3 cut(s)	364, 531, 617
SduI	GDGCHC	3 cut(s)	362, 409, 635
SetI	ASST	8 cut(s)	63, 242, 365, 532, 552, 571, 618, 710
SexAI	ACCWGGT	1 cut(s)	362
SfcI	CTRYAG	1 cut(s)	564
Sfr274I	CTCGAG	1 cut(s)	127
Sfr303I	CCGCGG	1 cut(s)	171
SgrBI	CCGCGG	1 cut(s)	171
SlaI	CTCGAG	1 cut(s)	127
SmlI	CTYRAG	2 cut(s)	127, 355
SmoI	CTYRAG	2 cut(s)	127, 355
Sse9I	AATT	5 cut(s)	287, 396, 494, 537, 580
SseBI	AGGCCT	1 cut(s)	605
SsiI	CCGC	5 cut(s)	160, 168, 170, 220, 228
SspMI	CTAG	1 cut(s)	727
StuI	AGGCCT	1 cut(s)	605
StyD4I	CCNGG	3 cut(s)	362, 529, 615
TaaI	ACNGT	1 cut(s)	721
TaqI	TCGA	7 cut(s)	128, 199, 236, 255, 260, 295, 514
TasI	AATT	5 cut(s)	287, 396, 494, 537, 580
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	8 cut(s)	201, 257, 262, 297, 377, 474, 503, 589
Tru1I	TTAA	4 cut(s)	65, 525, 611, 672
Tru9I	TTAA	4 cut(s)	65, 525, 611, 672
TscAI	CASTG	1 cut(s)	331
TseI	GCWGC	2 cut(s)	329, 547
TspDTI	ATGAA	4 cut(s)	71, 280, 289, 477
TspGWI	ACGGA	1 cut(s)	165
TspRI	CASTG	1 cut(s)	331
XapI	RAATTY	1 cut(s)	580
XhoI	CTCGAG	1 cut(s)	127
XspI	CTAG	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.