Rh2CG261400

Regulation of nuclear pre-mRNA domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0010009
Physical Location & Seq
Forward (+)
28041863 .. 28046583
4721 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG261400.1

Sequence Viewer

Length: 1395 bp
ATGGTTCAAAAAGTCCCTCTCTTGTATCTTGCCAATGACATCCTGCAGAACAGCAAGCGTAAAGGAAATGAATTTGTTACCGAGTTTTGGAAGGTTCTTCCAGGAGCTCTTAAAGTTATTAATGATGAAGGTGATGACCATGGAAAGAATGTTGTCTCTAGATTGGTTGGTATATGGGAAGAGAGGAGAGTATTTGGGTCTCGCACGCGGAGCCTCAAAGAACTAATGCTTGGGCAAGAAGTGCCTCCACCCTTGGAGTTCAGTGGCAAAAAGCGCTCACGTTCAGTCAGAATTATGAAAAGAGATTCACGCTCTATCAGAACGAAACTTTCCATTGGAGGTGCAGCTGAGAAGATTGTATCGGCATTTCACTTGGTGATCGGTGAAAATCCAAATGAAGATGCCGAGATGAGCAAATGCAAGTCTGCAGTTCACCAAGTAAGGAAGTTGGAAAAAGATGTTGACAGTGCCTGTACTACTGCAAAGGATCCAAAACGGAAAAGTTTAGCCAAAGAACTCGAGGAGGAAGAAAATGTGTTGAAGCAGTGTTTTGAGAAACTTAAATCAGTTGAAGCGAGTAGAGTAGCACTTGTATCTCAATTAAGAGAAGCTTTGCATGAACAGGAATCTGAACTGGAGAATGTTCGAACTCATATGCAGGTGGCACAAGCACAGGCAGAAGAAGCCAGCAACATGCGGAAACGGCTAAATGATGAAGATTATATATTTAATCCATCAAGTGCTGATGCTAATTCCAAAGGACACACACCAAAGAAGTCTGCTGCAGCCATTGCCGCTTTGGTTGCAGACAAGCTTGCTGCTTCTAGCTCCTCTCAACTAATTATGACTTCTGTACTTTCTACTTTTGCTGCTGAAGAGGCGAAGAATGCTGGCCTGACCAAGCCCTCCACCTCTTCCAATTCATACCCATCCACACCAAAGAGTTCGGGCACTGATTCAATGTCTAAACCCGAAAGGTCCATGCCAGTTTCAGATCCCAATGTTTTTATGTCAACACAGCCACCCACTGCGCCTCCAAACCACTCTTACCAATCAGCAATGGTTCCACAACAGCAGAATCATGTCCCAACCTCACAAGCTCAATTTCATATGCTTCAAAACCCATCCTCACAACAATATTTACAGCCATCAGGAGGTGTCATGAGCCAATATGTTTACGGGAACATTCCACCTTTGCCTCTAGGACCACCACCACCCCCACCGCATATGGTAAGTCCAATGGTGCCAATGTCTCAGCAGCCCATGCAAATGAACCAGCAGCCCTCCCCAATTACCCAGCAGCAACAAATACCCTTAATTCAACAACCTCCTAGTTTCCGGCCACTTCAGCCACCCGGAATGGTGTATTATAGCCTTCCTCATCATTCTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTD_bind

Protein Analysis

464

Amino Acids

51.26

Weight (kDa)

9.08

Isoelectric Point (pI)

62.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CID PF04818 3 - 68 1.2e-18 CID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 649
Acc36I ACCTGC 1 cut(s) 649
AccB1I GGYRCC 1 cut(s) 1243
AccII CGCG 1 cut(s) 208
AciI CCGC 4 cut(s) 208, 697, 795, 1223
AclWI GGATC 3 cut(s) 482, 495, 989
AcoI YGGCCR 1 cut(s) 1340
AcsI RAATTY 1 cut(s) 71
AcuI CTGAAG 2 cut(s) 894, 1331
AdeI CACNNNGTG 1 cut(s) 376
AfaI GTAC 2 cut(s) 475, 855
AfeI AGCGCT 1 cut(s) 275
AfiI CCNNNNNNNGG 2 cut(s) 87, 1154
AgsI TTSAA 6 cut(s) 8, 541, 572, 960, 1118, 1322
AjnI CCWGG 1 cut(s) 100
AjuI GAANNNNNNNTTGG 2 cut(s) 213, 245
AluBI AGCT 6 cut(s) 107, 347, 611, 814, 828, 1100
AluI AGCT 6 cut(s) 107, 347, 611, 814, 828, 1100
Alw21I GWGCWC 1 cut(s) 109
Alw26I GTCTC 3 cut(s) 160, 204, 1257
AlwI GGATC 3 cut(s) 482, 495, 989
AlwNI CAGNNNCTG 1 cut(s) 471
Ama87I CYCGRG 1 cut(s) 518
Aor51HI AGCGCT 1 cut(s) 275
AoxI GGCC 2 cut(s) 892, 1340
ApeKI GCWGC 8 cut(s) 344, 782, 785, 818, 869, 1258, 1279, 1300
ApoI RAATTY 1 cut(s) 71
AseI ATTAAT 1 cut(s) 120
AspLEI GCGC 2 cut(s) 276, 1033
AspS9I GGNCC 2 cut(s) 978, 1205
AsuC2I CCSGG 1 cut(s) 1356
AsuHPI GGTGA 4 cut(s) 143, 388, 395, 425
AsuII TTCGAA 1 cut(s) 646
AvaI CYCGRG 1 cut(s) 518
AvaII GGWCC 2 cut(s) 978, 1205
BaeGI GKGCMC 1 cut(s) 953
BamHI GGATCC 1 cut(s) 487
BanI GGYRCC 1 cut(s) 1243
BanII GRGCYC 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 109
BbvI GCAGC 8 cut(s) 356, 769, 797, 805, 856, 1270, 1291, 1312
BccI CCATC 4 cut(s) 742, 937, 1132, 1156
BceAI ACGGC 1 cut(s) 719
BciT130I CCWGG 1 cut(s) 102
BcnI CCSGG 1 cut(s) 1356
BcoDI GTCTC 3 cut(s) 160, 204, 1257
BfaI CTAG 4 cut(s) 159, 825, 1202, 1332
BfmI CTRYAG 3 cut(s) 44, 426, 783
BfoI RGCGCY 1 cut(s) 277
BfuAI ACCTGC 1 cut(s) 649
BisI GCNGC 9 cut(s) 345, 783, 786, 795, 819, 870, 1259, 1280, 1301
BlsI GCNGC 9 cut(s) 346, 784, 787, 796, 820, 871, 1260, 1281, 1302
Bme1390I CCNGG 2 cut(s) 102, 1356
Bme18I GGWCC 2 cut(s) 978, 1205
BmeT110I CYCGRG 1 cut(s) 518
BmgT120I GGNCC 2 cut(s) 978, 1205
BmiI GGNNCC 4 cut(s) 212, 489, 1065, 1245
BmrFI CCNGG 2 cut(s) 102, 1356
BmsI GCATC 2 cut(s) 391, 736
BpmI CTGGAG 1 cut(s) 656
Bpu14I TTCGAA 1 cut(s) 646
BpuMI CCSGG 1 cut(s) 1356
BsaI GGTCTC 1 cut(s) 204
BsaJI CCNNGG 2 cut(s) 139, 252
BsaXI ACNNNNNCTCC 2 cut(s) 1018, 1048
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 1154
Bse1I ACTGG 2 cut(s) 639, 986
Bse3DI GCAATG 2 cut(s) 789, 1065
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 2 cut(s) 139, 252
BseGI GGATG 3 cut(s) 39, 929, 1124
BseLI CCNNNNNNNGG 2 cut(s) 87, 1154
BseMI GCAATG 2 cut(s) 789, 1065
BseMII CTCAG 2 cut(s) 339, 1268
BseNI ACTGG 2 cut(s) 639, 986
BseRI GAGGAG 3 cut(s) 199, 536, 820
BseSI GKGCMC 1 cut(s) 953
BseXI GCAGC 8 cut(s) 356, 769, 797, 805, 856, 1270, 1291, 1312
BseYI CCCAGC 1 cut(s) 1296
BsgI GTGCAG 1 cut(s) 363
Bsh1236I CGCG 1 cut(s) 208
BshFI GGCC 2 cut(s) 894, 1342
BshNI GGYRCC 1 cut(s) 1243
BsiHKAI GWGCWC 1 cut(s) 109
BsiHKCI CYCGRG 1 cut(s) 518
BsiSI CCGG 2 cut(s) 1339, 1356
BslFI GGGAC 1 cut(s) 1070
BslI CCNNNNNNNGG 2 cut(s) 87, 1154
BsmAI GTCTC 3 cut(s) 160, 204, 1257
BsmFI GGGAC 1 cut(s) 1070
BsmI GAATGC 1 cut(s) 892
BsnI GGCC 2 cut(s) 894, 1342
Bso31I GGTCTC 1 cut(s) 204
BsoBI CYCGRG 1 cut(s) 518
Bsp119I TTCGAA 1 cut(s) 646
Bsp1286I GDGCHC 2 cut(s) 109, 953
Bsp143I GATC 3 cut(s) 378, 487, 994
Bsp19I CCATGG 1 cut(s) 139
BspACI CCGC 4 cut(s) 208, 697, 795, 1223
BspANI GGCC 2 cut(s) 894, 1342
BspCNI CTCAG 2 cut(s) 340, 1267
BspFNI CGCG 1 cut(s) 208
BspHI TCATGA 1 cut(s) 1161
BspLI GGNNCC 4 cut(s) 212, 489, 1065, 1245
BspMAI CTGCAG 3 cut(s) 48, 430, 787
BspMI ACCTGC 1 cut(s) 649
BspPI GGATC 3 cut(s) 482, 495, 989
BspT104I TTCGAA 1 cut(s) 646
BspT107I GGYRCC 1 cut(s) 1243
BspTNI GGTCTC 1 cut(s) 204
BsrDI GCAATG 2 cut(s) 789, 1065
BsrI ACTGG 2 cut(s) 639, 986
BssECI CCNNGG 2 cut(s) 139, 252
BssMI GATC 3 cut(s) 378, 487, 994
BssT1I CCWWGG 2 cut(s) 139, 252
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 467
Bst6I CTCTTC 3 cut(s) 174, 870, 919
BstAPI GCANNNNNTGC 3 cut(s) 241, 791, 1264
BstBI TTCGAA 1 cut(s) 646
BstC8I GCNNGC 5 cut(s) 56, 206, 688, 816, 892
BstDEI CTNAG 3 cut(s) 348, 1254, 1389
BstDSI CCRYGG 1 cut(s) 139
BstF5I GGATG 3 cut(s) 39, 929, 1124
BstFNI CGCG 1 cut(s) 208
BstH2I RGCGCY 1 cut(s) 277
BstHHI GCGC 2 cut(s) 276, 1033
BstKTI GATC 3 cut(s) 381, 490, 997
BstMAI GTCTC 3 cut(s) 160, 204, 1257
BstMBI GATC 3 cut(s) 378, 487, 994
BstNI CCWGG 1 cut(s) 102
BstNSI RCATGY 1 cut(s) 697
BstSCI CCNGG 2 cut(s) 100, 1354
BstSFI CTRYAG 3 cut(s) 44, 426, 783
BstSLI GKGCMC 1 cut(s) 953
BstUI CGCG 1 cut(s) 208
BstV1I GCAGC 8 cut(s) 356, 769, 797, 805, 856, 1270, 1291, 1312
BstX2I RGATCY 2 cut(s) 487, 994
BstYI RGATCY 2 cut(s) 487, 994
BsuRI GGCC 2 cut(s) 894, 1342
BtgI CCRYGG 1 cut(s) 139
BtsCI GGATG 3 cut(s) 39, 929, 1124
BtsI GCAGTG 2 cut(s) 551, 1026
BtsIMutI CAGTG 5 cut(s) 268, 472, 551, 951, 1026
BveI ACCTGC 1 cut(s) 649
Cac8I GCNNGC 5 cut(s) 56, 206, 688, 816, 892
CaiI CAGNNNCTG 1 cut(s) 471
CciI TCATGA 1 cut(s) 1161
CfoI GCGC 2 cut(s) 276, 1033
Cfr13I GGNCC 2 cut(s) 978, 1205
Csp6I GTAC 2 cut(s) 474, 854
CviAII CATG 7 cut(s) 140, 617, 694, 982, 1082, 1162, 1264
CviQI GTAC 2 cut(s) 474, 854
DdeI CTNAG 3 cut(s) 348, 1254, 1389
DpnI GATC 3 cut(s) 380, 489, 996
DpnII GATC 3 cut(s) 378, 487, 994
DraIII CACNNNGTG 1 cut(s) 376
EaeI YGGCCR 1 cut(s) 1340
Eam1104I CTCTTC 3 cut(s) 174, 870, 919
EarI CTCTTC 3 cut(s) 174, 870, 919
Ecl136II GAGCTC 1 cut(s) 107
Eco130I CCWWGG 2 cut(s) 139, 252
Eco24I GRGCYC 1 cut(s) 109
Eco31I GGTCTC 1 cut(s) 204
Eco47I GGWCC 2 cut(s) 978, 1205
Eco47III AGCGCT 1 cut(s) 275
Eco53kI GAGCTC 1 cut(s) 107
Eco57I CTGAAG 2 cut(s) 894, 1331
Eco88I CYCGRG 1 cut(s) 518
EcoICRI GAGCTC 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 100
EcoT14I CCWWGG 2 cut(s) 139, 252
EcoT38I GRGCYC 1 cut(s) 109
ErhI CCWWGG 2 cut(s) 139, 252
FaeI CATG 7 cut(s) 143, 620, 697, 985, 1085, 1165, 1267
FalI AAGNNNNNCTT 2 cut(s) 595, 627
FaqI GGGAC 1 cut(s) 1070
FatI CATG 7 cut(s) 139, 616, 693, 981, 1081, 1161, 1263
FauNDI CATATG 3 cut(s) 654, 1110, 1227
Fnu4HI GCNGC 9 cut(s) 345, 783, 786, 795, 819, 870, 1259, 1280, 1301
FokI GGATG 3 cut(s) 26, 916, 1111
FriOI GRGCYC 1 cut(s) 109
Fsp4HI GCNGC 9 cut(s) 345, 783, 786, 795, 819, 870, 1259, 1280, 1301
FspBI CTAG 4 cut(s) 159, 825, 1202, 1332
GlaI GCGC 2 cut(s) 275, 1032
GluI GCNGC 9 cut(s) 345, 783, 786, 795, 819, 870, 1259, 1280, 1301
GsaI CCCAGC 1 cut(s) 1300
GsuI CTGGAG 1 cut(s) 656
HaeII RGCGCY 1 cut(s) 277
HaeIII GGCC 2 cut(s) 894, 1342
HapII CCGG 2 cut(s) 1339, 1356
HhaI GCGC 2 cut(s) 276, 1033
Hin1II CATG 7 cut(s) 143, 620, 697, 985, 1085, 1165, 1267
Hin6I GCGC 2 cut(s) 274, 1031
HinP1I GCGC 2 cut(s) 274, 1031
HincII GTYRAC 2 cut(s) 463, 1014
HindII GTYRAC 2 cut(s) 463, 1014
HindIII AAGCTT 2 cut(s) 609, 812
HinfI GANTC 4 cut(s) 305, 626, 956, 1078
HpaII CCGG 2 cut(s) 1339, 1356
HphI GGTGA 4 cut(s) 143, 388, 395, 425
Hpy166II GTNNAC 4 cut(s) 433, 463, 1014, 1177
Hpy188I TCNGA 4 cut(s) 290, 320, 631, 994
Hpy188III TCNNGA 3 cut(s) 159, 1152, 1162
Hpy8I GTNNAC 4 cut(s) 433, 463, 1014, 1177
HpyAV CCTTC 3 cut(s) 85, 122, 1385
HpyCH4III ACNGT 1 cut(s) 467
HpyCH4IV ACGT 1 cut(s) 280
HpyF3I CTNAG 3 cut(s) 348, 1254, 1389
HpySE526I ACGT 1 cut(s) 280
Hsp92II CATG 7 cut(s) 143, 620, 697, 985, 1085, 1165, 1267
HspAI GCGC 2 cut(s) 274, 1031
Kzo9I GATC 3 cut(s) 378, 487, 994
LmnI GCTCC 3 cut(s) 104, 210, 833
Lsp1109I GCAGC 8 cut(s) 356, 769, 797, 805, 856, 1270, 1291, 1312
LweI GCATC 2 cut(s) 391, 736
MaeI CTAG 4 cut(s) 159, 825, 1202, 1332
MaeII ACGT 1 cut(s) 280
MaeIII GTNAC 1 cut(s) 76
MalI GATC 3 cut(s) 380, 489, 996
MboI GATC 3 cut(s) 378, 487, 994
MflI RGATCY 2 cut(s) 487, 994
MhlI GDGCHC 2 cut(s) 109, 953
MluCI AATT 9 cut(s) 71, 291, 599, 751, 840, 919, 1103, 1290, 1317
MmeI TCCRAC 1 cut(s) 429
MseI TTAA 6 cut(s) 111, 120, 561, 602, 729, 1316
MslI CAYNNNNRTG 1 cut(s) 1268
MspA1I CMGCKG 1 cut(s) 347
MspI CCGG 2 cut(s) 1339, 1356
MspR9I CCNGG 2 cut(s) 102, 1356
Mva1269I GAATGC 1 cut(s) 892
MvaI CCWGG 1 cut(s) 102
MvnI CGCG 1 cut(s) 208
NciI CCSGG 1 cut(s) 1356
NcoI CCATGG 1 cut(s) 139
NdeI CATATG 3 cut(s) 654, 1110, 1227
NdeII GATC 3 cut(s) 378, 487, 994
NlaIII CATG 7 cut(s) 143, 620, 697, 985, 1085, 1165, 1267
NlaIV GGNNCC 4 cut(s) 212, 489, 1065, 1245
NmeAIII GCCGAG 1 cut(s) 430
NspI RCATGY 1 cut(s) 697
NspV TTCGAA 1 cut(s) 646
PaeR7I CTCGAG 1 cut(s) 518
PagI TCATGA 1 cut(s) 1161
PaqCI CACCTGC 1 cut(s) 649
PctI GAATGC 1 cut(s) 892
PfeI GAWTC 4 cut(s) 305, 626, 956, 1078
PfoI TCCNGGA 1 cut(s) 100
PkrI GCNGC 9 cut(s) 346, 784, 787, 796, 820, 871, 1260, 1281, 1302
PshBI ATTAAT 1 cut(s) 120
Psp124BI GAGCTC 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 100
PspFI CCCAGC 1 cut(s) 1296
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 4 cut(s) 212, 489, 1065, 1245
PspPI GGNCC 2 cut(s) 978, 1205
PspXI VCTCGAGB 1 cut(s) 518
PstI CTGCAG 3 cut(s) 48, 430, 787
PstNI CAGNNNCTG 1 cut(s) 471
PsuI RGATCY 2 cut(s) 487, 994
PvuII CAGCTG 1 cut(s) 347
RsaI GTAC 2 cut(s) 475, 855
RsaNI GTAC 2 cut(s) 474, 854
RseI CAYNNNNRTG 1 cut(s) 1268
SacI GAGCTC 1 cut(s) 109
SaqAI TTAA 6 cut(s) 111, 120, 561, 602, 729, 1316
SatI GCNGC 9 cut(s) 345, 783, 786, 795, 819, 870, 1259, 1280, 1301
Sau3AI GATC 3 cut(s) 378, 487, 994
Sau96I GGNCC 2 cut(s) 978, 1205
ScrFI CCNGG 2 cut(s) 102, 1356
SduI GDGCHC 2 cut(s) 109, 953
SfaNI GCATC 2 cut(s) 391, 736
SfcI CTRYAG 3 cut(s) 44, 426, 783
Sfr274I CTCGAG 1 cut(s) 518
SfuI TTCGAA 1 cut(s) 646
SinI GGWCC 2 cut(s) 978, 1205
SlaI CTCGAG 1 cut(s) 518
SmiMI CAYNNNNRTG 1 cut(s) 1268
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
Sse9I AATT 9 cut(s) 71, 291, 599, 751, 840, 919, 1103, 1290, 1317
SsiI CCGC 4 cut(s) 208, 697, 795, 1223
SspI AATATT 1 cut(s) 1139
SspMI CTAG 4 cut(s) 159, 825, 1202, 1332
SstI GAGCTC 1 cut(s) 109
StyD4I CCNGG 2 cut(s) 100, 1354
StyI CCWWGG 2 cut(s) 139, 252
TaaI ACNGT 1 cut(s) 467
TaiI ACGT 1 cut(s) 283
TaqI TCGA 2 cut(s) 519, 646
TasI AATT 9 cut(s) 71, 291, 599, 751, 840, 919, 1103, 1290, 1317
TatI WGTACW 2 cut(s) 473, 853
TauI GCSGC 1 cut(s) 797
TfiI GAWTC 4 cut(s) 305, 626, 956, 1078
Tru1I TTAA 6 cut(s) 111, 120, 561, 602, 729, 1316
Tru9I TTAA 6 cut(s) 111, 120, 561, 602, 729, 1316
TscAI CASTG 5 cut(s) 268, 472, 551, 958, 1033
TseI GCWGC 8 cut(s) 344, 782, 785, 818, 869, 1258, 1279, 1300
TspDTI ATGAA 9 cut(s) 84, 141, 311, 411, 633, 729, 912, 1097, 1286
TspGWI ACGGA 1 cut(s) 511
TspRI CASTG 5 cut(s) 268, 472, 551, 958, 1033
VpaK11BI GGWCC 2 cut(s) 978, 1205
VspI ATTAAT 1 cut(s) 120
XapI RAATTY 1 cut(s) 71
XbaI TCTAGA 1 cut(s) 158
XceI RCATGY 1 cut(s) 697
XcmI CCANNNNNNNNNTGG 1 cut(s) 796
XhoI CTCGAG 1 cut(s) 518
XspI CTAG 4 cut(s) 159, 825, 1202, 1332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.