Prupe.6G178300_v2.0.a1

Regulation of nuclear pre-mRNA domain-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
18330464 .. 18336983
6520 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G178300.1

Sequence Viewer

Length: 1578 bp
ATGAATAGTGTATTCAGTGAGCAGATACTTGCAGACAAGCTCTCGAAGCTCAACAGCACCCAGCAATGCATTGAAACTTTGTCACATTGGTGTATATTTCACCGAAGCAAAGCGGAACTGGTTGTTACAACATGGGATAAACAATTCCATAATGCACAGATGGTTCAGAAAGTTCCTCTCTTGTATCTTGCAAATGACATCCTACAGAACAGTAAGCGTAAAGGAAATGAATTTGTTACCGAGTTTTGGAAGGTTCTTCCAGCTGCGCTCAAAGTTGTTATTGAGGAAGGCGATGATCATGGAAAGACTGTTGTCTCTAGATTAGTTGGAATATGGGAAGAGAGGCGAGTATTTGGGTCTCGTGCCCGGAGCCTCAAAGAACTAATGCTTGGGGAAGAAGTGCCTCCACCCTTGGAATTCAACGGCAAGAAGCGCTCACGTTCAGTCAGAATTGTAAAAAGAGATTCACGCTCTATCAGAACGAAACTTTCCATTGGTGGTTCAGCTGAGAAGATCGTATCTGCATTTCACTCAGTGATCAGTGAACATCCCACTGAAGATGCTGAGATGAGTAAATGCAAATCTGCAGTTCATCGTGTAAGGAAGTTGGAGAAAGATGTTGACATAGCCTGTACTAATGCAAAGGATCCAAAGCGGAAAACTTTATCAAAAGAACTAGAGGAGGAAGAAAATCTTTTGAAGCAATGTATTGAAAAACTTAAATTAGTTGAAGCAAGTAGAGTAGCGCTTGTATCTCAATTAAAAGAAGCTCTGCATGAACAGGAATCTGAACTGGAGAATGTTCGGACTCATATGCAGGTAGCACAGGCACAGGCAGAAGAAGCCACGAACATGCGGAAGCGACTCAATGATGAAGACTATGTATTTAAACCATCAAGTGCGACTAGTCCACCGACTGATGGAAATTCTAAAGGGGGACAAACACCTAGGAAATCAGCTGCAGCCATTGCAGCTTTGGTTGCAGACAAGCTTGCTGCTTCTAGTTCTTCTCAATTGATTATGACTTCTGTTCTTTCTACTTTCGCTGCTGAAGAAGCGAAGAACGCTGGTCTGACAAAGCCCTCCACGTCTTCAAATTCATTCACATCCATGCCCAAGAGTTCGGGGACTGATTCAATGTCCAAACCTGAAAGGTCCATACCAGTTTCAGATGCCAATGTTTTTATTTCAGCACAGCCGCCTGCTGTGCCGCCAAACCATTCATACCAATCAGCATTGGTTCCCCAACCTCAGAATCAAGCCCCCACCTCTCAAGGTCAATTTCACATGCTTCCAAACCCACCCTCCCAACAATATTTACAGCCAGCAGGAGGGGTCATGAGCTCATATGGTTATGGGAGCATTCCACCTTTGCCTCTAGGACCACCACCTCCCCCGCCTCATATGGTGAGTCCAATGGTGCCTTTGACTCAACAGCCATTGCAAATGAATCAACAGGCCGTACAAATTACCCAGCAGCAACCAATACCCTTAACTCAGCAACCTCCAGCTCCTAGTTTCCGACCACTTCAGCCACCTGGAATGGTGTATTACGGTCATCCTCATAATTCTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

526

Amino Acids

57.83

Weight (kDa)

9.03

Isoelectric Point (pI)

58.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 808
AccB1I GGYRCC 1 cut(s) 1420
AciI CCGC 6 cut(s) 113, 655, 856, 1199, 1211, 1397
AclWI GGATC 2 cut(s) 641, 654
AcsI RAATTY 4 cut(s) 230, 416, 925, 1096
AcuI CTGAAG 3 cut(s) 576, 1071, 1514
AdeI CACNNNGTG 1 cut(s) 535
AfaI GTAC 2 cut(s) 634, 1464
AfeI AGCGCT 2 cut(s) 434, 747
AfiI CCNNNNNNNGG 3 cut(s) 246, 920, 1331
AgsI TTSAA 7 cut(s) 74, 421, 700, 713, 731, 1095, 1137
AhlI ACTAGT 1 cut(s) 905
AjiI CACGTC 1 cut(s) 1089
AjnI CCWGG 1 cut(s) 1537
AjuI GAANNNNNNNTTGG 2 cut(s) 372, 404
AleI CACNNNNGTG 1 cut(s) 88
Alw21I GWGCWC 1 cut(s) 1346
Alw26I GTCTC 2 cut(s) 319, 363
AlwI GGATC 2 cut(s) 641, 654
Aor51HI AGCGCT 2 cut(s) 434, 747
AoxI GGCC 1 cut(s) 1458
ApeKI GCWGC 7 cut(s) 263, 959, 962, 971, 995, 1046, 1477
ApoI RAATTY 4 cut(s) 230, 416, 925, 1096
AspA2I CCTAGG 1 cut(s) 947
AspLEI GCGC 3 cut(s) 268, 435, 748
AspS9I GGNCC 2 cut(s) 1155, 1382
AsuC2I CCSGG 1 cut(s) 367
AsuHPI GGTGA 2 cut(s) 92, 1420
AvaII GGWCC 2 cut(s) 1155, 1382
AvrII CCTAGG 1 cut(s) 947
BaeGI GKGCMC 1 cut(s) 367
BamHI GGATCC 1 cut(s) 646
BanI GGYRCC 1 cut(s) 1420
BanII GRGCYC 1 cut(s) 1346
BauI CACGAG 1 cut(s) 360
BbsI GAAGAC 2 cut(s) 882, 1083
Bbv12I GWGCWC 1 cut(s) 1346
BbvI GCAGC 7 cut(s) 250, 946, 974, 982, 983, 1033, 1489
BccI CCATC 3 cut(s) 154, 901, 914
BceAI ACGGC 2 cut(s) 439, 1445
BciT130I CCWGG 1 cut(s) 1539
BclI TGATCA 2 cut(s) 295, 537
BcnI CCSGG 1 cut(s) 367
BcoDI GTCTC 2 cut(s) 319, 363
BcuI ACTAGT 1 cut(s) 905
BfaI CTAG 7 cut(s) 318, 677, 906, 948, 1002, 1379, 1515
BfmI CTRYAG 3 cut(s) 203, 585, 960
BfoI RGCGCY 2 cut(s) 436, 749
BfuAI ACCTGC 1 cut(s) 808
BisI GCNGC 9 cut(s) 264, 960, 963, 972, 996, 1047, 1199, 1211, 1478
BlnI CCTAGG 1 cut(s) 947
BlsI GCNGC 9 cut(s) 265, 961, 964, 973, 997, 1048, 1200, 1212, 1479
Bme1390I CCNGG 2 cut(s) 367, 1539
Bme18I GGWCC 2 cut(s) 1155, 1382
BmgBI CACGTC 1 cut(s) 1089
BmgT120I GGNCC 2 cut(s) 1155, 1382
BmiI GGNNCC 4 cut(s) 371, 648, 1242, 1422
BmrFI CCNGG 2 cut(s) 367, 1539
BmsI GCATC 2 cut(s) 550, 1162
BoxI GACNNNNGTC 1 cut(s) 311
BpiI GAAGAC 2 cut(s) 882, 1083
BpmI CTGGAG 2 cut(s) 815, 1491
BpuEI CTTGAG 1 cut(s) 1257
BpuMI CCSGG 1 cut(s) 367
BsaI GGTCTC 1 cut(s) 363
BsaJI CCNNGG 2 cut(s) 411, 947
BsaXI ACNNNNNCTCC 2 cut(s) 1289, 1319
Bsc4I CCNNNNNNNGG 3 cut(s) 246, 920, 1331
Bse1I ACTGG 3 cut(s) 123, 798, 1163
Bse3DI GCAATG 4 cut(s) 71, 710, 966, 1439
BseBI CCWGG 1 cut(s) 1539
BseDI CCNNGG 2 cut(s) 411, 947
BseGI GGATG 4 cut(s) 198, 547, 1106, 1558
BseLI CCNNNNNNNGG 3 cut(s) 246, 920, 1331
BseMI GCAATG 4 cut(s) 71, 710, 966, 1439
BseMII CTCAG 5 cut(s) 498, 546, 555, 1265, 1511
BseNI ACTGG 3 cut(s) 123, 798, 1163
BseRI GAGGAG 1 cut(s) 695
BseSI GKGCMC 1 cut(s) 367
BseXI GCAGC 7 cut(s) 250, 946, 974, 982, 983, 1033, 1489
BseYI CCCAGC 2 cut(s) 60, 1473
BshFI GGCC 1 cut(s) 1460
BshNI GGYRCC 1 cut(s) 1420
BsiHKAI GWGCWC 1 cut(s) 1346
BsiSI CCGG 1 cut(s) 367
BslFI GGGAC 2 cut(s) 951, 1141
BslI CCNNNNNNNGG 3 cut(s) 246, 920, 1331
BsmAI GTCTC 2 cut(s) 319, 363
BsmFI GGGAC 2 cut(s) 951, 1141
BsmI GAATGC 1 cut(s) 1362
BsnI GGCC 1 cut(s) 1460
Bso31I GGTCTC 1 cut(s) 363
Bsp1286I GDGCHC 2 cut(s) 367, 1346
Bsp143I GATC 4 cut(s) 295, 513, 537, 646
BspACI CCGC 6 cut(s) 113, 655, 856, 1199, 1211, 1397
BspANI GGCC 1 cut(s) 1460
BspCNI CTCAG 5 cut(s) 499, 545, 556, 1264, 1510
BspHI TCATGA 1 cut(s) 1338
BspLI GGNNCC 4 cut(s) 371, 648, 1242, 1422
BspMAI CTGCAG 2 cut(s) 589, 964
BspMI ACCTGC 1 cut(s) 808
BspPI GGATC 2 cut(s) 641, 654
BspT107I GGYRCC 1 cut(s) 1420
BspTNI GGTCTC 1 cut(s) 363
BsrDI GCAATG 4 cut(s) 71, 710, 966, 1439
BsrI ACTGG 3 cut(s) 123, 798, 1163
BssECI CCNNGG 2 cut(s) 411, 947
BssMI GATC 4 cut(s) 295, 513, 537, 646
BssSI CACGAG 1 cut(s) 360
BssT1I CCWWGG 2 cut(s) 411, 947
Bst2BI CACGAG 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 1539
Bst4CI ACNGT 3 cut(s) 212, 310, 1556
Bst6I CTCTTC 1 cut(s) 333
BstAPI GCANNNNNTGC 1 cut(s) 968
BstC8I GCNNGC 3 cut(s) 993, 1203, 1326
BstDEI CTNAG 6 cut(s) 507, 532, 564, 1251, 1497, 1572
BstF5I GGATG 4 cut(s) 198, 547, 1106, 1558
BstH2I RGCGCY 2 cut(s) 436, 749
BstHHI GCGC 3 cut(s) 268, 435, 748
BstKTI GATC 4 cut(s) 298, 516, 540, 649
BstMAI GTCTC 2 cut(s) 319, 363
BstMBI GATC 4 cut(s) 295, 513, 537, 646
BstMWI GCNNNNNNNGC 9 cut(s) 46, 432, 842, 968, 971, 980, 1055, 1064, 1207
BstNI CCWGG 1 cut(s) 1539
BstNSI RCATGY 2 cut(s) 856, 1291
BstPAI GACNNNNGTC 1 cut(s) 311
BstSCI CCNGG 2 cut(s) 365, 1537
BstSFI CTRYAG 3 cut(s) 203, 585, 960
BstSLI GKGCMC 1 cut(s) 367
BstV1I GCAGC 7 cut(s) 250, 946, 974, 982, 983, 1033, 1489
BstV2I GAAGAC 2 cut(s) 882, 1083
BstX2I RGATCY 1 cut(s) 646
BstYI RGATCY 1 cut(s) 646
BsuRI GGCC 1 cut(s) 1460
BtgZI GCGATG 1 cut(s) 306
BtrI CACGTC 1 cut(s) 1089
BtsCI GGATG 4 cut(s) 198, 547, 1106, 1558
BtsIMutI CAGTG 4 cut(s) 22, 540, 547, 552
BveI ACCTGC 1 cut(s) 808
Cac8I GCNNGC 3 cut(s) 993, 1203, 1326
CciI TCATGA 1 cut(s) 1338
CfoI GCGC 3 cut(s) 268, 435, 748
Cfr13I GGNCC 2 cut(s) 1155, 1382
Csp6I GTAC 2 cut(s) 633, 1463
CviAII CATG 7 cut(s) 132, 299, 776, 853, 1111, 1288, 1339
CviQI GTAC 2 cut(s) 633, 1463
DdeI CTNAG 6 cut(s) 507, 532, 564, 1251, 1497, 1572
DpnI GATC 4 cut(s) 297, 515, 539, 648
DpnII GATC 4 cut(s) 295, 513, 537, 646
DraI TTTAAA 1 cut(s) 889
DraIII CACNNNGTG 1 cut(s) 535
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Ecl136II GAGCTC 1 cut(s) 1344
Eco130I CCWWGG 2 cut(s) 411, 947
Eco24I GRGCYC 1 cut(s) 1346
Eco31I GGTCTC 1 cut(s) 363
Eco47I GGWCC 2 cut(s) 1155, 1382
Eco47III AGCGCT 2 cut(s) 434, 747
Eco53kI GAGCTC 1 cut(s) 1344
Eco57I CTGAAG 3 cut(s) 576, 1071, 1514
EcoICRI GAGCTC 1 cut(s) 1344
EcoRI GAATTC 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 1537
EcoT14I CCWWGG 2 cut(s) 411, 947
EcoT22I ATGCAT 1 cut(s) 71
EcoT38I GRGCYC 1 cut(s) 1346
ErhI CCWWGG 2 cut(s) 411, 947
FaeI CATG 7 cut(s) 135, 302, 779, 856, 1114, 1291, 1342
FalI AAGNNNNNCTT 2 cut(s) 678, 710
FaqI GGGAC 2 cut(s) 951, 1141
FatI CATG 7 cut(s) 131, 298, 775, 852, 1110, 1287, 1338
FauI CCCGC 1 cut(s) 1404
FauNDI CATATG 3 cut(s) 813, 1348, 1404
FbaI TGATCA 2 cut(s) 295, 537
Fnu4HI GCNGC 9 cut(s) 264, 960, 963, 972, 996, 1047, 1199, 1211, 1478
FokI GGATG 4 cut(s) 185, 534, 1093, 1545
FriOI GRGCYC 1 cut(s) 1346
Fsp4HI GCNGC 9 cut(s) 264, 960, 963, 972, 996, 1047, 1199, 1211, 1478
FspBI CTAG 7 cut(s) 318, 677, 906, 948, 1002, 1379, 1515
GlaI GCGC 3 cut(s) 267, 434, 747
GluI GCNGC 9 cut(s) 264, 960, 963, 972, 996, 1047, 1199, 1211, 1478
GsaI CCCAGC 2 cut(s) 64, 1477
GsuI CTGGAG 2 cut(s) 815, 1491
HaeII RGCGCY 2 cut(s) 436, 749
HaeIII GGCC 1 cut(s) 1460
HapII CCGG 1 cut(s) 367
HhaI GCGC 3 cut(s) 268, 435, 748
Hin1II CATG 7 cut(s) 135, 302, 779, 856, 1114, 1291, 1342
Hin6I GCGC 3 cut(s) 266, 433, 746
HinP1I GCGC 3 cut(s) 266, 433, 746
HincII GTYRAC 1 cut(s) 622
HindII GTYRAC 1 cut(s) 622
HindIII AAGCTT 1 cut(s) 989
HinfI GANTC 9 cut(s) 464, 785, 808, 864, 1133, 1255, 1411, 1429, 1450
HpaII CCGG 1 cut(s) 367
HphI GGTGA 2 cut(s) 92, 1420
Hpy166II GTNNAC 3 cut(s) 545, 622, 911
Hpy188I TCNGA 9 cut(s) 168, 449, 479, 790, 807, 1074, 1171, 1254, 1523
Hpy188III TCNNGA 3 cut(s) 43, 318, 1339
Hpy8I GTNNAC 3 cut(s) 545, 622, 911
HpyAV CCTTC 2 cut(s) 244, 281
HpyCH4III ACNGT 3 cut(s) 212, 310, 1556
HpyCH4IV ACGT 2 cut(s) 439, 1088
HpyF10VI GCNNNNNNNGC 9 cut(s) 46, 432, 842, 968, 971, 980, 1055, 1064, 1207
HpyF3I CTNAG 6 cut(s) 507, 532, 564, 1251, 1497, 1572
HpySE526I ACGT 2 cut(s) 439, 1088
Hsp92II CATG 7 cut(s) 135, 302, 779, 856, 1114, 1291, 1342
HspAI GCGC 3 cut(s) 266, 433, 746
Ksp22I TGATCA 2 cut(s) 295, 537
Kzo9I GATC 4 cut(s) 295, 513, 537, 646
LmnI GCTCC 3 cut(s) 369, 1359, 1516
Lsp1109I GCAGC 7 cut(s) 250, 946, 974, 982, 983, 1033, 1489
LweI GCATC 2 cut(s) 550, 1162
MaeI CTAG 7 cut(s) 318, 677, 906, 948, 1002, 1379, 1515
MaeII ACGT 2 cut(s) 439, 1088
MaeIII GTNAC 3 cut(s) 81, 124, 235
MalI GATC 4 cut(s) 297, 515, 539, 648
MboI GATC 4 cut(s) 295, 513, 537, 646
MfeI CAATTG 1 cut(s) 1013
MflI RGATCY 1 cut(s) 646
MhlI GDGCHC 2 cut(s) 367, 1346
MlyI GAGTC 4 cut(s) 802, 858, 1420, 1423
MmeI TCCRAC 3 cut(s) 307, 588, 1546
Mph1103I ATGCAT 1 cut(s) 71
MseI TTAA 4 cut(s) 720, 761, 888, 1493
MslI CAYNNNNRTG 3 cut(s) 88, 851, 1109
MspA1I CMGCKG 3 cut(s) 263, 506, 959
MspI CCGG 1 cut(s) 367
MspR9I CCNGG 2 cut(s) 367, 1539
MunI CAATTG 1 cut(s) 1013
Mva1269I GAATGC 1 cut(s) 1362
MvaI CCWGG 1 cut(s) 1539
MwoI GCNNNNNNNGC 9 cut(s) 46, 432, 842, 968, 971, 980, 1055, 1064, 1207
NciI CCSGG 1 cut(s) 367
NdeI CATATG 3 cut(s) 813, 1348, 1404
NdeII GATC 4 cut(s) 295, 513, 537, 646
NlaIII CATG 7 cut(s) 135, 302, 779, 856, 1114, 1291, 1342
NlaIV GGNNCC 4 cut(s) 371, 648, 1242, 1422
NmuCI GTSAC 1 cut(s) 81
NsiI ATGCAT 1 cut(s) 71
NspI RCATGY 2 cut(s) 856, 1291
OliI CACNNNNGTG 1 cut(s) 88
PagI TCATGA 1 cut(s) 1338
PctI GAATGC 1 cut(s) 1362
PfeI GAWTC 5 cut(s) 464, 785, 1133, 1255, 1450
PkrI GCNGC 9 cut(s) 265, 961, 964, 973, 997, 1048, 1200, 1212, 1479
PleI GAGTC 4 cut(s) 802, 858, 1419, 1423
PpsI GAGTC 4 cut(s) 802, 858, 1419, 1423
PshAI GACNNNNGTC 1 cut(s) 311
Psp124BI GAGCTC 1 cut(s) 1346
Psp6I CCWGG 1 cut(s) 1537
PspFI CCCAGC 2 cut(s) 60, 1473
PspGI CCWGG 1 cut(s) 1537
PspN4I GGNNCC 4 cut(s) 371, 648, 1242, 1422
PspPI GGNCC 2 cut(s) 1155, 1382
PstI CTGCAG 2 cut(s) 589, 964
PsuI RGATCY 1 cut(s) 646
PvuII CAGCTG 3 cut(s) 263, 506, 959
RsaI GTAC 2 cut(s) 634, 1464
RsaNI GTAC 2 cut(s) 633, 1463
RseI CAYNNNNRTG 3 cut(s) 88, 851, 1109
SacI GAGCTC 1 cut(s) 1346
SaqAI TTAA 4 cut(s) 720, 761, 888, 1493
SatI GCNGC 9 cut(s) 264, 960, 963, 972, 996, 1047, 1199, 1211, 1478
Sau3AI GATC 4 cut(s) 295, 513, 537, 646
Sau96I GGNCC 2 cut(s) 1155, 1382
SchI GAGTC 4 cut(s) 802, 858, 1420, 1423
ScrFI CCNGG 2 cut(s) 367, 1539
SduI GDGCHC 2 cut(s) 367, 1346
SfaNI GCATC 2 cut(s) 550, 1162
SfcI CTRYAG 3 cut(s) 203, 585, 960
SinI GGWCC 2 cut(s) 1155, 1382
SmiMI CAYNNNNRTG 3 cut(s) 88, 851, 1109
SmlI CTYRAG 1 cut(s) 1272
SmoI CTYRAG 1 cut(s) 1272
SpeI ACTAGT 1 cut(s) 905
SsiI CCGC 6 cut(s) 113, 655, 856, 1199, 1211, 1397
SspI AATATT 1 cut(s) 1316
SspMI CTAG 7 cut(s) 318, 677, 906, 948, 1002, 1379, 1515
SstI GAGCTC 1 cut(s) 1346
StyD4I CCNGG 2 cut(s) 365, 1537
StyI CCWWGG 2 cut(s) 411, 947
TaaI ACNGT 3 cut(s) 212, 310, 1556
TaiI ACGT 2 cut(s) 442, 1091
TaqI TCGA 1 cut(s) 44
TatI WGTACW 1 cut(s) 632
TauI GCSGC 2 cut(s) 1201, 1213
TfiI GAWTC 5 cut(s) 464, 785, 1133, 1255, 1450
Tru1I TTAA 4 cut(s) 720, 761, 888, 1493
Tru9I TTAA 4 cut(s) 720, 761, 888, 1493
TscAI CASTG 4 cut(s) 22, 540, 547, 559
TseFI GTSAC 1 cut(s) 81
TseI GCWGC 7 cut(s) 263, 959, 962, 971, 995, 1046, 1477
Tsp45I GTSAC 1 cut(s) 81
TspDTI ATGAA 8 cut(s) 17, 243, 581, 792, 888, 1089, 1212, 1463
TspRI CASTG 4 cut(s) 22, 540, 547, 559
VpaK11BI GGWCC 2 cut(s) 1155, 1382
XapI RAATTY 4 cut(s) 230, 416, 925, 1096
XbaI TCTAGA 1 cut(s) 317
XceI RCATGY 2 cut(s) 856, 1291
XcmI CCANNNNNNNNNTGG 1 cut(s) 973
XmaJI CCTAGG 1 cut(s) 947
XspI CTAG 7 cut(s) 318, 677, 906, 948, 1002, 1379, 1515
Zsp2I ATGCAT 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.