Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006547

Physical Location & Seq

Genomic Coordinates Reverse (-)

3297804 .. 3300165

Gene Structure 2362 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G10480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCGGGCTTTCTCTCCGTTGTCCGGCGCGTGTACCTCACTCTCTACAATTGGATCGTCTTTGCTGGATGGGCTCAGGTTTTGTACTTAGCGATAACGACGTTGAAGGAAACGGGTTATGAGAATGTCTATGACGCCATTGAGAAGCCTCTCCAGCTTGCTCAGACTGCCGCCGTTCTCGAGATTCTTCATGGATTAGTAGGTTTGGTCAGATCTCCTGTTTCTGCAACTCTGCCACAGATAGGTTCAAGGCTATTTCTCACTTGGGGCATCCTATACAGTTTTCCAGAGGTCCGATCTCATTTTCTTGTTACGTCGCTGGTCATAAGCTGGTCTATCACAGAGATTATTCGCTACTCATTCTTCGGCTTTAAGGAAGCTCTAGGCTTTGCACCTTCATGGCACTTGTGGCTCAGATACAGCAGCTTTTTATTGCTATACCCTACCGGTATCACCAGCGAAGTTGGTCTTATCTACCTTGCCTTACCACACATCAAGACATCGGAGATGTACAGCGTTAGGATGCCTAACATATTGAACTTCTCATTTGACTTCTTCTATGCAACGATACTCGTCCTTGCAATCTATGTCCCAGGTAGCCCACACATGTACAGGTACATGCTTGGTCAGCGAAAGAGAGCTCTCTCCAAATCCAAGAGGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018812 GO:0019752 GO:0030148 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032787 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046467 GO:0071704 GO:0072330 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00062 ko01040 ko01110 ko01212 map00062 map01040 map01110 map01212

Pfam Domains

Protein Families

PTPLA

Protein Analysis

221

Amino Acids

25.33

Weight (kDa)

9.57

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTPLA	PF04387	30 - 191	2.6e-59	Protein tyrosine phosphatase-like protein, PTPLA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10480 AT5G10480 AT5G10480
fragaria_vesca	FvH4_1g19690 FvH4_1g19690
malus_domestica	MD01G1038800.v1.1 MD04G1039300.v1.1 MD15G1312800.v1.1 MD15G1313000.v1.1
prunus_persica	Prupe.6G201300_v2.0.a1 Prupe.6G201300_v2.0.a1 Prupe.6G201300_v2.0.a1
pyrus_communis	pycom01g06670
rosa_chinensis	RchiOBHm_Chr2g0111251
rosa_laevigata	RLG00000017879
rosa_multiflora	Rmu_co8061266.1_g000001 Rmu_sc0001721.1_g000014 Rmu_sc0003055.1_g000014
rosa_roxburghii	Rroxscaffold_2G00132570
rosa_rugosa	Rorug02G0172000 Rorug02G0172100
rosa_samantha	Rh2AG225200 Rh2BG237000 Rh2CG228000 Rh2DG232600
rosa_wichuraiana	Rw2G017380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	30
AciI	CCGC	2 cut(s)	5, 171
AclWI	GGATC	1 cut(s)	62
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	5 cut(s)	35, 86, 512, 611, 617
AfiI	CCNNNNNNNGG	2 cut(s)	24, 242
AflIII	ACRYGT	1 cut(s)	606
AgeI	ACCGGT	1 cut(s)	446
AgsI	TTSAA	3 cut(s)	106, 249, 538
AjnI	CCWGG	1 cut(s)	592
AluBI	AGCT	5 cut(s)	157, 330, 380, 426, 641
AluI	AGCT	5 cut(s)	157, 330, 380, 426, 641
Alw21I	GWGCWC	1 cut(s)	643
AlwI	GGATC	1 cut(s)	62
Ama87I	CYCGRG	1 cut(s)	179
ApeKI	GCWGC	1 cut(s)	423
AsiGI	ACCGGT	1 cut(s)	446
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	445
AvaI	CYCGRG	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	292
BanII	GRGCYC	2 cut(s)	76, 643
Bbv12I	GWGCWC	1 cut(s)	643
BbvI	GCAGC	1 cut(s)	435
BccI	CCATC	1 cut(s)	63
BceAI	ACGGC	1 cut(s)	158
BciT130I	CCWGG	1 cut(s)	594
BfaI	CTAG	1 cut(s)	383
BglII	AGATCT	1 cut(s)	212
BisI	GCNGC	2 cut(s)	171, 424
BlsI	GCNGC	2 cut(s)	172, 425
Bme1390I	CCNGG	1 cut(s)	594
Bme18I	GGWCC	1 cut(s)	292
BmeT110I	CYCGRG	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	292
BmrFI	CCNGG	1 cut(s)	594
BmsI	GCATC	2 cut(s)	279, 513
BpmI	CTGGAG	1 cut(s)	137
Bpu10I	CCTNAGC	1 cut(s)	75
BsaHI	GRCGYC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	592
BsaWI	WCCGGW	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 242
Bse118I	RCCGGY	1 cut(s)	446
BseBI	CCWGG	1 cut(s)	594
BseDI	CCNNGG	1 cut(s)	592
BseGI	GGATG	3 cut(s)	74, 270, 528
BseLI	CCNNNNNNNGG	2 cut(s)	24, 242
BseMII	CTCAG	3 cut(s)	89, 176, 427
BseXI	GCAGC	1 cut(s)	435
Bsh1236I	CGCG	1 cut(s)	30
BshTI	ACCGGT	1 cut(s)	446
BsiHKAI	GWGCWC	1 cut(s)	643
BsiHKCI	CYCGRG	1 cut(s)	179
BsiSI	CCGG	2 cut(s)	25, 447
BslFI	GGGAC	1 cut(s)	575
BslI	CCNNNNNNNGG	2 cut(s)	24, 242
BsmFI	GGGAC	1 cut(s)	575
BsoBI	CYCGRG	1 cut(s)	179
Bsp1286I	GDGCHC	2 cut(s)	76, 643
Bsp1407I	TGTACA	2 cut(s)	510, 609
Bsp143I	GATC	3 cut(s)	54, 212, 296
BspACI	CCGC	2 cut(s)	5, 171
BspCNI	CTCAG	3 cut(s)	88, 175, 426
BspFNI	CGCG	1 cut(s)	30
BspPI	GGATC	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	446
BsrGI	TGTACA	2 cut(s)	510, 609
BssAI	RCCGGY	1 cut(s)	446
BssECI	CCNNGG	1 cut(s)	592
BssMI	GATC	3 cut(s)	54, 212, 296
BssNI	GRCGYC	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	594
Bst4CI	ACNGT	1 cut(s)	281
BstACI	GRCGYC	1 cut(s)	135
BstAUI	TGTACA	2 cut(s)	510, 609
BstC8I	GCNNGC	2 cut(s)	7, 159
BstDEI	CTNAG	4 cut(s)	75, 88, 162, 413
BstF5I	GGATG	3 cut(s)	74, 270, 528
BstFNI	CGCG	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	3 cut(s)	57, 215, 299
BstMBI	GATC	3 cut(s)	54, 212, 296
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 154, 167, 409, 628
BstNI	CCWGG	1 cut(s)	594
BstNSI	RCATGY	2 cut(s)	610, 622
BstSCI	CCNGG	1 cut(s)	592
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	435
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BtsCI	GGATG	3 cut(s)	74, 270, 528
Cac8I	GCNNGC	2 cut(s)	7, 159
CfoI	GCGC	1 cut(s)	30
Cfr10I	RCCGGY	1 cut(s)	446
Cfr13I	GGNCC	1 cut(s)	292
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	5 cut(s)	34, 85, 511, 610, 616
CspAI	ACCGGT	1 cut(s)	446
CviAII	CATG	4 cut(s)	191, 399, 607, 619
CviQI	GTAC	5 cut(s)	34, 85, 511, 610, 616
DdeI	CTNAG	4 cut(s)	75, 88, 162, 413
DpnI	GATC	3 cut(s)	56, 214, 298
DpnII	GATC	3 cut(s)	54, 212, 296
Ecl136II	GAGCTC	1 cut(s)	641
Eco24I	GRGCYC	2 cut(s)	76, 643
Eco47I	GGWCC	1 cut(s)	292
Eco53kI	GAGCTC	1 cut(s)	641
Eco88I	CYCGRG	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	641
EcoRII	CCWGG	1 cut(s)	592
EcoT38I	GRGCYC	2 cut(s)	76, 643
FaeI	CATG	4 cut(s)	194, 402, 610, 622
FalI	AAGNNNNNCTT	2 cut(s)	453, 485
FaqI	GGGAC	1 cut(s)	575
FatI	CATG	4 cut(s)	190, 398, 606, 618
Fnu4HI	GCNGC	2 cut(s)	171, 424
FokI	GGATG	3 cut(s)	81, 257, 535
FriOI	GRGCYC	2 cut(s)	76, 643
Fsp4HI	GCNGC	2 cut(s)	171, 424
FspBI	CTAG	1 cut(s)	383
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	2 cut(s)	171, 424
GsuI	CTGGAG	1 cut(s)	137
HapII	CCGG	2 cut(s)	25, 447
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	1 cut(s)	30
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	4 cut(s)	194, 402, 610, 622
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HinfI	GANTC	1 cut(s)	184
HpaII	CCGG	2 cut(s)	25, 447
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	5 cut(s)	165, 212, 296, 416, 505
Hpy188III	TCNNGA	4 cut(s)	179, 181, 287, 496
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	2 cut(s)	103, 319
HpyAV	CCTTC	2 cut(s)	100, 405
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4IV	ACGT	2 cut(s)	101, 314
HpyCH4V	TGCA	4 cut(s)	227, 392, 563, 581
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 154, 167, 409, 628
HpyF3I	CTNAG	4 cut(s)	75, 88, 162, 413
HpySE526I	ACGT	2 cut(s)	101, 314
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	4 cut(s)	194, 402, 610, 622
HspAI	GCGC	1 cut(s)	28
Kzo9I	GATC	3 cut(s)	54, 212, 296
Lsp1109I	GCAGC	1 cut(s)	435
LweI	GCATC	2 cut(s)	279, 513
MaeI	CTAG	1 cut(s)	383
MaeII	ACGT	2 cut(s)	101, 314
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	3 cut(s)	56, 214, 298
MboI	GATC	3 cut(s)	54, 212, 296
MboII	GAAGA	3 cut(s)	179, 355, 547
MfeI	CAATTG	1 cut(s)	49
MflI	RGATCY	1 cut(s)	212
MhlI	GDGCHC	2 cut(s)	76, 643
MluCI	AATT	1 cut(s)	49
MnlI	CCTC	4 cut(s)	47, 159, 283, 651
MseI	TTAA	1 cut(s)	372
MslI	CAYNNNNRTG	1 cut(s)	397
MspI	CCGG	2 cut(s)	25, 447
MspR9I	CCNGG	1 cut(s)	594
MunI	CAATTG	1 cut(s)	49
MvaI	CCWGG	1 cut(s)	594
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	5 cut(s)	71, 154, 167, 409, 628
NdeII	GATC	3 cut(s)	54, 212, 296
NlaIII	CATG	4 cut(s)	194, 402, 610, 622
NspI	RCATGY	2 cut(s)	610, 622
PaeR7I	CTCGAG	1 cut(s)	179
PciI	ACATGT	1 cut(s)	606
PfeI	GAWTC	1 cut(s)	184
PinAI	ACCGGT	1 cut(s)	446
PkrI	GCNGC	2 cut(s)	172, 425
PscI	ACATGT	1 cut(s)	606
Psp124BI	GAGCTC	1 cut(s)	643
Psp6I	CCWGG	1 cut(s)	592
PspGI	CCWGG	1 cut(s)	592
PspPI	GGNCC	1 cut(s)	292
PsuI	RGATCY	1 cut(s)	212
RsaI	GTAC	5 cut(s)	35, 86, 512, 611, 617
RsaNI	GTAC	5 cut(s)	34, 85, 511, 610, 616
RseI	CAYNNNNRTG	1 cut(s)	397
SacI	GAGCTC	1 cut(s)	643
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	2 cut(s)	171, 424
Sau3AI	GATC	3 cut(s)	54, 212, 296
Sau96I	GGNCC	1 cut(s)	292
ScrFI	CCNGG	1 cut(s)	594
SduI	GDGCHC	2 cut(s)	76, 643
SfaNI	GCATC	2 cut(s)	279, 513
Sfr274I	CTCGAG	1 cut(s)	179
SinI	GGWCC	1 cut(s)	292
SlaI	CTCGAG	1 cut(s)	179
SmiMI	CAYNNNNRTG	1 cut(s)	397
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	1 cut(s)	49
SsiI	CCGC	2 cut(s)	5, 171
SspMI	CTAG	1 cut(s)	383
SstI	GAGCTC	1 cut(s)	643
StyD4I	CCNGG	1 cut(s)	592
TaaI	ACNGT	1 cut(s)	281
TaiI	ACGT	2 cut(s)	104, 317
TaqI	TCGA	1 cut(s)	180
TasI	AATT	1 cut(s)	49
TatI	WGTACW	3 cut(s)	84, 510, 609
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TseI	GCWGC	1 cut(s)	423
TspDTI	ATGAA	2 cut(s)	179, 387
TspGWI	ACGGA	1 cut(s)	7
VpaK11BI	GGWCC	1 cut(s)	292
XceI	RCATGY	2 cut(s)	610, 622
XhoI	CTCGAG	1 cut(s)	179
XspI	CTAG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.