Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003055.1

Orthogroup ID

OG0006547

Physical Location & Seq

Genomic Coordinates Forward (+)

50661 .. 52453

Gene Structure 1793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003055.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atgacatcgccggagcaaggatttccgatcgggtctgaatacctcaaacattgccaccttacagcgctgtcgtggaggagaatcaccggtagaggccaccatagggaggagcagaacaaggtggcgagttggtctggaaagtttcaccagcagaggtcgccggagattgtcgataaagccgggtcgagtcggccagatcctggtctaggtacggctttcatggcgggatctttgtctcttctcctcagacggctttacctttccctctacaactggaccctcttcatcggatggtctcaggtgctgtatcttgctgtgaagacacttcgggaatcgggccccgagcaggtttacaatgccctcgaccgcccacttcagtttgctcaatccgccgcgtttttggagattcttcatggcttagtgggtttggtgagatctcctataacagccacactgccacagattagttcgaggttgtttctggtttgggggatcctgtggagctttcctgaggttggtatgaagattcagagttgtagtcacatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018812 GO:0019752 GO:0030148 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032787 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046467 GO:0071704 GO:0072330 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00062 ko01040 ko01110 ko01212 map00062 map01040 map01110 map01212

Pfam Domains

Protein Families

PTPLA

Protein Analysis

182

Amino Acids

20.47

Weight (kDa)

9.64

Isoelectric Point (pI)

63.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10480 AT5G10480 AT5G10480
fragaria_vesca	FvH4_1g19690 FvH4_1g19690
malus_domestica	MD01G1038800.v1.1 MD04G1039300.v1.1 MD15G1312800.v1.1 MD15G1313000.v1.1
prunus_persica	Prupe.6G201300_v2.0.a1 Prupe.6G201300_v2.0.a1 Prupe.6G201300_v2.0.a1
pyrus_communis	pycom01g06670
rosa_chinensis	RchiOBHm_Chr2g0111251
rosa_laevigata	RLG00000017879
rosa_multiflora	Rmu_co8061266.1_g000001 Rmu_sc0001721.1_g000014 Rmu_sc0003055.1_g000014
rosa_roxburghii	Rroxscaffold_2G00132570
rosa_rugosa	Rorug02G0172000 Rorug02G0172100
rosa_samantha	Rh2AG225200 Rh2BG237000 Rh2CG228000 Rh2DG232600
rosa_wichuraiana	Rw2G017380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	337
AccB7I	CCANNNNNTGG	1 cut(s)	200
AccII	CGCG	1 cut(s)	395
AciI	CCGC	4 cut(s)	224, 367, 390, 393
AclWI	GGATC	4 cut(s)	191, 235, 487, 500
AcoI	YGGCCR	1 cut(s)	191
AcuI	CTGAAG	1 cut(s)	359
AfaI	GTAC	1 cut(s)	211
AfeI	AGCGCT	1 cut(s)	66
AfiI	CCNNNNNNNGG	7 cut(s)	17, 103, 106, 200, 206, 346, 515
AgeI	ACCGGT	1 cut(s)	86
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	1 cut(s)	504
AluI	AGCT	1 cut(s)	504
Alw26I	GTCTC	2 cut(s)	240, 300
AlwI	GGATC	4 cut(s)	191, 235, 487, 500
AlwNI	CAGNNNCTG	2 cut(s)	200, 304
Ama87I	CYCGRG	1 cut(s)	341
Aor51HI	AGCGCT	1 cut(s)	66
AoxI	GGCC	3 cut(s)	94, 191, 337
ApaI	GGGCCC	1 cut(s)	341
AsiGI	ACCGGT	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	3 cut(s)	276, 337, 338
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	3 cut(s)	76, 137, 442
AvaI	CYCGRG	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	276
AxyI	CCTNAGG	1 cut(s)	510
BaeGI	GKGCMC	1 cut(s)	341
BamHI	GGATCC	1 cut(s)	492
BanII	GRGCYC	1 cut(s)	341
BbsI	GAAGAC	1 cut(s)	326
BccI	CCATC	1 cut(s)	285
BceAI	ACGGC	2 cut(s)	228, 266
BciT130I	CCWGG	1 cut(s)	201
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	2 cut(s)	240, 300
BfaI	CTAG	1 cut(s)	206
BfoI	RGCGCY	1 cut(s)	68
BfuAI	ACCTGC	1 cut(s)	337
BglII	AGATCT	1 cut(s)	434
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
Bme1390I	CCNGG	2 cut(s)	181, 201
Bme18I	GGWCC	1 cut(s)	276
BmeT110I	CYCGRG	1 cut(s)	341
BmgT120I	GGNCC	3 cut(s)	276, 337, 338
BmiI	GGNNCC	4 cut(s)	278, 339, 340, 494
BmrFI	CCNGG	2 cut(s)	181, 201
BpiI	GAAGAC	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	181
BsaI	GGTCTC	1 cut(s)	300
BsaWI	WCCGGW	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	7 cut(s)	17, 103, 106, 200, 206, 346, 515
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	278
Bse21I	CCTNAGG	1 cut(s)	510
Bse3DI	GCAATG	1 cut(s)	49
BseBI	CCWGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	296
BseLI	CCNNNNNNNGG	7 cut(s)	17, 103, 106, 200, 206, 346, 515
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	3 cut(s)	259, 311, 501
BseNI	ACTGG	1 cut(s)	278
BseRI	GAGGAG	3 cut(s)	91, 122, 233
BseSI	GKGCMC	1 cut(s)	341
Bsh1236I	CGCG	1 cut(s)	395
Bsh1285I	CGRYCG	2 cut(s)	30, 367
BshFI	GGCC	3 cut(s)	96, 193, 339
BshTI	ACCGGT	1 cut(s)	86
BsiEI	CGRYCG	2 cut(s)	30, 367
BsiHKCI	CYCGRG	1 cut(s)	341
BsiSI	CCGG	4 cut(s)	11, 87, 161, 180
BslI	CCNNNNNNNGG	7 cut(s)	17, 103, 106, 200, 206, 346, 515
BsmAI	GTCTC	2 cut(s)	240, 300
BsnI	GGCC	3 cut(s)	96, 193, 339
Bso31I	GGTCTC	1 cut(s)	300
BsoBI	CYCGRG	1 cut(s)	341
Bsp120I	GGGCCC	1 cut(s)	337
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp143I	GATC	5 cut(s)	27, 196, 227, 434, 492
BspACI	CCGC	4 cut(s)	224, 367, 390, 393
BspANI	GGCC	3 cut(s)	96, 193, 339
BspCNI	CTCAG	3 cut(s)	258, 310, 502
BspFNI	CGCG	1 cut(s)	395
BspLI	GGNNCC	4 cut(s)	278, 339, 340, 494
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	4 cut(s)	191, 235, 487, 500
BspTNI	GGTCTC	1 cut(s)	300
BsrDI	GCAATG	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	278
BssAI	RCCGGY	1 cut(s)	86
BssMI	GATC	5 cut(s)	27, 196, 227, 434, 492
Bst2UI	CCWGG	1 cut(s)	201
Bst6I	CTCTTC	2 cut(s)	243, 287
BstDEI	CTNAG	4 cut(s)	245, 297, 418, 510
BstENI	CCTNNNNNAGG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	296
BstFNI	CGCG	1 cut(s)	395
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	5 cut(s)	30, 199, 230, 437, 495
BstMAI	GTCTC	2 cut(s)	240, 300
BstMBI	GATC	5 cut(s)	27, 196, 227, 434, 492
BstMCI	CGRYCG	2 cut(s)	30, 367
BstMWI	GCNNNNNNNGC	3 cut(s)	157, 221, 389
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	2 cut(s)	179, 199
BstSLI	GKGCMC	1 cut(s)	341
BstUI	CGCG	1 cut(s)	395
BstV2I	GAAGAC	1 cut(s)	326
BstX2I	RGATCY	4 cut(s)	196, 227, 434, 492
BstYI	RGATCY	4 cut(s)	196, 227, 434, 492
Bsu36I	CCTNAGG	1 cut(s)	510
BsuRI	GGCC	3 cut(s)	96, 193, 339
BtsCI	GGATG	1 cut(s)	296
BtsI	GCAGTG	1 cut(s)	452
BtsIMutI	CAGTG	1 cut(s)	452
BveI	ACCTGC	1 cut(s)	337
CaiI	CAGNNNCTG	2 cut(s)	200, 304
CfoI	GCGC	1 cut(s)	67
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	3 cut(s)	276, 337, 338
Csp6I	GTAC	1 cut(s)	210
CspAI	ACCGGT	1 cut(s)	86
CviAII	CATG	2 cut(s)	220, 413
CviJI	RGCY	9 cut(s)	96, 179, 193, 215, 253, 339, 417, 449, 504
CviKI_1	RGCY	9 cut(s)	96, 179, 193, 215, 253, 339, 417, 449, 504
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	4 cut(s)	245, 297, 418, 510
DpnI	GATC	5 cut(s)	29, 198, 229, 436, 494
DpnII	GATC	5 cut(s)	27, 196, 227, 434, 492
EaeI	YGGCCR	1 cut(s)	191
Eam1104I	CTCTTC	2 cut(s)	243, 287
EarI	CTCTTC	2 cut(s)	243, 287
EciI	GGCGGA	1 cut(s)	379
Eco24I	GRGCYC	1 cut(s)	341
Eco31I	GGTCTC	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	276
Eco47III	AGCGCT	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	359
Eco81I	CCTNAGG	1 cut(s)	510
Eco88I	CYCGRG	1 cut(s)	341
EcoNI	CCTNNNNNAGG	1 cut(s)	204
EcoO109I	RGGNCCY	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	341
FaeI	CATG	2 cut(s)	223, 416
FaiI	YATR	5 cut(s)	102, 221, 414, 443, 521
FatI	CATG	2 cut(s)	219, 412
FauI	CCCGC	1 cut(s)	217
Fnu4HI	GCNGC	1 cut(s)	393
FokI	GGATG	1 cut(s)	303
FriOI	GRGCYC	1 cut(s)	341
Fsp4HI	GCNGC	1 cut(s)	393
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	393
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	3 cut(s)	96, 193, 339
HapII	CCGG	4 cut(s)	11, 87, 161, 180
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	2 cut(s)	223, 416
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HinfI	GANTC	5 cut(s)	81, 187, 332, 406, 526
HpaII	CCGG	4 cut(s)	11, 87, 161, 180
HphI	GGTGA	3 cut(s)	76, 137, 442
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	5 cut(s)	27, 37, 248, 290, 531
Hpy188III	TCNNGA	3 cut(s)	135, 329, 509
Hpy8I	GTNNAC	1 cut(s)	352
HpyF10VI	GCNNNNNNNGC	3 cut(s)	157, 221, 389
HpyF3I	CTNAG	4 cut(s)	245, 297, 418, 510
Hsp92II	CATG	2 cut(s)	223, 416
HspAI	GCGC	1 cut(s)	65
Kzo9I	GATC	5 cut(s)	27, 196, 227, 434, 492
LmnI	GCTCC	3 cut(s)	13, 109, 501
MaeI	CTAG	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	539
MalI	GATC	5 cut(s)	29, 198, 229, 436, 494
MboI	GATC	5 cut(s)	27, 196, 227, 434, 492
MboII	GAAGA	5 cut(s)	230, 274, 331, 401, 535
MflI	RGATCY	4 cut(s)	196, 227, 434, 492
MhlI	GDGCHC	1 cut(s)	341
MlyI	GAGTC	1 cut(s)	196
MspI	CCGG	4 cut(s)	11, 87, 161, 180
MspR9I	CCNGG	2 cut(s)	181, 201
MvaI	CCWGG	1 cut(s)	201
MvnI	CGCG	1 cut(s)	395
MwoI	GCNNNNNNNGC	3 cut(s)	157, 221, 389
NciI	CCSGG	1 cut(s)	181
NdeII	GATC	5 cut(s)	27, 196, 227, 434, 492
NlaIII	CATG	2 cut(s)	223, 416
NlaIV	GGNNCC	4 cut(s)	278, 339, 340, 494
NmuCI	GTSAC	1 cut(s)	539
PfeI	GAWTC	4 cut(s)	81, 332, 406, 526
PflMI	CCANNNNNTGG	1 cut(s)	200
PinAI	ACCGGT	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	394
Ple19I	CGATCG	1 cut(s)	30
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	4 cut(s)	278, 339, 340, 494
PspOMI	GGGCCC	1 cut(s)	337
PspPI	GGNCC	3 cut(s)	276, 337, 338
PstNI	CAGNNNCTG	2 cut(s)	200, 304
PsuI	RGATCY	4 cut(s)	196, 227, 434, 492
PvuI	CGATCG	1 cut(s)	30
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	5 cut(s)	27, 196, 227, 434, 492
Sau96I	GGNCC	3 cut(s)	276, 337, 338
SchI	GAGTC	1 cut(s)	196
ScrFI	CCNGG	2 cut(s)	181, 201
SduI	GDGCHC	1 cut(s)	341
SinI	GGWCC	1 cut(s)	276
SsiI	CCGC	4 cut(s)	224, 367, 390, 393
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	2 cut(s)	179, 199
TaqI	TCGA	4 cut(s)	171, 185, 363, 470
TauI	GCSGC	1 cut(s)	395
TfiI	GAWTC	4 cut(s)	81, 332, 406, 526
TscAI	CASTG	1 cut(s)	459
TseFI	GTSAC	1 cut(s)	539
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	4 cut(s)	208, 274, 401, 536
TspRI	CASTG	1 cut(s)	459
Van91I	CCANNNNNTGG	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	276
XagI	CCTNNNNNAGG	1 cut(s)	204
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.