Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006547

Physical Location & Seq

Genomic Coordinates Forward (+)

23556622 .. 23560468

Gene Structure 3847 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG237000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGACCATTAAAGACCATGGCAGACGAAACTTACAAGTTGAAGTGGTTGCAACGTTGAGCTACTCACCTGCACATTTGTCTGACTCTTTATTACACGCTAGCCTGGTTGGCTATATATTATTAGAAAGAGGGGTGCTGGTGCTGGTGCTGGTGCTTGCTTCTTTGGATCCACCACAGTGTACGGCTTTCATGGCGGGATCTTTGTCTCTTCTTCTCAGACGGCTTTACCTTTCCCTCTACAACTGGACCCTCTTCATCGGATGGTCTCAGGTGCTGTATCTTGCTGTGAAGACACTTCGGGAATCGGGCCCCGAGCAGGTTTACAATGCCCTCGACCGCCCACTTCAGTTTGCTCAATCCGCCGCGTTTTTGGAGATTCTTCATGGCTTAGTGGGTTTGGTGAGATCCCCTATAACAGCCACACTGCCACAGATTAGTTCGAGGTTGTTTCTGGTTTGGGGGATCCTGTGGAGCTTTCCTGAGACTCAGAGTCATGTCCTTGTGAGCTCTTTGGTCATCAGCTGGTCCATCACTGAGATTATTCGATACTCTTTCTATGGCATGAAAGAGACTCTTGGTTTTGCGCCTTCTTGGCTCCAGTGGCTCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018812 GO:0019752 GO:0030148 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032787 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046467 GO:0071704 GO:0072330 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00062 ko01040 ko01110 ko01212 map00062 map01040 map01110 map01212

Pfam Domains

Protein Families

PTPLA

Protein Analysis

203

Amino Acids

22.86

Weight (kDa)

8.79

Isoelectric Point (pI)

54.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTPLA	PF04387	119 - 203	9.9e-29	Protein tyrosine phosphatase-like protein, PTPLA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10480 AT5G10480 AT5G10480
fragaria_vesca	FvH4_1g19690 FvH4_1g19690
malus_domestica	MD01G1038800.v1.1 MD04G1039300.v1.1 MD15G1312800.v1.1 MD15G1313000.v1.1
prunus_persica	Prupe.6G201300_v2.0.a1 Prupe.6G201300_v2.0.a1 Prupe.6G201300_v2.0.a1
pyrus_communis	pycom01g06670
rosa_chinensis	RchiOBHm_Chr2g0111251
rosa_laevigata	RLG00000017879
rosa_multiflora	Rmu_co8061266.1_g000001 Rmu_sc0001721.1_g000014 Rmu_sc0003055.1_g000014
rosa_roxburghii	Rroxscaffold_2G00132570
rosa_rugosa	Rorug02G0172000 Rorug02G0172100
rosa_samantha	Rh2AG225200 Rh2BG237000 Rh2CG228000 Rh2DG232600
rosa_wichuraiana	Rw2G017380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	76
Acc36I	ACCTGC	2 cut(s)	76, 307
AccII	CGCG	1 cut(s)	365
AciI	CCGC	4 cut(s)	194, 337, 360, 363
AclI	AACGTT	1 cut(s)	53
AclWI	GGATC	6 cut(s)	161, 174, 205, 399, 457, 470
AcuI	CTGAAG	1 cut(s)	329
AfaI	GTAC	1 cut(s)	181
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgsI	TTSAA	1 cut(s)	41
AhdI	GACNNNNNGTC	1 cut(s)	489
AjnI	CCWGG	1 cut(s)	102
AleI	CACNNNNGTG	1 cut(s)	175
AluBI	AGCT	4 cut(s)	60, 474, 507, 522
AluI	AGCT	4 cut(s)	60, 474, 507, 522
Alw21I	GWGCWC	1 cut(s)	509
Alw26I	GTCTC	4 cut(s)	210, 270, 476, 563
AlwI	GGATC	6 cut(s)	161, 174, 205, 399, 457, 470
AlwNI	CAGNNNCTG	1 cut(s)	274
Ama87I	CYCGRG	1 cut(s)	311
AoxI	GGCC	1 cut(s)	307
ApaI	GGGCCC	1 cut(s)	311
AspLEI	GCGC	1 cut(s)	586
AspS9I	GGNCC	4 cut(s)	246, 307, 308, 525
AsuHPI	GGTGA	2 cut(s)	57, 412
AsuNHI	GCTAGC	1 cut(s)	98
AvaI	CYCGRG	1 cut(s)	311
AvaII	GGWCC	2 cut(s)	246, 525
BaeGI	GKGCMC	1 cut(s)	311
BamHI	GGATCC	2 cut(s)	166, 462
BanII	GRGCYC	2 cut(s)	311, 509
BbsI	GAAGAC	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	509
BccI	CCATC	2 cut(s)	255, 536
BceAI	ACGGC	2 cut(s)	198, 236
BciT130I	CCWGG	1 cut(s)	104
BcoDI	GTCTC	4 cut(s)	210, 270, 476, 563
BfaI	CTAG	1 cut(s)	99
BfuAI	ACCTGC	2 cut(s)	76, 307
BglI	GCCNNNNNGGC	2 cut(s)	108, 592
BisI	GCNGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	364
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	2 cut(s)	246, 525
BmeRI	GACNNNNNGTC	1 cut(s)	489
BmeT110I	CYCGRG	1 cut(s)	311
BmgT120I	GGNCC	4 cut(s)	246, 307, 308, 525
BmiI	GGNNCC	6 cut(s)	168, 248, 309, 310, 464, 596
BmrFI	CCNGG	1 cut(s)	104
BmtI	GCTAGC	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	296
BpmI	CTGGAG	1 cut(s)	581
Bpu10I	CCTNAGC	1 cut(s)	605
BsaI	GGTCTC	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse1I	ACTGG	2 cut(s)	248, 598
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	1 cut(s)	266
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMII	CTCAG	5 cut(s)	229, 281, 471, 500, 525
BseNI	ACTGG	2 cut(s)	248, 598
BseSI	GKGCMC	1 cut(s)	311
BsgI	GTGCAG	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	365
Bsh1285I	CGRYCG	1 cut(s)	337
BshFI	GGCC	1 cut(s)	309
BsiEI	CGRYCG	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	509
BsiHKCI	CYCGRG	1 cut(s)	311
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	4 cut(s)	210, 270, 476, 563
BsnI	GGCC	1 cut(s)	309
Bso31I	GGTCTC	1 cut(s)	270
BsoBI	CYCGRG	1 cut(s)	311
Bsp120I	GGGCCC	1 cut(s)	307
Bsp1286I	GDGCHC	2 cut(s)	311, 509
Bsp143I	GATC	4 cut(s)	166, 197, 404, 462
Bsp19I	CCATGG	1 cut(s)	16
BspACI	CCGC	4 cut(s)	194, 337, 360, 363
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	5 cut(s)	228, 280, 472, 499, 526
BspFNI	CGCG	1 cut(s)	365
BspLI	GGNNCC	6 cut(s)	168, 248, 309, 310, 464, 596
BspMI	ACCTGC	2 cut(s)	76, 307
BspOI	GCTAGC	1 cut(s)	102
BspPI	GGATC	6 cut(s)	161, 174, 205, 399, 457, 470
BspTNI	GGTCTC	1 cut(s)	270
BsrI	ACTGG	2 cut(s)	248, 598
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	4 cut(s)	166, 197, 404, 462
BssT1I	CCWWGG	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	177
Bst6I	CTCTTC	2 cut(s)	213, 257
BstC8I	GCNNGC	2 cut(s)	100, 156
BstDEI	CTNAG	7 cut(s)	215, 267, 388, 480, 486, 534, 605
BstDSI	CCRYGG	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	266
BstFNI	CGCG	1 cut(s)	365
BstHHI	GCGC	1 cut(s)	586
BstKTI	GATC	4 cut(s)	169, 200, 407, 465
BstMAI	GTCTC	4 cut(s)	210, 270, 476, 563
BstMBI	GATC	4 cut(s)	166, 197, 404, 462
BstMCI	CGRYCG	1 cut(s)	337
BstMWI	GCNNNNNNNGC	5 cut(s)	108, 191, 359, 592, 601
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	102
BstSLI	GKGCMC	1 cut(s)	311
BstUI	CGCG	1 cut(s)	365
BstV2I	GAAGAC	1 cut(s)	296
BstX2I	RGATCY	4 cut(s)	166, 197, 404, 462
BstYI	RGATCY	4 cut(s)	166, 197, 404, 462
BsuRI	GGCC	1 cut(s)	309
BtgI	CCRYGG	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	266
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	4 cut(s)	182, 422, 531, 605
BveI	ACCTGC	2 cut(s)	76, 307
Cac8I	GCNNGC	2 cut(s)	100, 156
CaiI	CAGNNNCTG	1 cut(s)	274
CfoI	GCGC	1 cut(s)	586
Cfr13I	GGNCC	4 cut(s)	246, 307, 308, 525
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	5 cut(s)	17, 190, 383, 494, 562
CviQI	GTAC	1 cut(s)	180
DdeI	CTNAG	7 cut(s)	215, 267, 388, 480, 486, 534, 605
DpnI	GATC	4 cut(s)	168, 199, 406, 464
DpnII	GATC	4 cut(s)	166, 197, 404, 462
DriI	GACNNNNNGTC	1 cut(s)	489
Eam1104I	CTCTTC	2 cut(s)	213, 257
Eam1105I	GACNNNNNGTC	1 cut(s)	489
EarI	CTCTTC	2 cut(s)	213, 257
EciI	GGCGGA	1 cut(s)	349
Ecl136II	GAGCTC	1 cut(s)	507
Eco130I	CCWWGG	1 cut(s)	16
Eco24I	GRGCYC	2 cut(s)	311, 509
Eco31I	GGTCTC	1 cut(s)	270
Eco47I	GGWCC	2 cut(s)	246, 525
Eco53kI	GAGCTC	1 cut(s)	507
Eco57I	CTGAAG	1 cut(s)	329
Eco88I	CYCGRG	1 cut(s)	311
EcoICRI	GAGCTC	1 cut(s)	507
EcoO109I	RGGNCCY	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	16
EcoT38I	GRGCYC	2 cut(s)	311, 509
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	5 cut(s)	20, 193, 386, 497, 565
FaiI	YATR	9 cut(s)	18, 114, 116, 191, 384, 413, 495, 558, 563
FalI	AAGNNNNNCTT	2 cut(s)	558, 590
FatI	CATG	5 cut(s)	16, 189, 382, 493, 561
FauI	CCCGC	1 cut(s)	187
Fnu4HI	GCNGC	1 cut(s)	363
FokI	GGATG	1 cut(s)	273
FriOI	GRGCYC	2 cut(s)	311, 509
Fsp4HI	GCNGC	1 cut(s)	363
FspBI	CTAG	1 cut(s)	99
GlaI	GCGC	1 cut(s)	585
GluI	GCNGC	1 cut(s)	363
GsuI	CTGGAG	1 cut(s)	581
HaeIII	GGCC	1 cut(s)	309
HhaI	GCGC	1 cut(s)	586
Hin1II	CATG	5 cut(s)	20, 193, 386, 497, 565
Hin6I	GCGC	1 cut(s)	584
HinP1I	GCGC	1 cut(s)	584
HinfI	GANTC	6 cut(s)	83, 302, 376, 484, 490, 571
HphI	GGTGA	2 cut(s)	57, 412
Hpy166II	GTNNAC	2 cut(s)	180, 322
Hpy188I	TCNGA	4 cut(s)	82, 218, 260, 489
Hpy188III	TCNNGA	2 cut(s)	299, 479
Hpy8I	GTNNAC	2 cut(s)	180, 322
HpyAV	CCTTC	1 cut(s)	597
HpyCH4III	ACNGT	1 cut(s)	177
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	2 cut(s)	50, 71
HpyF10VI	GCNNNNNNNGC	5 cut(s)	108, 191, 359, 592, 601
HpyF3I	CTNAG	7 cut(s)	215, 267, 388, 480, 486, 534, 605
HpySE526I	ACGT	1 cut(s)	53
Hsp92II	CATG	5 cut(s)	20, 193, 386, 497, 565
HspAI	GCGC	1 cut(s)	584
Kzo9I	GATC	4 cut(s)	166, 197, 404, 462
LmnI	GCTCC	2 cut(s)	471, 600
MaeI	CTAG	1 cut(s)	99
MaeII	ACGT	1 cut(s)	53
MalI	GATC	4 cut(s)	168, 199, 406, 464
MboI	GATC	4 cut(s)	166, 197, 404, 462
MboII	GAAGA	5 cut(s)	200, 203, 244, 301, 371
MflI	RGATCY	4 cut(s)	166, 197, 404, 462
MhlI	GDGCHC	2 cut(s)	311, 509
MlyI	GAGTC	4 cut(s)	77, 478, 499, 565
MnlI	CCTC	5 cut(s)	122, 245, 260, 341, 435
MseI	TTAA	1 cut(s)	9
MslI	CAYNNNNRTG	1 cut(s)	175
MspA1I	CMGCKG	1 cut(s)	522
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	365
MwoI	GCNNNNNNNGC	5 cut(s)	108, 191, 359, 592, 601
NcoI	CCATGG	1 cut(s)	16
NdeII	GATC	4 cut(s)	166, 197, 404, 462
NheI	GCTAGC	1 cut(s)	98
NlaIII	CATG	5 cut(s)	20, 193, 386, 497, 565
NlaIV	GGNNCC	6 cut(s)	168, 248, 309, 310, 464, 596
OliI	CACNNNNGTG	1 cut(s)	175
PaqCI	CACCTGC	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	302, 376
PkrI	GCNGC	1 cut(s)	364
PleI	GAGTC	4 cut(s)	77, 478, 498, 565
PpsI	GAGTC	4 cut(s)	77, 478, 498, 565
Psp124BI	GAGCTC	1 cut(s)	509
Psp1406I	AACGTT	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	6 cut(s)	168, 248, 309, 310, 464, 596
PspOMI	GGGCCC	1 cut(s)	307
PspPI	GGNCC	4 cut(s)	246, 307, 308, 525
PstNI	CAGNNNCTG	1 cut(s)	274
PsuI	RGATCY	4 cut(s)	166, 197, 404, 462
PvuII	CAGCTG	1 cut(s)	522
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
RseI	CAYNNNNRTG	1 cut(s)	175
SacI	GAGCTC	1 cut(s)	509
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	1 cut(s)	363
Sau3AI	GATC	4 cut(s)	166, 197, 404, 462
Sau96I	GGNCC	4 cut(s)	246, 307, 308, 525
SchI	GAGTC	4 cut(s)	77, 478, 499, 565
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	2 cut(s)	311, 509
SinI	GGWCC	2 cut(s)	246, 525
SmiMI	CAYNNNNRTG	1 cut(s)	175
SsiI	CCGC	4 cut(s)	194, 337, 360, 363
SspMI	CTAG	1 cut(s)	99
SstI	GAGCTC	1 cut(s)	509
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	1 cut(s)	177
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	3 cut(s)	333, 440, 544
TauI	GCSGC	1 cut(s)	365
TfiI	GAWTC	2 cut(s)	302, 376
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	4 cut(s)	182, 429, 538, 605
TspDTI	ATGAA	4 cut(s)	178, 244, 371, 578
TspRI	CASTG	4 cut(s)	182, 429, 538, 605
VpaK11BI	GGWCC	2 cut(s)	246, 525
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.