Prupe.6G201300_v2.0.a1

Catalyzes the third of the four reactions of the long- chain fatty acids elongation cycle. This endoplasmic reticulum- bound enzymatic process, allows the addition of two carbons to the chain of long- and very long-chain fatty acids VLCFAs per cycle. This enzyme catalyzes the dehydration of the 3-hydroxyacyl-CoA intermediate into trans-2,3-enoyl-CoA, within each cycle of fatty acid elongation. Thereby, it participates to the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors of membrane lipids and lipid mediators

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
20918337 .. 20921325
2989 bp
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UTR
Exon/CDS
Intron
Prupe.6G201300.3

Sequence Viewer

Length: 666 bp
ATGGCGGGAGCATTATCCGCTCTCAGGCGCCTGTATCTCTCTCTCTATAACTGGACCGTCTTCCTCGGATGGTTGCAGGTACTGTATCTTGCTCTCAAGACTCTCAACGAATTAGGCCACCAGCATGTTTACAAAGCCGTTGAACGTCCACTTCTTCTTGCTCAATCCGCCGCCGTTTTGGAGATTCTTCATGGTCTAGTAGGTTTGGTCAGATCTCCGATATCAGCGACACTGCCGCAAATTGGTTCAAGATTGTATCTTACTTGGGGAGTCCTCTGGAGTTTTCCTGAGACTCAGAGTCATATACTTGTGAGCTCTTTGGTCATCAGTTGGTCTATCACTGAGATTATTCGATACTCTTTCTTTGGCATGAAGGAGGCACTTGGTTTTGCACCTTCATGGCTCTTGTGGCTCAGGTATAGCACATTTATCTTGTTGTATCCAACTGGCATCACAAGTGAAGTGGGTCTAATTTATATTGCCTTACAATACATTCAGAAGTCTGAAAAGTATTCTGTAAGGATGCCAAACAAGTGGAACTTCTCTTTCGATTACTTCTATGCTGCCATTATCGCTCTAGGAATCTATGTCCCAGGCAGCCCTCACATGTACCGGTATATGCTTAGTCAGAGGAAGAAAGCTCTTTCAAAAACCAAAGCGGCGTAG

Protein Analysis

222

Amino Acids

25.25

Weight (kDa)

9.79

Isoelectric Point (pI)

52.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 67
AccB1I GGYRCC 1 cut(s) 27
AccBSI CCGCTC 1 cut(s) 20
AciI CCGC 6 cut(s) 5, 18, 168, 171, 236, 659
AcyI GRCGYC 1 cut(s) 28
AfaI GTAC 2 cut(s) 81, 611
AfiI CCNNNNNNNGG 2 cut(s) 24, 242
AflIII ACRYGT 1 cut(s) 606
AgeI ACCGGT 1 cut(s) 612
AgsI TTSAA 3 cut(s) 143, 249, 648
AhdI GACNNNNNGTC 1 cut(s) 297
AjnI CCWGG 1 cut(s) 592
AluBI AGCT 2 cut(s) 315, 641
AluI AGCT 2 cut(s) 315, 641
Alw21I GWGCWC 1 cut(s) 317
Alw26I GTCTC 1 cut(s) 284
AlwNI CAGNNNCTG 1 cut(s) 82
AoxI GGCC 1 cut(s) 115
ApeKI GCWGC 2 cut(s) 563, 597
AsiGI ACCGGT 1 cut(s) 612
AspLEI GCGC 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 54
AvaII GGWCC 1 cut(s) 54
BanI GGYRCC 1 cut(s) 27
BanII GRGCYC 1 cut(s) 317
BbsI GAAGAC 1 cut(s) 52
Bbv12I GWGCWC 1 cut(s) 317
BbvI GCAGC 2 cut(s) 550, 609
BccI CCATC 1 cut(s) 63
BceAI ACGGC 2 cut(s) 122, 158
BciT130I CCWGG 1 cut(s) 594
BciVI GTATCC 1 cut(s) 450
BcoDI GTCTC 1 cut(s) 284
BfaI CTAG 2 cut(s) 197, 578
BfoI RGCGCY 1 cut(s) 31
BfuAI ACCTGC 1 cut(s) 67
BfuI GTATCC 1 cut(s) 450
BglII AGATCT 1 cut(s) 212
BisI GCNGC 5 cut(s) 171, 236, 564, 598, 660
BlsI GCNGC 5 cut(s) 172, 237, 565, 599, 661
Bme1390I CCNGG 1 cut(s) 594
Bme18I GGWCC 1 cut(s) 54
BmeRI GACNNNNNGTC 1 cut(s) 297
BmgT120I GGNCC 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 29
BmrFI CCNGG 1 cut(s) 594
BmsI GCATC 2 cut(s) 459, 513
BpiI GAAGAC 1 cut(s) 52
BpmI CTGGAG 1 cut(s) 298
Bpu10I CCTNAGC 1 cut(s) 413
BpuEI CTTGAG 1 cut(s) 80
BsaHI GRCGYC 1 cut(s) 28
BsaJI CCNNGG 2 cut(s) 64, 592
BsaWI WCCGGW 1 cut(s) 612
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 242
Bse118I RCCGGY 1 cut(s) 612
Bse1I ACTGG 2 cut(s) 56, 451
BseBI CCWGG 1 cut(s) 594
BseDI CCNNGG 2 cut(s) 64, 592
BseGI GGATG 2 cut(s) 74, 528
BseLI CCNNNNNNNGG 2 cut(s) 24, 242
BseMII CTCAG 5 cut(s) 37, 279, 308, 333, 427
BseNI ACTGG 2 cut(s) 56, 451
BseXI GCAGC 2 cut(s) 550, 609
BshFI GGCC 1 cut(s) 117
BshNI GGYRCC 1 cut(s) 27
BshTI ACCGGT 1 cut(s) 612
BsiHKAI GWGCWC 1 cut(s) 317
BsiSI CCGG 1 cut(s) 613
BslFI GGGAC 1 cut(s) 575
BslI CCNNNNNNNGG 2 cut(s) 24, 242
BsmAI GTCTC 1 cut(s) 284
BsmFI GGGAC 1 cut(s) 575
BsnI GGCC 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 317
Bsp143I GATC 1 cut(s) 212
BspACI CCGC 6 cut(s) 5, 18, 168, 171, 236, 659
BspANI GGCC 1 cut(s) 117
BspCNI CTCAG 5 cut(s) 36, 280, 307, 334, 426
BspLI GGNNCC 1 cut(s) 29
BspMI ACCTGC 1 cut(s) 67
BspT107I GGYRCC 1 cut(s) 27
BsrBI CCGCTC 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 612
BsrI ACTGG 2 cut(s) 56, 451
BssAI RCCGGY 1 cut(s) 612
BssECI CCNNGG 2 cut(s) 64, 592
BssMI GATC 1 cut(s) 212
BssNI GRCGYC 1 cut(s) 28
Bst2UI CCWGG 1 cut(s) 594
Bst4CI ACNGT 2 cut(s) 58, 84
BstACI GRCGYC 1 cut(s) 28
BstDEI CTNAG 6 cut(s) 23, 288, 294, 342, 413, 623
BstF5I GGATG 2 cut(s) 74, 528
BstH2I RGCGCY 1 cut(s) 31
BstHHI GCGC 1 cut(s) 30
BstKTI GATC 1 cut(s) 215
BstMAI GTCTC 1 cut(s) 284
BstMBI GATC 1 cut(s) 212
BstMWI GCNNNNNNNGC 4 cut(s) 17, 167, 409, 572
BstNI CCWGG 1 cut(s) 594
BstNSI RCATGY 2 cut(s) 128, 610
BstSCI CCNGG 1 cut(s) 592
BstV1I GCAGC 2 cut(s) 550, 609
BstV2I GAAGAC 1 cut(s) 52
BstX2I RGATCY 1 cut(s) 212
BstXI CCANNNNNNTGG 1 cut(s) 534
BstYI RGATCY 1 cut(s) 212
BsuI GTATCC 1 cut(s) 450
BsuRI GGCC 1 cut(s) 117
BtsCI GGATG 2 cut(s) 74, 528
BtsI GCAGTG 1 cut(s) 230
BtsIMutI CAGTG 2 cut(s) 230, 339
BveI ACCTGC 1 cut(s) 67
CaiI CAGNNNCTG 1 cut(s) 82
CfoI GCGC 1 cut(s) 30
Cfr10I RCCGGY 1 cut(s) 612
Cfr13I GGNCC 1 cut(s) 54
Csp6I GTAC 2 cut(s) 80, 610
CspAI ACCGGT 1 cut(s) 612
CspCI CAANNNNNGTGG 2 cut(s) 444, 479
CviAII CATG 5 cut(s) 125, 191, 370, 399, 607
CviJI RGCY 7 cut(s) 117, 137, 315, 403, 412, 600, 641
CviKI_1 RGCY 7 cut(s) 117, 137, 315, 403, 412, 600, 641
CviQI GTAC 2 cut(s) 80, 610
DdeI CTNAG 6 cut(s) 23, 288, 294, 342, 413, 623
DinI GGCGCC 1 cut(s) 29
DpnI GATC 1 cut(s) 214
DpnII GATC 1 cut(s) 212
DriI GACNNNNNGTC 1 cut(s) 297
Eam1105I GACNNNNNGTC 1 cut(s) 297
EciI GGCGGA 1 cut(s) 157
Ecl136II GAGCTC 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 317
Eco32I GATATC 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 54
Eco53kI GAGCTC 1 cut(s) 315
EcoICRI GAGCTC 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 592
EcoRV GATATC 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 317
EgeI GGCGCC 1 cut(s) 29
EheI GGCGCC 1 cut(s) 29
FaeI CATG 5 cut(s) 128, 194, 373, 402, 610
FalI AAGNNNNNCTT 2 cut(s) 524, 556
FaqI GGGAC 1 cut(s) 575
FatI CATG 5 cut(s) 124, 190, 369, 398, 606
Fnu4HI GCNGC 5 cut(s) 171, 236, 564, 598, 660
FokI GGATG 2 cut(s) 81, 535
FriOI GRGCYC 1 cut(s) 317
Fsp4HI GCNGC 5 cut(s) 171, 236, 564, 598, 660
FspBI CTAG 2 cut(s) 197, 578
GlaI GCGC 1 cut(s) 29
GluI GCNGC 5 cut(s) 171, 236, 564, 598, 660
GsuI CTGGAG 1 cut(s) 298
HaeII RGCGCY 1 cut(s) 31
HaeIII GGCC 1 cut(s) 117
HapII CCGG 1 cut(s) 613
HhaI GCGC 1 cut(s) 30
Hin1I GRCGYC 1 cut(s) 28
Hin1II CATG 5 cut(s) 128, 194, 373, 402, 610
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HinfI GANTC 6 cut(s) 100, 184, 270, 292, 298, 582
HpaII CCGG 1 cut(s) 613
Hpy166II GTNNAC 2 cut(s) 130, 149
Hpy188I TCNGA 7 cut(s) 68, 212, 219, 297, 498, 505, 630
Hpy188III TCNNGA 4 cut(s) 97, 249, 277, 287
Hpy8I GTNNAC 2 cut(s) 130, 149
HpyAV CCTTC 2 cut(s) 367, 405
HpyCH4III ACNGT 2 cut(s) 58, 84
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 2 cut(s) 76, 392
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 167, 409, 572
HpyF3I CTNAG 6 cut(s) 23, 288, 294, 342, 413, 623
HpySE526I ACGT 1 cut(s) 145
Hsp92I GRCGYC 1 cut(s) 28
Hsp92II CATG 5 cut(s) 128, 194, 373, 402, 610
HspAI GCGC 1 cut(s) 28
KasI GGCGCC 1 cut(s) 27
Kzo9I GATC 1 cut(s) 212
LmnI GCTCC 1 cut(s) 8
Lsp1109I GCAGC 2 cut(s) 550, 609
LweI GCATC 2 cut(s) 459, 513
MaeI CTAG 2 cut(s) 197, 578
MaeII ACGT 1 cut(s) 145
MalI GATC 1 cut(s) 214
MbiI CCGCTC 1 cut(s) 20
MboI GATC 1 cut(s) 212
MboII GAAGA 4 cut(s) 52, 146, 179, 646
MflI RGATCY 1 cut(s) 212
MhlI GDGCHC 1 cut(s) 317
MluCI AATT 3 cut(s) 110, 240, 471
Mly113I GGCGCC 1 cut(s) 28
MlyI GAGTC 4 cut(s) 94, 279, 286, 307
MmeI TCCRAC 1 cut(s) 467
MnlI CCTC 5 cut(s) 74, 284, 370, 612, 624
MslI CAYNNNNRTG 2 cut(s) 123, 397
MspI CCGG 1 cut(s) 613
MspR9I CCNGG 1 cut(s) 594
MvaI CCWGG 1 cut(s) 594
MwoI GCNNNNNNNGC 4 cut(s) 17, 167, 409, 572
NarI GGCGCC 1 cut(s) 28
NdeII GATC 1 cut(s) 212
NlaIII CATG 5 cut(s) 128, 194, 373, 402, 610
NlaIV GGNNCC 1 cut(s) 29
NspI RCATGY 2 cut(s) 128, 610
PciI ACATGT 1 cut(s) 606
PfeI GAWTC 2 cut(s) 184, 582
PinAI ACCGGT 1 cut(s) 612
PkrI GCNGC 5 cut(s) 172, 237, 565, 599, 661
PleI GAGTC 4 cut(s) 94, 278, 286, 306
PluTI GGCGCC 1 cut(s) 31
PpsI GAGTC 4 cut(s) 94, 278, 286, 306
PscI ACATGT 1 cut(s) 606
Psp124BI GAGCTC 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 592
PspGI CCWGG 1 cut(s) 592
PspN4I GGNNCC 1 cut(s) 29
PspPI GGNCC 1 cut(s) 54
PstNI CAGNNNCTG 1 cut(s) 82
PsuI RGATCY 1 cut(s) 212
RsaI GTAC 2 cut(s) 81, 611
RsaNI GTAC 2 cut(s) 80, 610
RseI CAYNNNNRTG 2 cut(s) 123, 397
SacI GAGCTC 1 cut(s) 317
SatI GCNGC 5 cut(s) 171, 236, 564, 598, 660
Sau3AI GATC 1 cut(s) 212
Sau96I GGNCC 1 cut(s) 54
SchI GAGTC 4 cut(s) 94, 279, 286, 307
ScrFI CCNGG 1 cut(s) 594
SduI GDGCHC 1 cut(s) 317
SetI ASST 7 cut(s) 81, 148, 205, 317, 397, 419, 643
SfaNI GCATC 2 cut(s) 459, 513
SfoI GGCGCC 1 cut(s) 29
SinI GGWCC 1 cut(s) 54
SmiMI CAYNNNNRTG 2 cut(s) 123, 397
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 3 cut(s) 110, 240, 471
SsiI CCGC 6 cut(s) 5, 18, 168, 171, 236, 659
SspDI GGCGCC 1 cut(s) 27
SspMI CTAG 2 cut(s) 197, 578
SstI GAGCTC 1 cut(s) 317
StyD4I CCNGG 1 cut(s) 592
TaaI ACNGT 2 cut(s) 58, 84
TaiI ACGT 1 cut(s) 148
TaqI TCGA 2 cut(s) 352, 549
TasI AATT 3 cut(s) 110, 240, 471
TauI GCSGC 3 cut(s) 173, 238, 662
TfiI GAWTC 2 cut(s) 184, 582
TscAI CASTG 2 cut(s) 237, 346
TseI GCWGC 2 cut(s) 563, 597
TspDTI ATGAA 3 cut(s) 179, 386, 387
TspRI CASTG 2 cut(s) 237, 346
VpaK11BI GGWCC 1 cut(s) 54
XceI RCATGY 2 cut(s) 128, 610
XspI CTAG 2 cut(s) 197, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.