Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006547

Physical Location & Seq

Genomic Coordinates Reverse (-)

7181648 .. 7182190

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g06670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGCGGTACCGTTATCCGCTCTCAGGCGCCTATACCTTTCCCTCTACAACTGGACTGTCTTCCTCGGATGGTTTCAGGTACTGTATCTTGCTCTCAAGACTCTCAATGAATCCGGCCACCAACATGTCTACAGTGCCGTCGAACGCCCTCTGCTTCTCGCCCAATCCGCTGCCGTTTTGGAGATTCTTCATGGGCTAGTGGGTTTGGTGAGATCGATCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018812 GO:0019752 GO:0030148 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032787 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046467 GO:0071704 GO:0072330 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00062 ko01040 ko01110 ko01212 map00062 map01040 map01110 map01212

Pfam Domains

Protein Families

PTPLA

Protein Analysis

75

Amino Acids

8.35

Weight (kDa)

9.4

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10480 AT5G10480 AT5G10480
fragaria_vesca	FvH4_1g19690 FvH4_1g19690
malus_domestica	MD01G1038800.v1.1 MD04G1039300.v1.1 MD15G1312800.v1.1 MD15G1313000.v1.1
prunus_persica	Prupe.6G201300_v2.0.a1 Prupe.6G201300_v2.0.a1 Prupe.6G201300_v2.0.a1
pyrus_communis	pycom01g06670
rosa_chinensis	RchiOBHm_Chr2g0111251
rosa_laevigata	RLG00000017879
rosa_multiflora	Rmu_co8061266.1_g000001 Rmu_sc0001721.1_g000014 Rmu_sc0003055.1_g000014
rosa_roxburghii	Rroxscaffold_2G00132570
rosa_rugosa	Rorug02G0172000 Rorug02G0172100
rosa_samantha	Rh2AG225200 Rh2BG237000 Rh2CG228000 Rh2DG232600
rosa_wichuraiana	Rw2G017380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	7
AccB1I	GGYRCC	2 cut(s)	7, 27
AccBSI	CCGCTC	1 cut(s)	20
AccI	GTMKAC	1 cut(s)	129
AciI	CCGC	3 cut(s)	5, 18, 168
AclWI	GGATC	1 cut(s)	211
AcoI	YGGCCR	1 cut(s)	115
AcyI	GRCGYC	1 cut(s)	28
AfaI	GTAC	2 cut(s)	9, 81
AfiI	CCNNNNNNNGG	1 cut(s)	24
AflIII	ACRYGT	1 cut(s)	124
AlwI	GGATC	1 cut(s)	211
AlwNI	CAGNNNCTG	1 cut(s)	82
AoxI	GGCC	1 cut(s)	115
ApeKI	GCWGC	1 cut(s)	170
Asp718I	GGTACC	1 cut(s)	7
AspLEI	GCGC	1 cut(s)	30
AsuHPI	GGTGA	1 cut(s)	220
BanI	GGYRCC	2 cut(s)	7, 27
BbsI	GAAGAC	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	1 cut(s)	63
BceAI	ACGGC	2 cut(s)	122, 158
BfaI	CTAG	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	130
BfoI	RGCGCY	1 cut(s)	31
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
BmiI	GGNNCC	2 cut(s)	9, 29
BpiI	GAAGAC	1 cut(s)	52
BpuEI	CTTGAG	1 cut(s)	80
Bsa29I	ATCGAT	1 cut(s)	215
BsaHI	GRCGYC	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse1I	ACTGG	1 cut(s)	56
BseCI	ATCGAT	1 cut(s)	215
BseDI	CCNNGG	1 cut(s)	64
BseGI	GGATG	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMII	CTCAG	1 cut(s)	37
BseNI	ACTGG	1 cut(s)	56
BseXI	GCAGC	1 cut(s)	157
BshFI	GGCC	1 cut(s)	117
BshNI	GGYRCC	2 cut(s)	7, 27
BshVI	ATCGAT	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	114
BslI	CCNNNNNNNGG	1 cut(s)	24
BsnI	GGCC	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	212, 216
BspACI	CCGC	3 cut(s)	5, 18, 168
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	1 cut(s)	36
BspDI	ATCGAT	1 cut(s)	215
BspLI	GGNNCC	2 cut(s)	9, 29
BspPI	GGATC	1 cut(s)	211
BspT107I	GGYRCC	2 cut(s)	7, 27
BsrBI	CCGCTC	1 cut(s)	20
BsrI	ACTGG	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	2 cut(s)	212, 216
BssNI	GRCGYC	1 cut(s)	28
Bst4CI	ACNGT	4 cut(s)	12, 58, 84, 134
BstACI	GRCGYC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	23
BstF5I	GGATG	1 cut(s)	74
BstH2I	RGCGCY	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	2 cut(s)	215, 219
BstMBI	GATC	2 cut(s)	212, 216
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNSI	RCATGY	1 cut(s)	128
BstSFI	CTRYAG	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	1 cut(s)	52
Bsu15I	ATCGAT	1 cut(s)	215
BsuRI	GGCC	1 cut(s)	117
BsuTUI	ATCGAT	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	74
BtsIMutI	CAGTG	1 cut(s)	139
CaiI	CAGNNNCTG	1 cut(s)	82
CfoI	GCGC	1 cut(s)	30
ClaI	ATCGAT	1 cut(s)	215
Csp6I	GTAC	2 cut(s)	8, 80
CviAII	CATG	2 cut(s)	125, 191
CviJI	RGCY	2 cut(s)	117, 196
CviKI_1	RGCY	2 cut(s)	117, 196
CviQI	GTAC	2 cut(s)	8, 80
DdeI	CTNAG	1 cut(s)	23
DinI	GGCGCC	1 cut(s)	29
DpnI	GATC	2 cut(s)	214, 218
DpnII	GATC	2 cut(s)	212, 216
EaeI	YGGCCR	1 cut(s)	115
EgeI	GGCGCC	1 cut(s)	29
EheI	GGCGCC	1 cut(s)	29
FaeI	CATG	2 cut(s)	128, 194
FaiI	YATR	3 cut(s)	34, 126, 192
FatI	CATG	2 cut(s)	124, 190
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	1 cut(s)	197
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	1 cut(s)	171
HaeII	RGCGCY	1 cut(s)	31
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	1 cut(s)	114
HhaI	GCGC	1 cut(s)	30
Hin1I	GRCGYC	1 cut(s)	28
Hin1II	CATG	2 cut(s)	128, 194
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HinfI	GANTC	3 cut(s)	100, 110, 184
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	1 cut(s)	68
Hpy188III	TCNNGA	1 cut(s)	97
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	143
HpyCH4III	ACNGT	4 cut(s)	12, 58, 84, 134
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	1 cut(s)	23
Hsp92I	GRCGYC	1 cut(s)	28
Hsp92II	CATG	2 cut(s)	128, 194
HspAI	GCGC	1 cut(s)	28
KasI	GGCGCC	1 cut(s)	27
KpnI	GGTACC	1 cut(s)	11
Kzo9I	GATC	2 cut(s)	212, 216
LpnPI	CCDG	4 cut(s)	10, 37, 62, 127
Lsp1109I	GCAGC	1 cut(s)	157
MaeI	CTAG	1 cut(s)	197
MalI	GATC	2 cut(s)	214, 218
MbiI	CCGCTC	1 cut(s)	20
MboI	GATC	2 cut(s)	212, 216
MboII	GAAGA	2 cut(s)	52, 179
Mly113I	GGCGCC	1 cut(s)	28
MlyI	GAGTC	1 cut(s)	94
MnlI	CCTC	3 cut(s)	53, 74, 159
MslI	CAYNNNNRTG	1 cut(s)	123
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	167
NarI	GGCGCC	1 cut(s)	28
NdeII	GATC	2 cut(s)	212, 216
NlaIII	CATG	2 cut(s)	128, 194
NlaIV	GGNNCC	2 cut(s)	9, 29
NspI	RCATGY	1 cut(s)	128
PciI	ACATGT	1 cut(s)	124
PfeI	GAWTC	2 cut(s)	110, 184
PkrI	GCNGC	1 cut(s)	172
PleI	GAGTC	1 cut(s)	94
PluTI	GGCGCC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	94
PscI	ACATGT	1 cut(s)	124
PspN4I	GGNNCC	2 cut(s)	9, 29
PstNI	CAGNNNCTG	1 cut(s)	82
RsaI	GTAC	2 cut(s)	9, 81
RsaNI	GTAC	2 cut(s)	8, 80
RseI	CAYNNNNRTG	1 cut(s)	123
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	2 cut(s)	212, 216
SchI	GAGTC	1 cut(s)	94
SetI	ASST	2 cut(s)	39, 81
SfcI	CTRYAG	1 cut(s)	130
SfoI	GGCGCC	1 cut(s)	29
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SsiI	CCGC	3 cut(s)	5, 18, 168
SspDI	GGCGCC	1 cut(s)	27
SspMI	CTAG	1 cut(s)	197
TaaI	ACNGT	4 cut(s)	12, 58, 84, 134
TaqI	TCGA	2 cut(s)	141, 215
TfiI	GAWTC	2 cut(s)	110, 184
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	1 cut(s)	170
TspDTI	ATGAA	2 cut(s)	123, 179
TspRI	CASTG	1 cut(s)	139
XceI	RCATGY	1 cut(s)	128
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.