Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006547

Physical Location & Seq

Genomic Coordinates Forward (+)

22554737 .. 22557361

Gene Structure 2625 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017879

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCGGGATCTTTGTCTCTTCTTCTCAGACGGCTTTACCTTTCCCTCTACAACTGGACCCTCTTCATCGGATGGTCTCAGGTGCTGTATCTTGCTGTGAAGACACTTCGGGAATCGGGCCCCGAGCAGGTTTACAATGCCCTCGACCGCCCACTTCAGTTTGCTCAATCCGCCGCGTTTTTGGAGATTCTTCATGGCTTAGTGGGTTTGGTGAGATCTCCTATAACAGCCACACTGCCACAGATTAGTTCGAGGTTGTTTCTGGTTTGGGGGATCCTGTGGAGCTTTCCTGAGACTCAGAGTCATGTCCTTGTGAGCTCTTTGGTTATCAGCTGGTCCATCACTGAGATTATTCGATACTCTTTCTATGGCATGAAAGAGACTCTTGGTTTTGCGCCTTCCTGGCTCCAGTGGCTCAGGTATAGCACCTTCATGTTGTTGTATCCAATTGGGATCACAAGTGAAGTTGGCTTAATATATCTTGCCATGCCACACATTAAGAATTCTGAGAAGTATTGTATAAGGATGCCAAACAAGTGGAACTTCTCATTTGATTACATCTGTGCTGCGATTGTAGCCCTAGGATTCTATGTCCCAGGCATTCCTCACATGTACCGGTATATGCTTACTCAGAGGAAGAAAGTTCTTTCAAAATCTAAAGCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018812 GO:0019752 GO:0030148 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032787 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046467 GO:0071704 GO:0072330 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00062 ko01040 ko01110 ko01212 map00062 map01040 map01110 map01212

Pfam Domains

Protein Families

PTPLA

Protein Analysis

223

Amino Acids

25.58

Weight (kDa)

9.58

Isoelectric Point (pI)

52.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTPLA	PF04387	56 - 218	5.8e-60	Protein tyrosine phosphatase-like protein, PTPLA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10480 AT5G10480 AT5G10480
fragaria_vesca	FvH4_1g19690 FvH4_1g19690
malus_domestica	MD01G1038800.v1.1 MD04G1039300.v1.1 MD15G1312800.v1.1 MD15G1313000.v1.1
prunus_persica	Prupe.6G201300_v2.0.a1 Prupe.6G201300_v2.0.a1 Prupe.6G201300_v2.0.a1
pyrus_communis	pycom01g06670
rosa_chinensis	RchiOBHm_Chr2g0111251
rosa_laevigata	RLG00000017879
rosa_multiflora	Rmu_co8061266.1_g000001 Rmu_sc0001721.1_g000014 Rmu_sc0003055.1_g000014
rosa_roxburghii	Rroxscaffold_2G00132570
rosa_rugosa	Rorug02G0172000 Rorug02G0172100
rosa_samantha	Rh2AG225200 Rh2BG237000 Rh2CG228000 Rh2DG232600
rosa_wichuraiana	Rw2G017380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	118
AccII	CGCG	1 cut(s)	176
AciI	CCGC	4 cut(s)	5, 148, 171, 174
AclWI	GGATC	4 cut(s)	16, 268, 281, 461
AcsI	RAATTY	1 cut(s)	502
AcuI	CTGAAG	1 cut(s)	140
AfaI	GTAC	1 cut(s)	614
AfiI	CCNNNNNNNGG	1 cut(s)	127
AflIII	ACRYGT	1 cut(s)	609
AgeI	ACCGGT	1 cut(s)	615
AgsI	TTSAA	1 cut(s)	651
AhdI	GACNNNNNGTC	1 cut(s)	300
AjnI	CCWGG	2 cut(s)	401, 595
AluBI	AGCT	3 cut(s)	285, 318, 333
AluI	AGCT	3 cut(s)	285, 318, 333
Alw21I	GWGCWC	1 cut(s)	320
Alw26I	GTCTC	4 cut(s)	21, 81, 287, 374
AlwI	GGATC	4 cut(s)	16, 268, 281, 461
AlwNI	CAGNNNCTG	1 cut(s)	85
Ama87I	CYCGRG	1 cut(s)	122
AoxI	GGCC	1 cut(s)	118
ApaI	GGGCCC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	566
ApoI	RAATTY	1 cut(s)	502
AsiGI	ACCGGT	1 cut(s)	615
AspA2I	CCTAGG	1 cut(s)	580
AspLEI	GCGC	1 cut(s)	397
AspS9I	GGNCC	4 cut(s)	57, 118, 119, 336
AsuHPI	GGTGA	1 cut(s)	223
AvaI	CYCGRG	1 cut(s)	122
AvaII	GGWCC	2 cut(s)	57, 336
AvrII	CCTAGG	1 cut(s)	580
BaeGI	GKGCMC	1 cut(s)	122
BamHI	GGATCC	1 cut(s)	273
BanII	GRGCYC	2 cut(s)	122, 320
BarI	GAAGNNNNNNTAC	2 cut(s)	413, 445
BbsI	GAAGAC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	320
BbvI	GCAGC	1 cut(s)	553
BccI	CCATC	2 cut(s)	66, 347
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	2 cut(s)	403, 597
BciVI	GTATCC	1 cut(s)	453
BcoDI	GTCTC	4 cut(s)	21, 81, 287, 374
BfaI	CTAG	1 cut(s)	581
BfuAI	ACCTGC	1 cut(s)	118
BfuI	GTATCC	1 cut(s)	453
BglI	GCCNNNNNGGC	1 cut(s)	403
BglII	AGATCT	1 cut(s)	215
BisI	GCNGC	2 cut(s)	174, 567
BlnI	CCTAGG	1 cut(s)	580
BlsI	GCNGC	2 cut(s)	175, 568
Bme1390I	CCNGG	2 cut(s)	403, 597
Bme18I	GGWCC	2 cut(s)	57, 336
BmeRI	GACNNNNNGTC	1 cut(s)	300
BmeT110I	CYCGRG	1 cut(s)	122
BmgT120I	GGNCC	4 cut(s)	57, 118, 119, 336
BmiI	GGNNCC	5 cut(s)	59, 120, 121, 275, 407
BmrFI	CCNGG	2 cut(s)	403, 597
BmsI	GCATC	1 cut(s)	516
BpiI	GAAGAC	1 cut(s)	107
BpmI	CTGGAG	1 cut(s)	392
Bpu10I	CCTNAGC	1 cut(s)	416
BsaI	GGTCTC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	580, 595
BsaWI	WCCGGW	1 cut(s)	615
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse118I	RCCGGY	1 cut(s)	615
Bse1I	ACTGG	2 cut(s)	59, 409
BseBI	CCWGG	2 cut(s)	403, 597
BseDI	CCNNGG	2 cut(s)	580, 595
BseGI	GGATG	2 cut(s)	77, 531
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	8 cut(s)	40, 92, 282, 311, 336, 430, 498, 644
BseNI	ACTGG	2 cut(s)	59, 409
BseSI	GKGCMC	1 cut(s)	122
BseXI	GCAGC	1 cut(s)	553
Bsh1236I	CGCG	1 cut(s)	176
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	1 cut(s)	120
BshTI	ACCGGT	1 cut(s)	615
BsiEI	CGRYCG	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	320
BsiHKCI	CYCGRG	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	616
BslFI	GGGAC	1 cut(s)	578
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	4 cut(s)	21, 81, 287, 374
BsmFI	GGGAC	1 cut(s)	578
BsmI	GAATGC	1 cut(s)	600
BsnI	GGCC	1 cut(s)	120
Bso31I	GGTCTC	1 cut(s)	81
BsoBI	CYCGRG	1 cut(s)	122
Bsp120I	GGGCCC	1 cut(s)	118
Bsp1286I	GDGCHC	2 cut(s)	122, 320
Bsp143I	GATC	4 cut(s)	8, 215, 273, 453
BspACI	CCGC	4 cut(s)	5, 148, 171, 174
BspANI	GGCC	1 cut(s)	120
BspCNI	CTCAG	8 cut(s)	39, 91, 283, 310, 337, 429, 499, 643
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	5 cut(s)	59, 120, 121, 275, 407
BspMI	ACCTGC	1 cut(s)	118
BspPI	GGATC	4 cut(s)	16, 268, 281, 461
BspTNI	GGTCTC	1 cut(s)	81
BsrFI	RCCGGY	1 cut(s)	615
BsrI	ACTGG	2 cut(s)	59, 409
BssAI	RCCGGY	1 cut(s)	615
BssECI	CCNNGG	2 cut(s)	580, 595
BssMI	GATC	4 cut(s)	8, 215, 273, 453
BssT1I	CCWWGG	1 cut(s)	580
Bst2UI	CCWGG	2 cut(s)	403, 597
Bst6I	CTCTTC	2 cut(s)	24, 68
BstDEI	CTNAG	9 cut(s)	26, 78, 199, 291, 297, 345, 416, 507, 630
BstF5I	GGATG	2 cut(s)	77, 531
BstFNI	CGCG	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	397
BstKTI	GATC	4 cut(s)	11, 218, 276, 456
BstMAI	GTCTC	4 cut(s)	21, 81, 287, 374
BstMBI	GATC	4 cut(s)	8, 215, 273, 453
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 403, 412, 575
BstNI	CCWGG	2 cut(s)	403, 597
BstNSI	RCATGY	1 cut(s)	613
BstSCI	CCNGG	2 cut(s)	401, 595
BstSLI	GKGCMC	1 cut(s)	122
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	553
BstV2I	GAAGAC	1 cut(s)	107
BstX2I	RGATCY	3 cut(s)	8, 215, 273
BstXI	CCANNNNNNTGG	1 cut(s)	537
BstYI	RGATCY	3 cut(s)	8, 215, 273
BsuI	GTATCC	1 cut(s)	453
BsuRI	GGCC	1 cut(s)	120
BtsCI	GGATG	2 cut(s)	77, 531
BtsI	GCAGTG	1 cut(s)	233
BtsIMutI	CAGTG	3 cut(s)	233, 342, 416
BveI	ACCTGC	1 cut(s)	118
CaiI	CAGNNNCTG	1 cut(s)	85
CfoI	GCGC	1 cut(s)	397
Cfr10I	RCCGGY	1 cut(s)	615
Cfr13I	GGNCC	4 cut(s)	57, 118, 119, 336
Csp6I	GTAC	1 cut(s)	613
CspAI	ACCGGT	1 cut(s)	615
CviAII	CATG	6 cut(s)	194, 305, 373, 433, 487, 610
CviQI	GTAC	1 cut(s)	613
DdeI	CTNAG	9 cut(s)	26, 78, 199, 291, 297, 345, 416, 507, 630
DpnI	GATC	4 cut(s)	10, 217, 275, 455
DpnII	GATC	4 cut(s)	8, 215, 273, 453
DriI	GACNNNNNGTC	1 cut(s)	300
Eam1104I	CTCTTC	2 cut(s)	24, 68
Eam1105I	GACNNNNNGTC	1 cut(s)	300
EarI	CTCTTC	2 cut(s)	24, 68
EciI	GGCGGA	1 cut(s)	160
Ecl136II	GAGCTC	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	580
Eco24I	GRGCYC	2 cut(s)	122, 320
Eco31I	GGTCTC	1 cut(s)	81
Eco47I	GGWCC	2 cut(s)	57, 336
Eco53kI	GAGCTC	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	122
EcoICRI	GAGCTC	1 cut(s)	318
EcoO109I	RGGNCCY	1 cut(s)	119
EcoRI	GAATTC	1 cut(s)	502
EcoRII	CCWGG	2 cut(s)	401, 595
EcoT14I	CCWWGG	1 cut(s)	580
EcoT38I	GRGCYC	2 cut(s)	122, 320
ErhI	CCWWGG	1 cut(s)	580
FaeI	CATG	6 cut(s)	197, 308, 376, 436, 490, 613
FalI	AAGNNNNNCTT	4 cut(s)	369, 401, 527, 559
FaqI	GGGAC	1 cut(s)	578
FatI	CATG	6 cut(s)	193, 304, 372, 432, 486, 609
Fnu4HI	GCNGC	2 cut(s)	174, 567
FokI	GGATG	2 cut(s)	84, 538
FriOI	GRGCYC	2 cut(s)	122, 320
Fsp4HI	GCNGC	2 cut(s)	174, 567
FspBI	CTAG	1 cut(s)	581
GlaI	GCGC	1 cut(s)	396
GluI	GCNGC	2 cut(s)	174, 567
GsuI	CTGGAG	1 cut(s)	392
HaeIII	GGCC	1 cut(s)	120
HapII	CCGG	1 cut(s)	616
HhaI	GCGC	1 cut(s)	397
Hin1II	CATG	6 cut(s)	197, 308, 376, 436, 490, 613
Hin6I	GCGC	1 cut(s)	395
HinP1I	GCGC	1 cut(s)	395
HinfI	GANTC	6 cut(s)	113, 187, 295, 301, 382, 585
HpaII	CCGG	1 cut(s)	616
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	5 cut(s)	29, 71, 300, 508, 633
Hpy188III	TCNNGA	2 cut(s)	110, 290
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	2 cut(s)	408, 439
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 403, 412, 575
HpyF3I	CTNAG	9 cut(s)	26, 78, 199, 291, 297, 345, 416, 507, 630
Hsp92II	CATG	6 cut(s)	197, 308, 376, 436, 490, 613
HspAI	GCGC	1 cut(s)	395
Kzo9I	GATC	4 cut(s)	8, 215, 273, 453
LmnI	GCTCC	2 cut(s)	282, 411
Lsp1109I	GCAGC	1 cut(s)	553
LweI	GCATC	1 cut(s)	516
MaeI	CTAG	1 cut(s)	581
MalI	GATC	4 cut(s)	10, 217, 275, 455
MboI	GATC	4 cut(s)	8, 215, 273, 453
MboII	GAAGA	6 cut(s)	11, 14, 55, 112, 182, 649
MfeI	CAATTG	1 cut(s)	447
MflI	RGATCY	3 cut(s)	8, 215, 273
MhlI	GDGCHC	2 cut(s)	122, 320
MluCI	AATT	2 cut(s)	447, 502
MlyI	GAGTC	3 cut(s)	289, 310, 376
MnlI	CCTC	6 cut(s)	56, 71, 152, 246, 615, 627
MseI	TTAA	2 cut(s)	473, 498
MslI	CAYNNNNRTG	1 cut(s)	431
MspA1I	CMGCKG	1 cut(s)	333
MspI	CCGG	1 cut(s)	616
MspR9I	CCNGG	2 cut(s)	403, 597
MunI	CAATTG	1 cut(s)	447
Mva1269I	GAATGC	1 cut(s)	600
MvaI	CCWGG	2 cut(s)	403, 597
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	4 cut(s)	170, 403, 412, 575
NdeII	GATC	4 cut(s)	8, 215, 273, 453
NlaIII	CATG	6 cut(s)	197, 308, 376, 436, 490, 613
NlaIV	GGNNCC	5 cut(s)	59, 120, 121, 275, 407
NspI	RCATGY	1 cut(s)	613
PciI	ACATGT	1 cut(s)	609
PctI	GAATGC	1 cut(s)	600
PfeI	GAWTC	3 cut(s)	113, 187, 585
PinAI	ACCGGT	1 cut(s)	615
PkrI	GCNGC	2 cut(s)	175, 568
PleI	GAGTC	3 cut(s)	289, 309, 376
PpsI	GAGTC	3 cut(s)	289, 309, 376
PscI	ACATGT	1 cut(s)	609
Psp124BI	GAGCTC	1 cut(s)	320
Psp6I	CCWGG	2 cut(s)	401, 595
PspGI	CCWGG	2 cut(s)	401, 595
PspN4I	GGNNCC	5 cut(s)	59, 120, 121, 275, 407
PspOMI	GGGCCC	1 cut(s)	118
PspPI	GGNCC	4 cut(s)	57, 118, 119, 336
PstNI	CAGNNNCTG	1 cut(s)	85
PsuI	RGATCY	3 cut(s)	8, 215, 273
PvuII	CAGCTG	1 cut(s)	333
RsaI	GTAC	1 cut(s)	614
RsaNI	GTAC	1 cut(s)	613
RseI	CAYNNNNRTG	1 cut(s)	431
SacI	GAGCTC	1 cut(s)	320
SaqAI	TTAA	2 cut(s)	473, 498
SatI	GCNGC	2 cut(s)	174, 567
Sau3AI	GATC	4 cut(s)	8, 215, 273, 453
Sau96I	GGNCC	4 cut(s)	57, 118, 119, 336
SchI	GAGTC	3 cut(s)	289, 310, 376
ScrFI	CCNGG	2 cut(s)	403, 597
SduI	GDGCHC	2 cut(s)	122, 320
SetI	ASST	9 cut(s)	42, 84, 132, 257, 287, 320, 335, 422, 431
SfaNI	GCATC	1 cut(s)	516
SinI	GGWCC	2 cut(s)	57, 336
SmiMI	CAYNNNNRTG	1 cut(s)	431
Sse9I	AATT	2 cut(s)	447, 502
SsiI	CCGC	4 cut(s)	5, 148, 171, 174
SspMI	CTAG	1 cut(s)	581
SstI	GAGCTC	1 cut(s)	320
StyD4I	CCNGG	2 cut(s)	401, 595
StyI	CCWWGG	1 cut(s)	580
TaqI	TCGA	3 cut(s)	144, 251, 355
TasI	AATT	2 cut(s)	447, 502
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	3 cut(s)	113, 187, 585
Tru1I	TTAA	2 cut(s)	473, 498
Tru9I	TTAA	2 cut(s)	473, 498
TscAI	CASTG	3 cut(s)	240, 349, 416
TseI	GCWGC	1 cut(s)	566
TspDTI	ATGAA	4 cut(s)	55, 182, 389, 421
TspRI	CASTG	3 cut(s)	240, 349, 416
VpaK11BI	GGWCC	2 cut(s)	57, 336
XapI	RAATTY	1 cut(s)	502
XceI	RCATGY	1 cut(s)	613
XmaJI	CCTAGG	1 cut(s)	580
XspI	CTAG	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.