Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006547

Physical Location & Seq

Genomic Coordinates Reverse (-)

69590639 .. 69593382

Gene Structure 2744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00132570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCGGGATCTTTGTCTCTTCTTCTCAGACGGCTTTACCTTTCCCTCTACAACTGGACCCTCTTCATCGGATGGTCTCAGGTGCTGTATCTTGCTGTGAAGACACTTCGGGAATCGGGCCCCGAGCAGGTTTACAATGCCCTCGACCGCCCACTTCAGTTTGCTCAATCCGCCGCGTTTTTGGAGATTCTTCATGGCTTAGTGGGTTTGGTGAGATCTCCTATAACAGCCACACTGCCACAGATTAGTTCGAGGTTGTTTCTGGTTTGGGGGATCCTGTGGAGCTTTCCTGAGATTATTCGATACTCTTTCTATGGCATGAAAGAGACTCTTGGTTTTGCGCCTTCCTGGCTCCAGTGGCTCAGGTATAGCACCTTCATGTTGTTGTATCCTATTGGGATCACAAGTGAAGTTGGCTTAATATATCTTGCCATGCCACACATTAAGAATTCTGAGAAGTATTGTATAAGGATGCCAAACAAGTGGAACTTCTCTTTTGATTACATCTGTGCTGCGGTTGTAGCCCTAGGATTCTATGTCCCAGGCATGCAGTCCTCACATGTACAGGTATATGCTTACGCAGAGGAAGAAAGTTATTTCAAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018812 GO:0019752 GO:0030148 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032787 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046467 GO:0071704 GO:0072330 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00062 ko01040 ko01110 ko01212 map00062 map01040 map01110 map01212

Pfam Domains

Protein Families

PTPLA

Protein Analysis

202

Amino Acids

23.3

Weight (kDa)

8.8

Isoelectric Point (pI)

60.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTPLA	PF04387	56 - 98	7.6e-12	Protein tyrosine phosphatase-like protein, PTPLA
PTPLA	PF04387	92 - 184	4.3e-28	Protein tyrosine phosphatase-like protein, PTPLA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10480 AT5G10480 AT5G10480
fragaria_vesca	FvH4_1g19690 FvH4_1g19690
malus_domestica	MD01G1038800.v1.1 MD04G1039300.v1.1 MD15G1312800.v1.1 MD15G1313000.v1.1
prunus_persica	Prupe.6G201300_v2.0.a1 Prupe.6G201300_v2.0.a1 Prupe.6G201300_v2.0.a1
pyrus_communis	pycom01g06670
rosa_chinensis	RchiOBHm_Chr2g0111251
rosa_laevigata	RLG00000017879
rosa_multiflora	Rmu_co8061266.1_g000001 Rmu_sc0001721.1_g000014 Rmu_sc0003055.1_g000014
rosa_roxburghii	Rroxscaffold_2G00132570
rosa_rugosa	Rorug02G0172000 Rorug02G0172100
rosa_samantha	Rh2AG225200 Rh2BG237000 Rh2CG228000 Rh2DG232600
rosa_wichuraiana	Rw2G017380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	118
AccII	CGCG	1 cut(s)	176
AciI	CCGC	5 cut(s)	5, 148, 171, 174, 515
AclWI	GGATC	4 cut(s)	16, 268, 281, 407
AcsI	RAATTY	1 cut(s)	448
AcuI	CTGAAG	1 cut(s)	140
AfaI	GTAC	1 cut(s)	564
AfiI	CCNNNNNNNGG	1 cut(s)	127
AflIII	ACRYGT	1 cut(s)	559
AgsI	TTSAA	1 cut(s)	601
AjnI	CCWGG	2 cut(s)	347, 541
AluBI	AGCT	1 cut(s)	285
AluI	AGCT	1 cut(s)	285
Alw26I	GTCTC	3 cut(s)	21, 81, 320
AlwI	GGATC	4 cut(s)	16, 268, 281, 407
AlwNI	CAGNNNCTG	1 cut(s)	85
Ama87I	CYCGRG	1 cut(s)	122
AoxI	GGCC	1 cut(s)	118
ApaI	GGGCCC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	512
ApoI	RAATTY	1 cut(s)	448
AspA2I	CCTAGG	1 cut(s)	526
AspLEI	GCGC	1 cut(s)	343
AspS9I	GGNCC	3 cut(s)	57, 118, 119
AsuHPI	GGTGA	1 cut(s)	223
AvaI	CYCGRG	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	57
AvrII	CCTAGG	1 cut(s)	526
BaeGI	GKGCMC	1 cut(s)	122
BamHI	GGATCC	1 cut(s)	273
BanII	GRGCYC	1 cut(s)	122
BarI	GAAGNNNNNNTAC	2 cut(s)	359, 391
BbsI	GAAGAC	1 cut(s)	107
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	1 cut(s)	66
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	2 cut(s)	349, 543
BciVI	GTATCC	1 cut(s)	399
BcoDI	GTCTC	3 cut(s)	21, 81, 320
BfaI	CTAG	1 cut(s)	527
BfuAI	ACCTGC	1 cut(s)	118
BfuI	GTATCC	1 cut(s)	399
BglI	GCCNNNNNGGC	1 cut(s)	349
BglII	AGATCT	1 cut(s)	215
BisI	GCNGC	2 cut(s)	174, 513
BlnI	CCTAGG	1 cut(s)	526
BlsI	GCNGC	2 cut(s)	175, 514
Bme1390I	CCNGG	2 cut(s)	349, 543
Bme18I	GGWCC	1 cut(s)	57
BmeT110I	CYCGRG	1 cut(s)	122
BmgT120I	GGNCC	3 cut(s)	57, 118, 119
BmiI	GGNNCC	5 cut(s)	59, 120, 121, 275, 353
BmrFI	CCNGG	2 cut(s)	349, 543
BmsI	GCATC	1 cut(s)	462
BpiI	GAAGAC	1 cut(s)	107
BpmI	CTGGAG	1 cut(s)	338
Bpu10I	CCTNAGC	1 cut(s)	362
BsaI	GGTCTC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	526, 541
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	2 cut(s)	59, 355
BseBI	CCWGG	2 cut(s)	349, 543
BseDI	CCNNGG	2 cut(s)	526, 541
BseGI	GGATG	2 cut(s)	77, 477
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	5 cut(s)	40, 92, 282, 376, 444
BseNI	ACTGG	2 cut(s)	59, 355
BseSI	GKGCMC	1 cut(s)	122
BseXI	GCAGC	1 cut(s)	499
Bsh1236I	CGCG	1 cut(s)	176
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	1 cut(s)	120
BsiEI	CGRYCG	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	524
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	3 cut(s)	21, 81, 320
BsmFI	GGGAC	1 cut(s)	524
BsnI	GGCC	1 cut(s)	120
Bso31I	GGTCTC	1 cut(s)	81
BsoBI	CYCGRG	1 cut(s)	122
Bsp120I	GGGCCC	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp1407I	TGTACA	1 cut(s)	562
Bsp143I	GATC	4 cut(s)	8, 215, 273, 399
BspACI	CCGC	5 cut(s)	5, 148, 171, 174, 515
BspANI	GGCC	1 cut(s)	120
BspCNI	CTCAG	5 cut(s)	39, 91, 283, 375, 445
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	5 cut(s)	59, 120, 121, 275, 353
BspMI	ACCTGC	1 cut(s)	118
BspPI	GGATC	4 cut(s)	16, 268, 281, 407
BspTNI	GGTCTC	1 cut(s)	81
BsrGI	TGTACA	1 cut(s)	562
BsrI	ACTGG	2 cut(s)	59, 355
BssECI	CCNNGG	2 cut(s)	526, 541
BssMI	GATC	4 cut(s)	8, 215, 273, 399
BssT1I	CCWWGG	1 cut(s)	526
Bst2UI	CCWGG	2 cut(s)	349, 543
Bst6I	CTCTTC	2 cut(s)	24, 68
BstAUI	TGTACA	1 cut(s)	562
BstC8I	GCNNGC	1 cut(s)	548
BstDEI	CTNAG	6 cut(s)	26, 78, 199, 291, 362, 453
BstF5I	GGATG	2 cut(s)	77, 477
BstFNI	CGCG	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	4 cut(s)	11, 218, 276, 402
BstMAI	GTCTC	3 cut(s)	21, 81, 320
BstMBI	GATC	4 cut(s)	8, 215, 273, 399
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 349, 358, 521
BstNI	CCWGG	2 cut(s)	349, 543
BstNSI	RCATGY	2 cut(s)	550, 563
BstSCI	CCNGG	2 cut(s)	347, 541
BstSLI	GKGCMC	1 cut(s)	122
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	499
BstV2I	GAAGAC	1 cut(s)	107
BstX2I	RGATCY	3 cut(s)	8, 215, 273
BstXI	CCANNNNNNTGG	1 cut(s)	483
BstYI	RGATCY	3 cut(s)	8, 215, 273
BsuI	GTATCC	1 cut(s)	399
BsuRI	GGCC	1 cut(s)	120
BtsCI	GGATG	2 cut(s)	77, 477
BtsI	GCAGTG	1 cut(s)	233
BtsIMutI	CAGTG	2 cut(s)	233, 362
BveI	ACCTGC	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	548
CaiI	CAGNNNCTG	1 cut(s)	85
CfoI	GCGC	1 cut(s)	343
Cfr13I	GGNCC	3 cut(s)	57, 118, 119
Csp6I	GTAC	1 cut(s)	563
CviAII	CATG	6 cut(s)	194, 319, 379, 433, 547, 560
CviJI	RGCY	9 cut(s)	34, 120, 198, 230, 285, 352, 361, 417, 524
CviKI_1	RGCY	9 cut(s)	34, 120, 198, 230, 285, 352, 361, 417, 524
CviQI	GTAC	1 cut(s)	563
DdeI	CTNAG	6 cut(s)	26, 78, 199, 291, 362, 453
DpnI	GATC	4 cut(s)	10, 217, 275, 401
DpnII	GATC	4 cut(s)	8, 215, 273, 399
Eam1104I	CTCTTC	2 cut(s)	24, 68
EarI	CTCTTC	2 cut(s)	24, 68
EciI	GGCGGA	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	526
Eco24I	GRGCYC	1 cut(s)	122
Eco31I	GGTCTC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	57
Eco57I	CTGAAG	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	122
EcoO109I	RGGNCCY	1 cut(s)	119
EcoRI	GAATTC	1 cut(s)	448
EcoRII	CCWGG	2 cut(s)	347, 541
EcoT14I	CCWWGG	1 cut(s)	526
EcoT38I	GRGCYC	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	526
FaeI	CATG	6 cut(s)	197, 322, 382, 436, 550, 563
FalI	AAGNNNNNCTT	4 cut(s)	315, 347, 473, 505
FaqI	GGGAC	1 cut(s)	524
FatI	CATG	6 cut(s)	193, 318, 378, 432, 546, 559
Fnu4HI	GCNGC	2 cut(s)	174, 513
FokI	GGATG	2 cut(s)	84, 484
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	2 cut(s)	174, 513
FspBI	CTAG	1 cut(s)	527
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	2 cut(s)	174, 513
GsuI	CTGGAG	1 cut(s)	338
HaeIII	GGCC	1 cut(s)	120
HhaI	GCGC	1 cut(s)	343
Hin1II	CATG	6 cut(s)	197, 322, 382, 436, 550, 563
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HinfI	GANTC	4 cut(s)	113, 187, 328, 531
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	3 cut(s)	29, 71, 454
Hpy188III	TCNNGA	2 cut(s)	110, 290
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	2 cut(s)	354, 385
HpyCH4V	TGCA	1 cut(s)	550
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 349, 358, 521
HpyF3I	CTNAG	6 cut(s)	26, 78, 199, 291, 362, 453
Hsp92II	CATG	6 cut(s)	197, 322, 382, 436, 550, 563
HspAI	GCGC	1 cut(s)	341
Kzo9I	GATC	4 cut(s)	8, 215, 273, 399
LmnI	GCTCC	2 cut(s)	282, 357
Lsp1109I	GCAGC	1 cut(s)	499
LweI	GCATC	1 cut(s)	462
MaeI	CTAG	1 cut(s)	527
MalI	GATC	4 cut(s)	10, 217, 275, 401
MboI	GATC	4 cut(s)	8, 215, 273, 399
MboII	GAAGA	6 cut(s)	11, 14, 55, 112, 182, 599
MflI	RGATCY	3 cut(s)	8, 215, 273
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	1 cut(s)	448
MlyI	GAGTC	1 cut(s)	322
MnlI	CCTC	6 cut(s)	56, 71, 152, 246, 565, 577
MseI	TTAA	2 cut(s)	419, 444
MslI	CAYNNNNRTG	1 cut(s)	377
MspR9I	CCNGG	2 cut(s)	349, 543
MvaI	CCWGG	2 cut(s)	349, 543
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	4 cut(s)	170, 349, 358, 521
NdeII	GATC	4 cut(s)	8, 215, 273, 399
NlaIII	CATG	6 cut(s)	197, 322, 382, 436, 550, 563
NlaIV	GGNNCC	5 cut(s)	59, 120, 121, 275, 353
NspI	RCATGY	2 cut(s)	550, 563
PaeI	GCATGC	1 cut(s)	550
PciI	ACATGT	1 cut(s)	559
PfeI	GAWTC	3 cut(s)	113, 187, 531
PkrI	GCNGC	2 cut(s)	175, 514
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PscI	ACATGT	1 cut(s)	559
Psp6I	CCWGG	2 cut(s)	347, 541
PspGI	CCWGG	2 cut(s)	347, 541
PspN4I	GGNNCC	5 cut(s)	59, 120, 121, 275, 353
PspOMI	GGGCCC	1 cut(s)	118
PspPI	GGNCC	3 cut(s)	57, 118, 119
PstNI	CAGNNNCTG	1 cut(s)	85
PsuI	RGATCY	3 cut(s)	8, 215, 273
RsaI	GTAC	1 cut(s)	564
RsaNI	GTAC	1 cut(s)	563
RseI	CAYNNNNRTG	1 cut(s)	377
SaqAI	TTAA	2 cut(s)	419, 444
SatI	GCNGC	2 cut(s)	174, 513
Sau3AI	GATC	4 cut(s)	8, 215, 273, 399
Sau96I	GGNCC	3 cut(s)	57, 118, 119
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	2 cut(s)	349, 543
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	8 cut(s)	42, 84, 132, 257, 287, 368, 377, 570
SfaNI	GCATC	1 cut(s)	462
SinI	GGWCC	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	377
SphI	GCATGC	1 cut(s)	550
Sse9I	AATT	1 cut(s)	448
SsiI	CCGC	5 cut(s)	5, 148, 171, 174, 515
SspMI	CTAG	1 cut(s)	527
StyD4I	CCNGG	2 cut(s)	347, 541
StyI	CCWWGG	1 cut(s)	526
TaqI	TCGA	3 cut(s)	144, 251, 301
TasI	AATT	1 cut(s)	448
TatI	WGTACW	1 cut(s)	562
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	3 cut(s)	113, 187, 531
Tru1I	TTAA	2 cut(s)	419, 444
Tru9I	TTAA	2 cut(s)	419, 444
TscAI	CASTG	2 cut(s)	240, 362
TseI	GCWGC	1 cut(s)	512
TspDTI	ATGAA	4 cut(s)	55, 182, 335, 367
TspRI	CASTG	2 cut(s)	240, 362
VpaK11BI	GGWCC	1 cut(s)	57
XapI	RAATTY	1 cut(s)	448
XceI	RCATGY	2 cut(s)	550, 563
XmaJI	CCTAGG	1 cut(s)	526
XspI	CTAG	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.