Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0006547

Physical Location & Seq

Genomic Coordinates Reverse (-)

13454231 .. 13457464

Gene Structure 3234 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1038800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCGGTACCATTATCCGCTCTCAGGCGCCTATACCTTTCCCTCTACAACTGGACAGTCTTCCTAGGATGGTTTCAGGTACTGTATCTTGCTCTCAAGACTCTCAAAGAATCCGGCCACCAACATGTCTACAGTGCCGTCGAACGCCCTCTGCTTCTCGCCCAATCCGCTGCCTTTTTGGAGATTCTTCATGGGCTAGTGGGTTTGGTGAGATCTCCAATAACAGCAACACTGCCGCAAATCGGTTCGAGATTGTATCTGACATGGGGAATCCTGTGGAGTTTTCCTGAGACTCGGAGTCATATGCTTGTTAGCTCTTTGGTCATCAGCTGGTCTATCACCGAGATTATTCGATACTCTTTCTTTGGTATGAAGGAGGCACTTGGTTTTGCACCTACATGGCTCTTGTGGCTCAGGTATAGCACCTTCATCTTGTTGTATCCAACTGGCATCACAAGTGAAGTTGGTCTAATATATATTGCCCTGCCACACATTAAGAACTCTGAGAAGTATTGTATAAGGATGCCAAACAAGTGGAACTTCTCTTTCGATTACTTGTATGCTGCAATTGTTGCACTAGGAATCTATGTCCCAGGGAGTCCTCACATGTACGGGTATATGCTTGGACAGAGGAAGAAAGCTCTTGCAAAAGCCAAAGGGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018812 GO:0019752 GO:0030148 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032787 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046467 GO:0071704 GO:0072330 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00062 ko01040 ko01110 ko01212 map00062 map01040 map01110 map01212

Pfam Domains

Protein Families

PTPLA

Protein Analysis

222

Amino Acids

25.22

Weight (kDa)

9.68

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTPLA	PF04387	55 - 216	8.2e-59	Protein tyrosine phosphatase-like protein, PTPLA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10480 AT5G10480 AT5G10480
fragaria_vesca	FvH4_1g19690 FvH4_1g19690
malus_domestica	MD01G1038800.v1.1 MD04G1039300.v1.1 MD15G1312800.v1.1 MD15G1313000.v1.1
prunus_persica	Prupe.6G201300_v2.0.a1 Prupe.6G201300_v2.0.a1 Prupe.6G201300_v2.0.a1
pyrus_communis	pycom01g06670
rosa_chinensis	RchiOBHm_Chr2g0111251
rosa_laevigata	RLG00000017879
rosa_multiflora	Rmu_co8061266.1_g000001 Rmu_sc0001721.1_g000014 Rmu_sc0003055.1_g000014
rosa_roxburghii	Rroxscaffold_2G00132570
rosa_rugosa	Rorug02G0172000 Rorug02G0172100
rosa_samantha	Rh2AG225200 Rh2BG237000 Rh2CG228000 Rh2DG232600
rosa_wichuraiana	Rw2G017380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	7
AccB1I	GGYRCC	2 cut(s)	7, 27
AccBSI	CCGCTC	1 cut(s)	20
AccI	GTMKAC	1 cut(s)	129
AciI	CCGC	4 cut(s)	5, 18, 168, 236
AcoI	YGGCCR	1 cut(s)	115
AcyI	GRCGYC	1 cut(s)	28
AfaI	GTAC	3 cut(s)	9, 81, 611
AfiI	CCNNNNNNNGG	2 cut(s)	24, 242
AflIII	ACRYGT	2 cut(s)	124, 606
AhdI	GACNNNNNGTC	1 cut(s)	297
AjnI	CCWGG	1 cut(s)	592
AluBI	AGCT	3 cut(s)	315, 330, 641
AluI	AGCT	3 cut(s)	315, 330, 641
Alw26I	GTCTC	1 cut(s)	284
AlwNI	CAGNNNCTG	1 cut(s)	82
AoxI	GGCC	1 cut(s)	115
ApeKI	GCWGC	2 cut(s)	170, 563
Asp718I	GGTACC	1 cut(s)	7
AspA2I	CCTAGG	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	30
AsuHPI	GGTGA	2 cut(s)	220, 331
AvrII	CCTAGG	1 cut(s)	64
BanI	GGYRCC	2 cut(s)	7, 27
BarI	GAAGNNNNNNTAC	2 cut(s)	410, 442
BbsI	GAAGAC	1 cut(s)	52
BbvI	GCAGC	2 cut(s)	157, 550
BccI	CCATC	1 cut(s)	63
BceAI	ACGGC	1 cut(s)	122
BciT130I	CCWGG	1 cut(s)	594
BciVI	GTATCC	1 cut(s)	450
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	3 cut(s)	65, 197, 578
BfmI	CTRYAG	1 cut(s)	130
BfoI	RGCGCY	1 cut(s)	31
BfuI	GTATCC	1 cut(s)	450
BglII	AGATCT	1 cut(s)	212
BisI	GCNGC	3 cut(s)	171, 236, 564
BlnI	CCTAGG	1 cut(s)	64
BlsI	GCNGC	3 cut(s)	172, 237, 565
Bme1390I	CCNGG	1 cut(s)	594
BmeRI	GACNNNNNGTC	1 cut(s)	297
BmiI	GGNNCC	2 cut(s)	9, 29
BmrFI	CCNGG	1 cut(s)	594
BmsI	GCATC	2 cut(s)	459, 513
BpiI	GAAGAC	1 cut(s)	52
Bpu10I	CCTNAGC	1 cut(s)	413
BpuEI	CTTGAG	1 cut(s)	80
BsaHI	GRCGYC	1 cut(s)	28
BsaJI	CCNNGG	3 cut(s)	64, 592, 593
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 242
Bse1I	ACTGG	2 cut(s)	56, 451
BseBI	CCWGG	1 cut(s)	594
BseDI	CCNNGG	3 cut(s)	64, 592, 593
BseGI	GGATG	2 cut(s)	74, 528
BseLI	CCNNNNNNNGG	2 cut(s)	24, 242
BseMII	CTCAG	4 cut(s)	37, 279, 427, 495
BseNI	ACTGG	2 cut(s)	56, 451
BseXI	GCAGC	2 cut(s)	157, 550
BshFI	GGCC	1 cut(s)	117
BshNI	GGYRCC	2 cut(s)	7, 27
BsiSI	CCGG	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	575
BslI	CCNNNNNNNGG	2 cut(s)	24, 242
BsmAI	GTCTC	1 cut(s)	284
BsmFI	GGGAC	1 cut(s)	575
BsnI	GGCC	1 cut(s)	117
Bsp143I	GATC	1 cut(s)	212
BspACI	CCGC	4 cut(s)	5, 18, 168, 236
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	4 cut(s)	36, 280, 426, 496
BspLI	GGNNCC	2 cut(s)	9, 29
BspT107I	GGYRCC	2 cut(s)	7, 27
BsrBI	CCGCTC	1 cut(s)	20
BsrI	ACTGG	2 cut(s)	56, 451
BssECI	CCNNGG	3 cut(s)	64, 592, 593
BssMI	GATC	1 cut(s)	212
BssNI	GRCGYC	1 cut(s)	28
BssT1I	CCWWGG	1 cut(s)	64
Bst2UI	CCWGG	1 cut(s)	594
Bst4CI	ACNGT	3 cut(s)	58, 84, 134
BstACI	GRCGYC	1 cut(s)	28
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstDEI	CTNAG	4 cut(s)	23, 288, 413, 504
BstF5I	GGATG	2 cut(s)	74, 528
BstH2I	RGCGCY	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	1 cut(s)	215
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	1 cut(s)	212
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 409, 572
BstNI	CCWGG	1 cut(s)	594
BstNSI	RCATGY	2 cut(s)	128, 610
BstSCI	CCNGG	1 cut(s)	592
BstSFI	CTRYAG	1 cut(s)	130
BstV1I	GCAGC	2 cut(s)	157, 550
BstV2I	GAAGAC	1 cut(s)	52
BstX2I	RGATCY	1 cut(s)	212
BstXI	CCANNNNNNTGG	1 cut(s)	534
BstYI	RGATCY	1 cut(s)	212
BsuI	GTATCC	1 cut(s)	450
BsuRI	GGCC	1 cut(s)	117
BtsCI	GGATG	2 cut(s)	74, 528
BtsI	GCAGTG	1 cut(s)	230
BtsIMutI	CAGTG	2 cut(s)	139, 230
CaiI	CAGNNNCTG	1 cut(s)	82
CfoI	GCGC	1 cut(s)	30
Csp6I	GTAC	3 cut(s)	8, 80, 610
CviAII	CATG	5 cut(s)	125, 191, 264, 399, 607
CviJI	RGCY	8 cut(s)	117, 196, 315, 330, 403, 412, 641, 653
CviKI_1	RGCY	8 cut(s)	117, 196, 315, 330, 403, 412, 641, 653
CviQI	GTAC	3 cut(s)	8, 80, 610
DdeI	CTNAG	4 cut(s)	23, 288, 413, 504
DinI	GGCGCC	1 cut(s)	29
DpnI	GATC	1 cut(s)	214
DpnII	GATC	1 cut(s)	212
DriI	GACNNNNNGTC	1 cut(s)	297
EaeI	YGGCCR	1 cut(s)	115
Eam1105I	GACNNNNNGTC	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	592
EcoT14I	CCWWGG	1 cut(s)	64
EgeI	GGCGCC	1 cut(s)	29
EheI	GGCGCC	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	64
FaeI	CATG	5 cut(s)	128, 194, 267, 402, 610
FalI	AAGNNNNNCTT	2 cut(s)	524, 556
FaqI	GGGAC	1 cut(s)	575
FatI	CATG	5 cut(s)	124, 190, 263, 398, 606
FauNDI	CATATG	1 cut(s)	303
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	3 cut(s)	171, 236, 564
FokI	GGATG	2 cut(s)	81, 535
Fsp4HI	GCNGC	3 cut(s)	171, 236, 564
FspBI	CTAG	3 cut(s)	65, 197, 578
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	3 cut(s)	171, 236, 564
HaeII	RGCGCY	1 cut(s)	31
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	1 cut(s)	114
HhaI	GCGC	1 cut(s)	30
Hin1I	GRCGYC	1 cut(s)	28
Hin1II	CATG	5 cut(s)	128, 194, 267, 402, 610
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HinfI	GANTC	8 cut(s)	100, 110, 184, 270, 292, 298, 582, 598
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	2 cut(s)	220, 331
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	3 cut(s)	261, 297, 505
Hpy188III	TCNNGA	3 cut(s)	97, 249, 287
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	367, 436
HpyCH4III	ACNGT	3 cut(s)	58, 84, 134
HpyCH4V	TGCA	4 cut(s)	392, 566, 575, 647
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 409, 572
HpyF3I	CTNAG	4 cut(s)	23, 288, 413, 504
Hsp92I	GRCGYC	1 cut(s)	28
Hsp92II	CATG	5 cut(s)	128, 194, 267, 402, 610
HspAI	GCGC	1 cut(s)	28
KasI	GGCGCC	1 cut(s)	27
KpnI	GGTACC	1 cut(s)	11
Kzo9I	GATC	1 cut(s)	212
Lsp1109I	GCAGC	2 cut(s)	157, 550
LweI	GCATC	2 cut(s)	459, 513
MaeI	CTAG	3 cut(s)	65, 197, 578
MalI	GATC	1 cut(s)	214
MbiI	CCGCTC	1 cut(s)	20
MboI	GATC	1 cut(s)	212
MboII	GAAGA	3 cut(s)	52, 179, 646
MfeI	CAATTG	1 cut(s)	567
MflI	RGATCY	1 cut(s)	212
MluCI	AATT	1 cut(s)	567
Mly113I	GGCGCC	1 cut(s)	28
MlyI	GAGTC	4 cut(s)	94, 286, 307, 607
MmeI	TCCRAC	1 cut(s)	467
MnlI	CCTC	5 cut(s)	53, 159, 370, 612, 624
MseI	TTAA	1 cut(s)	495
MslI	CAYNNNNRTG	2 cut(s)	123, 397
MspA1I	CMGCKG	2 cut(s)	170, 330
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	1 cut(s)	594
MunI	CAATTG	1 cut(s)	567
MvaI	CCWGG	1 cut(s)	594
MwoI	GCNNNNNNNGC	3 cut(s)	167, 409, 572
NarI	GGCGCC	1 cut(s)	28
NdeI	CATATG	1 cut(s)	303
NdeII	GATC	1 cut(s)	212
NlaIII	CATG	5 cut(s)	128, 194, 267, 402, 610
NlaIV	GGNNCC	2 cut(s)	9, 29
NspI	RCATGY	2 cut(s)	128, 610
PasI	CCCWGGG	1 cut(s)	593
PciI	ACATGT	2 cut(s)	124, 606
PfeI	GAWTC	4 cut(s)	110, 184, 270, 582
PkrI	GCNGC	3 cut(s)	172, 237, 565
PleI	GAGTC	4 cut(s)	94, 286, 306, 606
PluTI	GGCGCC	1 cut(s)	31
PpsI	GAGTC	4 cut(s)	94, 286, 306, 606
PscI	ACATGT	2 cut(s)	124, 606
Psp6I	CCWGG	1 cut(s)	592
PspGI	CCWGG	1 cut(s)	592
PspN4I	GGNNCC	2 cut(s)	9, 29
PstNI	CAGNNNCTG	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	212
PvuII	CAGCTG	1 cut(s)	330
RsaI	GTAC	3 cut(s)	9, 81, 611
RsaNI	GTAC	3 cut(s)	8, 80, 610
RseI	CAYNNNNRTG	2 cut(s)	123, 397
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	3 cut(s)	171, 236, 564
Sau3AI	GATC	1 cut(s)	212
SchI	GAGTC	4 cut(s)	94, 286, 307, 607
ScrFI	CCNGG	1 cut(s)	594
SetI	ASST	8 cut(s)	39, 81, 317, 332, 397, 419, 428, 643
SfaNI	GCATC	2 cut(s)	459, 513
SfcI	CTRYAG	1 cut(s)	130
SfoI	GGCGCC	1 cut(s)	29
SmiMI	CAYNNNNRTG	2 cut(s)	123, 397
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	567
SsiI	CCGC	4 cut(s)	5, 18, 168, 236
SspDI	GGCGCC	1 cut(s)	27
SspMI	CTAG	3 cut(s)	65, 197, 578
StyD4I	CCNGG	1 cut(s)	592
StyI	CCWWGG	1 cut(s)	64
TaaI	ACNGT	3 cut(s)	58, 84, 134
TaqI	TCGA	4 cut(s)	141, 248, 352, 549
TasI	AATT	1 cut(s)	567
TauI	GCSGC	1 cut(s)	238
TfiI	GAWTC	4 cut(s)	110, 184, 270, 582
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	2 cut(s)	139, 237
TseI	GCWGC	2 cut(s)	170, 563
TspDTI	ATGAA	3 cut(s)	179, 386, 418
TspRI	CASTG	2 cut(s)	139, 237
XceI	RCATGY	2 cut(s)	128, 610
XmaJI	CCTAGG	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	3 cut(s)	65, 197, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.