Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006547

Physical Location & Seq

Genomic Coordinates Forward (+)

31571565 .. 31572274

Gene Structure 710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1312800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCGGGACTATTATCCGCTCTCAGGCGCCTTTACCTCTCCCTCTACAACTGGACTGTCTTCCTCGGATGGTTTCAGGTACTGCGTCTTGCTCTCAAGACTCTCAGTGAATCCGGCCACCAACATGTTTACAATGCCGTCGAACGCCGTCTTCTTCTCGCCCAGTCCGCCGCCGTTTTGGAGATTGTTCATGGGCTAGTGGGTTTGGTGAGATCTCCAGTAACAGCAACACTGCCGCAAATCGGTTCACGATTGTATCTGACATGGGGAATCCTGTGGAGTTTTCCTGAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018812 GO:0019752 GO:0030148 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032787 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046467 GO:0071704 GO:0072330 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00062 ko01040 ko01110 ko01212 map00062 map01040 map01110 map01212

Pfam Domains

Protein Families

PTPLA

Protein Analysis

99

Amino Acids

11.05

Weight (kDa)

10.14

Isoelectric Point (pI)

51.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTPLA	PF04387	55 - 97	6.3e-12	Protein tyrosine phosphatase-like protein, PTPLA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10480 AT5G10480 AT5G10480
fragaria_vesca	FvH4_1g19690 FvH4_1g19690
malus_domestica	MD01G1038800.v1.1 MD04G1039300.v1.1 MD15G1312800.v1.1 MD15G1313000.v1.1
prunus_persica	Prupe.6G201300_v2.0.a1 Prupe.6G201300_v2.0.a1 Prupe.6G201300_v2.0.a1
pyrus_communis	pycom01g06670
rosa_chinensis	RchiOBHm_Chr2g0111251
rosa_laevigata	RLG00000017879
rosa_multiflora	Rmu_co8061266.1_g000001 Rmu_sc0001721.1_g000014 Rmu_sc0003055.1_g000014
rosa_roxburghii	Rroxscaffold_2G00132570
rosa_rugosa	Rorug02G0172000 Rorug02G0172100
rosa_samantha	Rh2AG225200 Rh2BG237000 Rh2CG228000 Rh2DG232600
rosa_wichuraiana	Rw2G017380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	27
AccBSI	CCGCTC	1 cut(s)	20
AciI	CCGC	5 cut(s)	5, 18, 168, 171, 236
AcoI	YGGCCR	1 cut(s)	115
AcyI	GRCGYC	1 cut(s)	28
AfaI	GTAC	1 cut(s)	81
AfiI	CCNNNNNNNGG	2 cut(s)	24, 242
AflIII	ACRYGT	1 cut(s)	124
AlwNI	CAGNNNCTG	1 cut(s)	82
AoxI	GGCC	1 cut(s)	115
AspLEI	GCGC	1 cut(s)	30
AsuHPI	GGTGA	1 cut(s)	220
AxyI	CCTNAGG	1 cut(s)	288
BaeI	ACNNNNGTAYC	2 cut(s)	239, 272
BanI	GGYRCC	1 cut(s)	27
BbsI	GAAGAC	2 cut(s)	52, 143
BccI	CCATC	1 cut(s)	63
BceAI	ACGGC	3 cut(s)	122, 132, 158
BfaI	CTAG	1 cut(s)	197
BfoI	RGCGCY	1 cut(s)	31
BglII	AGATCT	1 cut(s)	212
BisI	GCNGC	2 cut(s)	171, 236
BlsI	GCNGC	2 cut(s)	172, 237
BmiI	GGNNCC	1 cut(s)	29
BmrI	ACTGGG	1 cut(s)	157
BmuI	ACTGGG	1 cut(s)	157
BpiI	GAAGAC	2 cut(s)	52, 143
BpmI	CTGGAG	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	80
BsaHI	GRCGYC	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 242
Bse1I	ACTGG	3 cut(s)	56, 163, 218
Bse21I	CCTNAGG	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	64
BseGI	GGATG	1 cut(s)	74
BseLI	CCNNNNNNNGG	2 cut(s)	24, 242
BseMII	CTCAG	3 cut(s)	37, 118, 279
BseNI	ACTGG	3 cut(s)	56, 163, 218
BshFI	GGCC	1 cut(s)	117
BshNI	GGYRCC	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	2 cut(s)	24, 242
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	117
Bsp143I	GATC	1 cut(s)	212
BspACI	CCGC	5 cut(s)	5, 18, 168, 171, 236
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	3 cut(s)	36, 117, 280
BspLI	GGNNCC	1 cut(s)	29
BspT107I	GGYRCC	1 cut(s)	27
BsrBI	CCGCTC	1 cut(s)	20
BsrI	ACTGG	3 cut(s)	56, 163, 218
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	1 cut(s)	212
BssNI	GRCGYC	1 cut(s)	28
Bst4CI	ACNGT	1 cut(s)	58
BstACI	GRCGYC	1 cut(s)	28
BstDEI	CTNAG	3 cut(s)	23, 104, 288
BstF5I	GGATG	1 cut(s)	74
BstH2I	RGCGCY	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	1 cut(s)	215
BstMBI	GATC	1 cut(s)	212
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNSI	RCATGY	1 cut(s)	128
BstV2I	GAAGAC	2 cut(s)	52, 143
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
Bsu36I	CCTNAGG	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	74
BtsI	GCAGTG	1 cut(s)	230
BtsIMutI	CAGTG	2 cut(s)	112, 230
CaiI	CAGNNNCTG	1 cut(s)	82
CfoI	GCGC	1 cut(s)	30
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	80
CviAII	CATG	3 cut(s)	125, 191, 264
CviJI	RGCY	2 cut(s)	117, 196
CviKI_1	RGCY	2 cut(s)	117, 196
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	3 cut(s)	23, 104, 288
DinI	GGCGCC	1 cut(s)	29
DpnI	GATC	1 cut(s)	214
DpnII	GATC	1 cut(s)	212
EaeI	YGGCCR	1 cut(s)	115
EciI	GGCGGA	1 cut(s)	157
Eco81I	CCTNAGG	1 cut(s)	288
EgeI	GGCGCC	1 cut(s)	29
EheI	GGCGCC	1 cut(s)	29
FaeI	CATG	3 cut(s)	128, 194, 267
FaiI	YATR	3 cut(s)	126, 192, 265
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	3 cut(s)	124, 190, 263
Fnu4HI	GCNGC	2 cut(s)	171, 236
FokI	GGATG	1 cut(s)	81
Fsp4HI	GCNGC	2 cut(s)	171, 236
FspBI	CTAG	1 cut(s)	197
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	2 cut(s)	171, 236
GsuI	CTGGAG	1 cut(s)	201
HaeII	RGCGCY	1 cut(s)	31
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	1 cut(s)	114
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	1 cut(s)	30
Hin1I	GRCGYC	1 cut(s)	28
Hin1II	CATG	3 cut(s)	128, 194, 267
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HinfI	GANTC	3 cut(s)	100, 110, 270
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	2 cut(s)	130, 248
Hpy188I	TCNGA	2 cut(s)	68, 261
Hpy188III	TCNNGA	3 cut(s)	97, 249, 287
Hpy8I	GTNNAC	2 cut(s)	130, 248
Hpy99I	CGWCG	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	58
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	3 cut(s)	23, 104, 288
Hsp92I	GRCGYC	1 cut(s)	28
Hsp92II	CATG	3 cut(s)	128, 194, 267
HspAI	GCGC	1 cut(s)	28
KasI	GGCGCC	1 cut(s)	27
Kzo9I	GATC	1 cut(s)	212
LpnPI	CCDG	7 cut(s)	10, 37, 62, 127, 176, 231, 287
MaeI	CTAG	1 cut(s)	197
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	1 cut(s)	214
MbiI	CCGCTC	1 cut(s)	20
MboI	GATC	1 cut(s)	212
MboII	GAAGA	3 cut(s)	52, 143, 146
MflI	RGATCY	1 cut(s)	212
Mly113I	GGCGCC	1 cut(s)	28
MlyI	GAGTC	1 cut(s)	94
MnlI	CCTC	4 cut(s)	47, 53, 74, 283
MslI	CAYNNNNRTG	1 cut(s)	123
MspI	CCGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	167
NarI	GGCGCC	1 cut(s)	28
NdeII	GATC	1 cut(s)	212
NlaIII	CATG	3 cut(s)	128, 194, 267
NlaIV	GGNNCC	1 cut(s)	29
NspI	RCATGY	1 cut(s)	128
PciI	ACATGT	1 cut(s)	124
PfeI	GAWTC	2 cut(s)	110, 270
PkrI	GCNGC	2 cut(s)	172, 237
PleI	GAGTC	1 cut(s)	94
PluTI	GGCGCC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	94
PscI	ACATGT	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	29
PstNI	CAGNNNCTG	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	212
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
RseI	CAYNNNNRTG	1 cut(s)	123
SatI	GCNGC	2 cut(s)	171, 236
Sau3AI	GATC	1 cut(s)	212
SchI	GAGTC	1 cut(s)	94
SetI	ASST	3 cut(s)	39, 81, 294
SfoI	GGCGCC	1 cut(s)	29
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SsiI	CCGC	5 cut(s)	5, 18, 168, 171, 236
SspDI	GGCGCC	1 cut(s)	27
SspMI	CTAG	1 cut(s)	197
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	1 cut(s)	141
TauI	GCSGC	2 cut(s)	173, 238
TfiI	GAWTC	2 cut(s)	110, 270
TscAI	CASTG	2 cut(s)	112, 237
TspDTI	ATGAA	1 cut(s)	179
TspRI	CASTG	2 cut(s)	112, 237
XceI	RCATGY	1 cut(s)	128
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.