Rh2DG232600

Catalyzes the third of the four reactions of the long- chain fatty acids elongation cycle. This endoplasmic reticulum- bound enzymatic process, allows the addition of two carbons to the chain of long- and very long-chain fatty acids VLCFAs per cycle. This enzyme catalyzes the dehydration of the 3-hydroxyacyl-CoA intermediate into trans-2,3-enoyl-CoA, within each cycle of fatty acid elongation. Thereby, it participates to the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors of membrane lipids and lipid mediators

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
23108548 .. 23111814
3267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG232600.1

Sequence Viewer

Length: 849 bp
ATGACCATTAAAGACCATGGCAGACGAAACTTACAAGTTGAAGTGGTTGCAACGTTGAGCTACTCACCTGCACATTTGTCTGACTCTTTATTACACGCTAGCCTGGTTGGCTATATATTATTAGAAAGAGGGGTGCTGGTGCTGGTGCTGGTGCTTGCTTCTTTGGATCCACCACAGTGTACGGCTTTCATGGCGGGATCTTTGTCTCTTCTTCTCAGACGGCTTTACCTTTCCCTCTACAACTGGACCCTCTTCATCGGATGGTCTCAGGTGCTGTATCTTGCTGTGAAGACACTTCGGGAATCGGGCCCCGGGCAGGTTTACAATGCCCTCGACCGCCCACTTCAGTTTGCTCAATCCGCCGCGTTTTTGGAGATTCTTCATGGCTTAGTGGGTTTGGTGAGATCTCCTATAACAGCCACACTGCCACAGATTAGTTCGAGGTTGTTTCTGGTTTGGGGGATCCTGTGGAGCTTTCCTGAGACTCAGAGTCATGTCCTTGTGAGCTCTTTGGTCATCAGCTGGTCCATCACTGAGATTATTCGATACTCTTTCTATGGCATGAAAGAGACTCTTGGTTTTGCGCCTTCCTGGCTCCAGTGGCTCAGGTATAGCACCTTCATGTTGTTGTATCCAATTGGGATCACAAGTGAAGTTGGCTTAATATATCTTGCCATGCCACACATTAAGAATTCTGAGAAGTATTGTATAAGGATGCCAAACAAGTGGAACTTCTCTTTTGATTACATCTGTGCTGCGATTGTAGCCCTAGGATTCTACGTCCCAGGCATTCCTCACATGTACAGATGGAATTTCAGTCTAAAAAAGACTTTTGTCTTCGCCATGTAA

Protein Analysis

282

Amino Acids

32.04

Weight (kDa)

9.32

Isoelectric Point (pI)

50.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTPLA PF04387 119 - 270 3.8e-53 Protein tyrosine phosphatase-like protein, PTPLA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 76
Acc36I ACCTGC 2 cut(s) 76, 307
AccII CGCG 1 cut(s) 365
AciI CCGC 4 cut(s) 194, 337, 360, 363
AclI AACGTT 1 cut(s) 53
AclWI GGATC 6 cut(s) 161, 174, 205, 457, 470, 650
AcsI RAATTY 2 cut(s) 691, 811
AcuI CTGAAG 1 cut(s) 329
AfaI GTAC 2 cut(s) 181, 803
AfiI CCNNNNNNNGG 1 cut(s) 316
AflIII ACRYGT 1 cut(s) 798
AgsI TTSAA 1 cut(s) 41
AhdI GACNNNNNGTC 1 cut(s) 489
AjnI CCWGG 3 cut(s) 102, 590, 784
AleI CACNNNNGTG 1 cut(s) 175
AluBI AGCT 4 cut(s) 60, 474, 507, 522
AluI AGCT 4 cut(s) 60, 474, 507, 522
Alw21I GWGCWC 1 cut(s) 509
Alw26I GTCTC 4 cut(s) 210, 270, 476, 563
AlwI GGATC 6 cut(s) 161, 174, 205, 457, 470, 650
AlwNI CAGNNNCTG 1 cut(s) 274
Ama87I CYCGRG 1 cut(s) 311
AoxI GGCC 1 cut(s) 307
ApaI GGGCCC 1 cut(s) 311
ApeKI GCWGC 1 cut(s) 755
ApoI RAATTY 2 cut(s) 691, 811
AspA2I CCTAGG 1 cut(s) 769
AspLEI GCGC 1 cut(s) 586
AspS9I GGNCC 4 cut(s) 246, 307, 308, 525
AsuC2I CCSGG 2 cut(s) 312, 313
AsuHPI GGTGA 2 cut(s) 57, 412
AsuNHI GCTAGC 1 cut(s) 98
AvaI CYCGRG 1 cut(s) 311
AvaII GGWCC 2 cut(s) 246, 525
AvrII CCTAGG 1 cut(s) 769
BaeGI GKGCMC 1 cut(s) 311
BamHI GGATCC 2 cut(s) 166, 462
BanII GRGCYC 2 cut(s) 311, 509
BarI GAAGNNNNNNTAC 2 cut(s) 602, 634
BbsI GAAGAC 2 cut(s) 296, 829
Bbv12I GWGCWC 1 cut(s) 509
BbvI GCAGC 1 cut(s) 742
BccI CCATC 3 cut(s) 255, 536, 801
BceAI ACGGC 2 cut(s) 198, 236
BciT130I CCWGG 3 cut(s) 104, 592, 786
BciVI GTATCC 1 cut(s) 642
BcnI CCSGG 2 cut(s) 312, 313
BcoDI GTCTC 4 cut(s) 210, 270, 476, 563
BfaI CTAG 2 cut(s) 99, 770
BfuAI ACCTGC 2 cut(s) 76, 307
BfuI GTATCC 1 cut(s) 642
BglI GCCNNNNNGGC 2 cut(s) 108, 592
BglII AGATCT 1 cut(s) 404
BisI GCNGC 2 cut(s) 363, 756
BlnI CCTAGG 1 cut(s) 769
BlsI GCNGC 2 cut(s) 364, 757
Bme1390I CCNGG 5 cut(s) 104, 312, 313, 592, 786
Bme18I GGWCC 2 cut(s) 246, 525
BmeRI GACNNNNNGTC 1 cut(s) 489
BmeT110I CYCGRG 1 cut(s) 311
BmgT120I GGNCC 4 cut(s) 246, 307, 308, 525
BmiI GGNNCC 6 cut(s) 168, 248, 309, 310, 464, 596
BmrFI CCNGG 5 cut(s) 104, 312, 313, 592, 786
BmsI GCATC 1 cut(s) 705
BmtI GCTAGC 1 cut(s) 102
BoxI GACNNNNGTC 1 cut(s) 833
BpiI GAAGAC 2 cut(s) 296, 829
BpmI CTGGAG 1 cut(s) 581
Bpu10I CCTNAGC 1 cut(s) 605
BpuMI CCSGG 2 cut(s) 312, 313
BsaI GGTCTC 1 cut(s) 270
BsaJI CCNNGG 5 cut(s) 16, 310, 311, 769, 784
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse1I ACTGG 2 cut(s) 248, 598
BseBI CCWGG 3 cut(s) 104, 592, 786
BseDI CCNNGG 5 cut(s) 16, 310, 311, 769, 784
BseGI GGATG 2 cut(s) 266, 720
BseLI CCNNNNNNNGG 1 cut(s) 316
BseMII CTCAG 7 cut(s) 229, 281, 471, 500, 525, 619, 687
BseNI ACTGG 2 cut(s) 248, 598
BseSI GKGCMC 1 cut(s) 311
BseXI GCAGC 1 cut(s) 742
BsgI GTGCAG 1 cut(s) 54
Bsh1236I CGCG 1 cut(s) 365
Bsh1285I CGRYCG 1 cut(s) 337
BshFI GGCC 1 cut(s) 309
BsiEI CGRYCG 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 509
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 1 cut(s) 312
BslFI GGGAC 1 cut(s) 767
BslI CCNNNNNNNGG 1 cut(s) 316
BsmAI GTCTC 4 cut(s) 210, 270, 476, 563
BsmFI GGGAC 1 cut(s) 767
BsmI GAATGC 1 cut(s) 789
BsnI GGCC 1 cut(s) 309
Bso31I GGTCTC 1 cut(s) 270
BsoBI CYCGRG 1 cut(s) 311
Bsp120I GGGCCC 1 cut(s) 307
Bsp1286I GDGCHC 2 cut(s) 311, 509
Bsp1407I TGTACA 1 cut(s) 801
Bsp143I GATC 5 cut(s) 166, 197, 404, 462, 642
Bsp19I CCATGG 1 cut(s) 16
BspACI CCGC 4 cut(s) 194, 337, 360, 363
BspANI GGCC 1 cut(s) 309
BspCNI CTCAG 7 cut(s) 228, 280, 472, 499, 526, 618, 688
BspFNI CGCG 1 cut(s) 365
BspLI GGNNCC 6 cut(s) 168, 248, 309, 310, 464, 596
BspMI ACCTGC 2 cut(s) 76, 307
BspOI GCTAGC 1 cut(s) 102
BspPI GGATC 6 cut(s) 161, 174, 205, 457, 470, 650
BspTNI GGTCTC 1 cut(s) 270
BsrGI TGTACA 1 cut(s) 801
BsrI ACTGG 2 cut(s) 248, 598
BssECI CCNNGG 5 cut(s) 16, 310, 311, 769, 784
BssMI GATC 5 cut(s) 166, 197, 404, 462, 642
BssT1I CCWWGG 2 cut(s) 16, 769
Bst2UI CCWGG 3 cut(s) 104, 592, 786
Bst4CI ACNGT 1 cut(s) 177
Bst6I CTCTTC 2 cut(s) 213, 257
BstAUI TGTACA 1 cut(s) 801
BstC8I GCNNGC 2 cut(s) 100, 156
BstDEI CTNAG 8 cut(s) 215, 267, 388, 480, 486, 534, 605, 696
BstDSI CCRYGG 1 cut(s) 16
BstF5I GGATG 2 cut(s) 266, 720
BstFNI CGCG 1 cut(s) 365
BstHHI GCGC 1 cut(s) 586
BstKTI GATC 5 cut(s) 169, 200, 407, 465, 645
BstMAI GTCTC 4 cut(s) 210, 270, 476, 563
BstMBI GATC 5 cut(s) 166, 197, 404, 462, 642
BstMCI CGRYCG 1 cut(s) 337
BstMWI GCNNNNNNNGC 6 cut(s) 108, 191, 359, 592, 601, 764
BstNI CCWGG 3 cut(s) 104, 592, 786
BstNSI RCATGY 1 cut(s) 802
BstPAI GACNNNNGTC 1 cut(s) 833
BstSCI CCNGG 5 cut(s) 102, 310, 311, 590, 784
BstSLI GKGCMC 1 cut(s) 311
BstUI CGCG 1 cut(s) 365
BstV1I GCAGC 1 cut(s) 742
BstV2I GAAGAC 2 cut(s) 296, 829
BstX2I RGATCY 4 cut(s) 166, 197, 404, 462
BstXI CCANNNNNNTGG 1 cut(s) 726
BstYI RGATCY 4 cut(s) 166, 197, 404, 462
BsuI GTATCC 1 cut(s) 642
BsuRI GGCC 1 cut(s) 309
BtgI CCRYGG 1 cut(s) 16
BtsCI GGATG 2 cut(s) 266, 720
BtsI GCAGTG 1 cut(s) 422
BtsIMutI CAGTG 4 cut(s) 182, 422, 531, 605
BveI ACCTGC 2 cut(s) 76, 307
Cac8I GCNNGC 2 cut(s) 100, 156
CaiI CAGNNNCTG 1 cut(s) 274
CfoI GCGC 1 cut(s) 586
Cfr13I GGNCC 4 cut(s) 246, 307, 308, 525
Cfr9I CCCGGG 1 cut(s) 311
Csp6I GTAC 2 cut(s) 180, 802
CviAII CATG 9 cut(s) 17, 190, 383, 494, 562, 622, 676, 799, 844
CviQI GTAC 2 cut(s) 180, 802
DdeI CTNAG 8 cut(s) 215, 267, 388, 480, 486, 534, 605, 696
DpnI GATC 5 cut(s) 168, 199, 406, 464, 644
DpnII GATC 5 cut(s) 166, 197, 404, 462, 642
DriI GACNNNNNGTC 1 cut(s) 489
Eam1104I CTCTTC 2 cut(s) 213, 257
Eam1105I GACNNNNNGTC 1 cut(s) 489
EarI CTCTTC 2 cut(s) 213, 257
EciI GGCGGA 1 cut(s) 349
Ecl136II GAGCTC 1 cut(s) 507
Eco130I CCWWGG 2 cut(s) 16, 769
Eco24I GRGCYC 2 cut(s) 311, 509
Eco31I GGTCTC 1 cut(s) 270
Eco47I GGWCC 2 cut(s) 246, 525
Eco53kI GAGCTC 1 cut(s) 507
Eco57I CTGAAG 1 cut(s) 329
Eco88I CYCGRG 1 cut(s) 311
EcoICRI GAGCTC 1 cut(s) 507
EcoO109I RGGNCCY 1 cut(s) 308
EcoRI GAATTC 1 cut(s) 691
EcoRII CCWGG 3 cut(s) 102, 590, 784
EcoT14I CCWWGG 2 cut(s) 16, 769
EcoT38I GRGCYC 2 cut(s) 311, 509
ErhI CCWWGG 2 cut(s) 16, 769
FaeI CATG 9 cut(s) 20, 193, 386, 497, 565, 625, 679, 802, 847
FalI AAGNNNNNCTT 4 cut(s) 558, 590, 716, 748
FaqI GGGAC 1 cut(s) 767
FatI CATG 9 cut(s) 16, 189, 382, 493, 561, 621, 675, 798, 843
FauI CCCGC 1 cut(s) 187
Fnu4HI GCNGC 2 cut(s) 363, 756
FokI GGATG 2 cut(s) 273, 727
FriOI GRGCYC 2 cut(s) 311, 509
Fsp4HI GCNGC 2 cut(s) 363, 756
FspBI CTAG 2 cut(s) 99, 770
GlaI GCGC 1 cut(s) 585
GluI GCNGC 2 cut(s) 363, 756
GsuI CTGGAG 1 cut(s) 581
HaeIII GGCC 1 cut(s) 309
HapII CCGG 1 cut(s) 312
HhaI GCGC 1 cut(s) 586
Hin1II CATG 9 cut(s) 20, 193, 386, 497, 565, 625, 679, 802, 847
Hin6I GCGC 1 cut(s) 584
HinP1I GCGC 1 cut(s) 584
HinfI GANTC 7 cut(s) 83, 302, 376, 484, 490, 571, 774
HpaII CCGG 1 cut(s) 312
HphI GGTGA 2 cut(s) 57, 412
Hpy166II GTNNAC 2 cut(s) 180, 322
Hpy188I TCNGA 5 cut(s) 82, 218, 260, 489, 697
Hpy188III TCNNGA 2 cut(s) 299, 479
Hpy8I GTNNAC 2 cut(s) 180, 322
HpyAV CCTTC 2 cut(s) 597, 628
HpyCH4III ACNGT 1 cut(s) 177
HpyCH4IV ACGT 2 cut(s) 53, 780
HpyCH4V TGCA 2 cut(s) 50, 71
HpyF10VI GCNNNNNNNGC 6 cut(s) 108, 191, 359, 592, 601, 764
HpyF3I CTNAG 8 cut(s) 215, 267, 388, 480, 486, 534, 605, 696
HpySE526I ACGT 2 cut(s) 53, 780
Hsp92II CATG 9 cut(s) 20, 193, 386, 497, 565, 625, 679, 802, 847
HspAI GCGC 1 cut(s) 584
Kzo9I GATC 5 cut(s) 166, 197, 404, 462, 642
LmnI GCTCC 2 cut(s) 471, 600
Lsp1109I GCAGC 1 cut(s) 742
LweI GCATC 1 cut(s) 705
MaeI CTAG 2 cut(s) 99, 770
MaeII ACGT 2 cut(s) 53, 780
MalI GATC 5 cut(s) 168, 199, 406, 464, 644
MboI GATC 5 cut(s) 166, 197, 404, 462, 642
MboII GAAGA 6 cut(s) 200, 203, 244, 301, 371, 829
MfeI CAATTG 1 cut(s) 636
MflI RGATCY 4 cut(s) 166, 197, 404, 462
MhlI GDGCHC 2 cut(s) 311, 509
MluCI AATT 3 cut(s) 636, 691, 811
MlyI GAGTC 4 cut(s) 77, 478, 499, 565
MnlI CCTC 6 cut(s) 122, 245, 260, 341, 435, 804
MseI TTAA 3 cut(s) 9, 662, 687
MslI CAYNNNNRTG 2 cut(s) 175, 620
MspA1I CMGCKG 1 cut(s) 522
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 5 cut(s) 104, 312, 313, 592, 786
MunI CAATTG 1 cut(s) 636
Mva1269I GAATGC 1 cut(s) 789
MvaI CCWGG 3 cut(s) 104, 592, 786
MvnI CGCG 1 cut(s) 365
MwoI GCNNNNNNNGC 6 cut(s) 108, 191, 359, 592, 601, 764
NciI CCSGG 2 cut(s) 312, 313
NcoI CCATGG 1 cut(s) 16
NdeII GATC 5 cut(s) 166, 197, 404, 462, 642
NheI GCTAGC 1 cut(s) 98
NlaIII CATG 9 cut(s) 20, 193, 386, 497, 565, 625, 679, 802, 847
NlaIV GGNNCC 6 cut(s) 168, 248, 309, 310, 464, 596
NspI RCATGY 1 cut(s) 802
OliI CACNNNNGTG 1 cut(s) 175
PaqCI CACCTGC 1 cut(s) 76
PciI ACATGT 1 cut(s) 798
PctI GAATGC 1 cut(s) 789
PfeI GAWTC 3 cut(s) 302, 376, 774
PkrI GCNGC 2 cut(s) 364, 757
PleI GAGTC 4 cut(s) 77, 478, 498, 565
PpsI GAGTC 4 cut(s) 77, 478, 498, 565
PscI ACATGT 1 cut(s) 798
PshAI GACNNNNGTC 1 cut(s) 833
Psp124BI GAGCTC 1 cut(s) 509
Psp1406I AACGTT 1 cut(s) 53
Psp6I CCWGG 3 cut(s) 102, 590, 784
PspGI CCWGG 3 cut(s) 102, 590, 784
PspN4I GGNNCC 6 cut(s) 168, 248, 309, 310, 464, 596
PspOMI GGGCCC 1 cut(s) 307
PspPI GGNCC 4 cut(s) 246, 307, 308, 525
PstNI CAGNNNCTG 1 cut(s) 274
PsuI RGATCY 4 cut(s) 166, 197, 404, 462
PvuII CAGCTG 1 cut(s) 522
RsaI GTAC 2 cut(s) 181, 803
RsaNI GTAC 2 cut(s) 180, 802
RseI CAYNNNNRTG 2 cut(s) 175, 620
SacI GAGCTC 1 cut(s) 509
SaqAI TTAA 3 cut(s) 9, 662, 687
SatI GCNGC 2 cut(s) 363, 756
Sau3AI GATC 5 cut(s) 166, 197, 404, 462, 642
Sau96I GGNCC 4 cut(s) 246, 307, 308, 525
SchI GAGTC 4 cut(s) 77, 478, 499, 565
ScrFI CCNGG 5 cut(s) 104, 312, 313, 592, 786
SduI GDGCHC 2 cut(s) 311, 509
SfaNI GCATC 1 cut(s) 705
SinI GGWCC 2 cut(s) 246, 525
SmaI CCCGGG 1 cut(s) 313
SmiMI CAYNNNNRTG 2 cut(s) 175, 620
Sse9I AATT 3 cut(s) 636, 691, 811
SsiI CCGC 4 cut(s) 194, 337, 360, 363
SspMI CTAG 2 cut(s) 99, 770
SstI GAGCTC 1 cut(s) 509
StyD4I CCNGG 5 cut(s) 102, 310, 311, 590, 784
StyI CCWWGG 2 cut(s) 16, 769
TaaI ACNGT 1 cut(s) 177
TaiI ACGT 2 cut(s) 56, 783
TaqI TCGA 3 cut(s) 333, 440, 544
TasI AATT 3 cut(s) 636, 691, 811
TatI WGTACW 1 cut(s) 801
TauI GCSGC 1 cut(s) 365
TfiI GAWTC 3 cut(s) 302, 376, 774
Tru1I TTAA 3 cut(s) 9, 662, 687
Tru9I TTAA 3 cut(s) 9, 662, 687
TscAI CASTG 4 cut(s) 182, 429, 538, 605
TseI GCWGC 1 cut(s) 755
TspDTI ATGAA 5 cut(s) 178, 244, 371, 578, 610
TspMI CCCGGG 1 cut(s) 311
TspRI CASTG 4 cut(s) 182, 429, 538, 605
VpaK11BI GGWCC 2 cut(s) 246, 525
XapI RAATTY 2 cut(s) 691, 811
XceI RCATGY 1 cut(s) 802
XmaI CCCGGG 1 cut(s) 311
XmaJI CCTAGG 1 cut(s) 769
XspI CTAG 2 cut(s) 99, 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.