Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002372

Physical Location & Seq

Genomic Coordinates Forward (+)

3633649 .. 3636934

Gene Structure 3286 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G11390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2112 bp

ATGGAAACAGAAACGGAACATGATAGAACTGTCTCTGTCGATGACAACGACAGCCTTGTACCTGAGCCAAGCTCAACGAAAGAAAGCTTTTTTGAAGATCTCTCGCTTACTGGGCAAGTTATGAATCCTCAACTTTCAAGTGCAGGCGAAGTTTTGACAAAAGTTGAATTGGATTTTGCTTTTGTCTCTGAGAAATTGGTCAATCTTAGTCTTCTTACTATGCAACTCGGCACGAGGGAAAATGATTTTGAGTCTTTTGTTTCTAAGAAAGAAGAAGATGAAGAAGAGCCTTCGAGTAATGTTGATGATGATGATGATTCTGCTGAGAAGGCATTGGAGTTTGATCTCTTGTCTTCAATTCTCAATTCAGAGGTGAAAGAACTTGAATCGCTTCTTGGTTTTCTCCAGAACGAGATTCAAAGCGCCCGTGTCATGATATCTCCGTTTCAACATGATGGAGAAGCTTTCTTGGATTTGGAAGGGAAGTTGAATGATACTGAACAATCTTTGGGTCAGTTAATGGAACAAGTAGTGGAAATGAAGAAGCAATCTTCTAACTTTCAGAGGTTATCTTCTGGTTTGGATGAACAAGGAAGCTGGTCTGGAGGGCAAACTTCAGTGTCTCAAAACGATGGTGAGTTTGGTGATCTGAGCGCTAAGATCAATATGCAGACTGCTGATCAGCAAAGGAATGTTTTAAGGATGCTTGAGAAATCTTTGGCTAAGGAGATGGAACTTGAGAAGAAACTAAGTGAATCAAGAAATACTGAACGAGAACTAGAGATGAAACTGTATTCTTCTGAGCAGGATGTTGTCTACATGGAAGAAGTAACCGAAGATGCGTTCTCCAGGTGGCTTGAGGCAGATAATGCTGCTGAAGTCTTTAAGGGAACGTCAAAGGAGATGTCTGGAAAACTCCAGATTCTTCAGTTCAATCTAAGTGGCTCTTTTAAGCGGGAAGACAACTTGAAGTCTAAGCTTGTTGATTCAAAGGAACGTTTAGAAGCTAAGGAATGCGCCTTGCACAAGCTTGATAGCAGCAATGCAAGACTTGCTGACTTTCTTGTGGCACAAACAGAAGGCTTAAAAGAGAGTTTGCAAGAGGCTGAAGAAAAATTGATTTTGTTGAACACTGAGAATTCCACATTAAGTGAGAAAGTTAGCTCCCTTGAAGAACAACTGAATGAATATGGGATTCAAACAGAAGATGCGGATGCTACTTCTGGTGCTCTGATAACAGATCTTGAACGTATCAACGAGGAACTGAAAGATAAATTAGCCAAAACTGAAGCAAGGGCTGAGGAAACAGAATCCAAGTGCAAAATCCTAGAAGAAAGCAAAAAGGAGCTTCAAGACGAGTTGGGGAATTTCAGAGACAAGGGCTTCACTATACATAAGTTAGCATCGCTTGAGAAACACTTGAGGGACTCAGATCTACAACTAGAACATGCAGTTGCAGCTGTTGAAGCAAGTAAAGAAAAGCAGAACTTGTTATATTCTACTGTTTCTGATATGGAGGATGTGATCGAGGATCTAAAATCAAAAGTTTTGAAGGCTGAAAACAGGGCCGACATTACCGAAGAGAAGTTGATCATGGTATCTGAGTCTAACGCAGAGGTCAACGAAGAACTGAAATTCTTTAAGGGTAGATTGAAAGAAGGGGAGAAATATTTACAGCAAGCAGAAGAAAGAAAATTGCGAACCGCCAAAGATATCGGGGTACATAACAAGATCATGAAAAAACTGGTCATGCAACTAGCTGCTGAACGAGAACGACTTCATAAACAGATAACTAACCTGTCAAGAGAGAATTGTGTGTTGATGGTGAAGTTGAAAAAGGTTGGAAAAACTGGTTATATGGAAAGTGGCAATGGAAGTGAAGTTTCACCAAAGTCGGACCAGAATGCTTCTTCTTGCCATCAAGGAAGTAGACTTCAAGCCACCTTCATTTCATTAACTAATCCAGAGGAGGAAGAAACAGGTTCAAAATCAGATATTGGAAGTGTAAGGAGATTAGATGTTGGAGCTCTTAGGTTCAAACACATTCTCGTTGCAATACTCGTGATCTTAATATCGTCGATAGCTTATGTTATATCCCAGCAAAACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0008150 GO:0008360 GO:0012505 GO:0016020 GO:0022603 GO:0022604 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0032878 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0065007 GO:0065008 GO:2000769

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

703

Amino Acids

79.05

Weight (kDa)

4.7

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WIT1_2_N	PF26581	46 - 192	4.8e-48	WIT1/2, N-terminal helical bundle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11390
fragaria_vesca	FvH4_2g13612 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070
malus_domestica	MD09G1077300.v1.1 MD17G1067700.v1.1
prunus_persica	Prupe.3G246700_v2.0.a1
pyrus_communis	pycom09g00440 pycom17g06810
rosa_chinensis	RchiOBHm_Chr2g0164391 RchiOBHm_Chr6g0275231
rosa_laevigata	RLG00000013484 RLG00000021457
rosa_multiflora	Rmu_sc0009487.1_g000004 Rmu_sc0010331.1_g000002 Rmu_sc0015626.1_g000002 Rmu_sc0022221.1_g000006 Rmu_ssc0000041.1_g000026
rosa_roxburghii	Rroxscaffold_2G00086600 Rroxscaffold_7G00193530
rosa_rugosa	Rorug02G0508300 Rorug06G0090400
rosa_samantha	Rh2AG576300 Rh2BG587300 Rh2CG558100 Rh2DG597000 Rh6AG203700 Rh6BG206600 Rh6CG209200 Rh6DG199200
rosa_wichuraiana	Rw2G047730 Rw2G047830 Rw6G017690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	816, 1930
AciI	CCGC	3 cut(s)	955, 1211, 1704
AclI	AACGTT	1 cut(s)	997
AclWI	GGATC	1 cut(s)	1539
AcsI	RAATTY	3 cut(s)	1138, 1366, 1634
AcuI	CTGAAG	5 cut(s)	600, 897, 911, 1128, 1308
AfaI	GTAC	2 cut(s)	60, 1722
AfeI	AGCGCT	1 cut(s)	655
AflIII	ACRYGT	1 cut(s)	2106
AjnI	CCWGG	1 cut(s)	848
AjuI	GAANNNNNNNTTGG	2 cut(s)	378, 410
Alw21I	GWGCWC	2 cut(s)	1231, 2029
Alw26I	GTCTC	4 cut(s)	37, 190, 627, 1368
AlwI	GGATC	1 cut(s)	1539
Aor51HI	AGCGCT	1 cut(s)	655
AoxI	GGCC	1 cut(s)	1566
ApeKI	GCWGC	4 cut(s)	872, 1038, 1457, 1760
ApoI	RAATTY	3 cut(s)	1138, 1366, 1634
ArsI	GACNNNNNNTTYG	2 cut(s)	890, 922
Asp700I	GAANNNNTTC	2 cut(s)	390, 1776
AspLEI	GCGC	3 cut(s)	425, 656, 1019
AspS9I	GGNCC	2 cut(s)	1566, 1897
AsuHPI	GGTGA	5 cut(s)	385, 647, 656, 1837, 1878
AvaII	GGWCC	1 cut(s)	1897
BanII	GRGCYC	1 cut(s)	2029
BauI	CACGAG	2 cut(s)	232, 2060
BbsI	GAAGAC	3 cut(s)	203, 345, 966
Bbv12I	GWGCWC	2 cut(s)	1231, 2029
BbvCI	CCTCAGC	1 cut(s)	1299
BbvI	GCAGC	4 cut(s)	859, 1050, 1469, 1747
BccI	CCATC	5 cut(s)	449, 626, 724, 1816, 1926
BciT130I	CCWGG	1 cut(s)	850
BclI	TGATCA	2 cut(s)	679, 1590
BcoDI	GTCTC	4 cut(s)	37, 190, 627, 1368
BfaI	CTAG	4 cut(s)	779, 1328, 1442, 1757
BfoI	RGCGCY	2 cut(s)	426, 657
BglII	AGATCT	3 cut(s)	97, 1240, 1432
BisI	GCNGC	4 cut(s)	873, 1039, 1458, 1761
BlsI	GCNGC	4 cut(s)	874, 1040, 1459, 1762
Bme1390I	CCNGG	1 cut(s)	850
Bme18I	GGWCC	1 cut(s)	1897
BmgT120I	GGNCC	2 cut(s)	1566, 1897
BmrFI	CCNGG	1 cut(s)	850
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	5 cut(s)	693, 829, 1198, 1204, 1412
BmuI	ACTGGG	1 cut(s)	120
BpiI	GAAGAC	3 cut(s)	203, 345, 966
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
BpmI	CTGGAG	4 cut(s)	389, 624, 832, 902
Bpu10I	CCTNAGC	4 cut(s)	63, 723, 1008, 1299
BpuEI	CTTGAG	5 cut(s)	728, 758, 878, 1430, 1441
Bse1I	ACTGG	3 cut(s)	115, 1749, 1855
Bse3DI	GCAATG	2 cut(s)	1048, 1876
BseBI	CCWGG	1 cut(s)	850
BseGI	GGATG	5 cut(s)	589, 708, 814, 1219, 1525
BseMI	GCAATG	2 cut(s)	1048, 1876
BseMII	CTCAG	9 cut(s)	54, 180, 315, 641, 792, 1125, 1290, 1443, 1593
BseNI	ACTGG	3 cut(s)	115, 1749, 1855
BseRI	GAGGAG	1 cut(s)	1982
BseXI	GCAGC	4 cut(s)	859, 1050, 1469, 1747
BseYI	CCCAGC	1 cut(s)	2097
BsgI	GTGCAG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	1568
BsiHKAI	GWGCWC	2 cut(s)	1231, 2029
BslFI	GGGAC	1 cut(s)	1439
BsmAI	GTCTC	4 cut(s)	37, 190, 627, 1368
BsmFI	GGGAC	1 cut(s)	1439
BsmI	GAATGC	2 cut(s)	1019, 1909
BsnI	GGCC	1 cut(s)	1568
Bsp1286I	GDGCHC	2 cut(s)	1231, 2029
BspACI	CCGC	3 cut(s)	955, 1211, 1704
BspANI	GGCC	1 cut(s)	1568
BspCNI	CTCAG	9 cut(s)	55, 181, 316, 642, 793, 1126, 1291, 1442, 1594
BspHI	TCATGA	2 cut(s)	432, 1734
BspPI	GGATC	1 cut(s)	1539
BspQI	GCTCTTC	1 cut(s)	279
BsrDI	GCAATG	2 cut(s)	1048, 1876
BsrI	ACTGG	3 cut(s)	115, 1749, 1855
BssSI	CACGAG	2 cut(s)	232, 2060
Bst2BI	CACGAG	2 cut(s)	232, 2060
Bst2UI	CCWGG	1 cut(s)	850
Bst4CI	ACNGT	3 cut(s)	31, 792, 1504
Bst6I	CTCTTC	2 cut(s)	279, 1575
BstAPI	GCANNNNNTGC	2 cut(s)	869, 1052
BstC8I	GCNNGC	2 cut(s)	145, 1680
BstF5I	GGATG	5 cut(s)	589, 708, 814, 1219, 1525
BstH2I	RGCGCY	2 cut(s)	426, 657
BstHHI	GCGC	3 cut(s)	425, 656, 1019
BstMAI	GTCTC	4 cut(s)	37, 190, 627, 1368
BstMWI	GCNNNNNNNGC	6 cut(s)	112, 329, 869, 1052, 1457, 1466
BstNI	CCWGG	1 cut(s)	850
BstNSI	RCATGY	2 cut(s)	1451, 2110
BstSCI	CCNGG	1 cut(s)	848
BstV1I	GCAGC	4 cut(s)	859, 1050, 1469, 1747
BstV2I	GAAGAC	3 cut(s)	203, 345, 966
BstX2I	RGATCY	4 cut(s)	97, 1240, 1432, 1531
BstYI	RGATCY	4 cut(s)	97, 1240, 1432, 1531
BsuRI	GGCC	1 cut(s)	1568
BtgZI	GCGATG	1 cut(s)	1389
BtsCI	GGATG	5 cut(s)	589, 708, 814, 1219, 1525
BtsIMutI	CAGTG	2 cut(s)	624, 1131
Cac8I	GCNNGC	2 cut(s)	145, 1680
CciI	TCATGA	2 cut(s)	432, 1734
CfoI	GCGC	3 cut(s)	425, 656, 1019
Cfr13I	GGNCC	2 cut(s)	1566, 1897
Csp6I	GTAC	2 cut(s)	59, 1721
CspCI	CAANNNNNGTGG	2 cut(s)	922, 957
CviAII	CATG	9 cut(s)	20, 433, 452, 820, 1448, 1594, 1735, 1750, 2107
CviQI	GTAC	2 cut(s)	59, 1721
Eam1104I	CTCTTC	2 cut(s)	279, 1575
EarI	CTCTTC	2 cut(s)	279, 1575
Ecl136II	GAGCTC	1 cut(s)	2027
Eco24I	GRGCYC	1 cut(s)	2029
Eco32I	GATATC	2 cut(s)	438, 1714
Eco47I	GGWCC	1 cut(s)	1897
Eco47III	AGCGCT	1 cut(s)	655
Eco53kI	GAGCTC	1 cut(s)	2027
Eco57I	CTGAAG	5 cut(s)	600, 897, 911, 1128, 1308
EcoICRI	GAGCTC	1 cut(s)	2027
EcoRI	GAATTC	1 cut(s)	1138
EcoRII	CCWGG	1 cut(s)	848
EcoRV	GATATC	2 cut(s)	438, 1714
EcoT38I	GRGCYC	1 cut(s)	2029
FaeI	CATG	9 cut(s)	23, 436, 455, 823, 1451, 1597, 1738, 1753, 2110
FalI	AAGNNNNNCTT	4 cut(s)	931, 963, 1472, 1504
FaqI	GGGAC	1 cut(s)	1439
FatI	CATG	9 cut(s)	19, 432, 451, 819, 1447, 1593, 1734, 1749, 2106
FauI	CCCGC	1 cut(s)	948
FbaI	TGATCA	2 cut(s)	679, 1590
FblI	GTMKAC	2 cut(s)	816, 1930
Fnu4HI	GCNGC	4 cut(s)	873, 1039, 1458, 1761
FokI	GGATG	5 cut(s)	596, 715, 821, 1226, 1532
FriOI	GRGCYC	1 cut(s)	2029
Fsp4HI	GCNGC	4 cut(s)	873, 1039, 1458, 1761
FspBI	CTAG	4 cut(s)	779, 1328, 1442, 1757
GlaI	GCGC	3 cut(s)	424, 655, 1018
GluI	GCNGC	4 cut(s)	873, 1039, 1458, 1761
GsaI	CCCAGC	1 cut(s)	2101
GsuI	CTGGAG	4 cut(s)	389, 624, 832, 902
HaeII	RGCGCY	2 cut(s)	426, 657
HaeIII	GGCC	1 cut(s)	1568
HhaI	GCGC	3 cut(s)	425, 656, 1019
Hin1II	CATG	9 cut(s)	23, 436, 455, 823, 1451, 1597, 1738, 1753, 2110
Hin6I	GCGC	3 cut(s)	423, 654, 1017
HinP1I	GCGC	3 cut(s)	423, 654, 1017
HincII	GTYRAC	1 cut(s)	1621
HindII	GTYRAC	1 cut(s)	1621
HindIII	AAGCTT	4 cut(s)	85, 462, 977, 1028
HphI	GGTGA	5 cut(s)	385, 647, 656, 1837, 1878
Hpy166II	GTNNAC	3 cut(s)	817, 1621, 1931
Hpy8I	GTNNAC	3 cut(s)	817, 1621, 1931
Hpy99I	CGWCG	1 cut(s)	2080
HpyAV	CCTTC	7 cut(s)	300, 322, 473, 1073, 1546, 1652, 1954
HpyCH4III	ACNGT	3 cut(s)	31, 792, 1504
HpyCH4IV	ACGT	3 cut(s)	893, 997, 1249
HpyF10VI	GCNNNNNNNGC	6 cut(s)	112, 329, 869, 1052, 1457, 1466
HpySE526I	ACGT	3 cut(s)	893, 997, 1249
Hsp92II	CATG	9 cut(s)	23, 436, 455, 823, 1451, 1597, 1738, 1753, 2110
HspAI	GCGC	3 cut(s)	423, 654, 1017
Ksp22I	TGATCA	2 cut(s)	679, 1590
LguI	GCTCTTC	1 cut(s)	279
LmnI	GCTCC	3 cut(s)	1169, 1345, 2024
Lsp1109I	GCAGC	4 cut(s)	859, 1050, 1469, 1747
LweI	GCATC	5 cut(s)	693, 829, 1198, 1204, 1412
MaeI	CTAG	4 cut(s)	779, 1328, 1442, 1757
MaeII	ACGT	3 cut(s)	893, 997, 1249
MaeIII	GTNAC	1 cut(s)	829
MflI	RGATCY	4 cut(s)	97, 1240, 1432, 1531
MhlI	GDGCHC	2 cut(s)	1231, 2029
MlyI	GAGTC	3 cut(s)	260, 1421, 1613
MmeI	TCCRAC	3 cut(s)	1822, 1875, 2002
MroXI	GAANNNNTTC	2 cut(s)	390, 1776
MseI	TTAA	9 cut(s)	518, 698, 885, 951, 1085, 1148, 1641, 1955, 2069
MspA1I	CMGCKG	1 cut(s)	1460
MspR9I	CCNGG	1 cut(s)	850
Mva1269I	GAATGC	2 cut(s)	1019, 1909
MvaI	CCWGG	1 cut(s)	850
MwoI	GCNNNNNNNGC	6 cut(s)	112, 329, 869, 1052, 1457, 1466
NlaIII	CATG	9 cut(s)	23, 436, 455, 823, 1451, 1597, 1738, 1753, 2110
NmeAIII	GCCGAG	1 cut(s)	207
NspI	RCATGY	2 cut(s)	1451, 2110
PagI	TCATGA	2 cut(s)	432, 1734
PciI	ACATGT	1 cut(s)	2106
PciSI	GCTCTTC	1 cut(s)	279
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PctI	GAATGC	2 cut(s)	1019, 1909
PdmI	GAANNNNTTC	2 cut(s)	390, 1776
PfeI	GAWTC	9 cut(s)	124, 317, 386, 415, 755, 922, 986, 1195, 1310
PkrI	GCNGC	4 cut(s)	874, 1040, 1459, 1762
PleI	GAGTC	3 cut(s)	259, 1421, 1612
PpsI	GAGTC	3 cut(s)	259, 1421, 1612
PscI	ACATGT	1 cut(s)	2106
Psp124BI	GAGCTC	1 cut(s)	2029
Psp1406I	AACGTT	1 cut(s)	997
Psp6I	CCWGG	1 cut(s)	848
PspFI	CCCAGC	1 cut(s)	2097
PspGI	CCWGG	1 cut(s)	848
PspPI	GGNCC	2 cut(s)	1566, 1897
PsuI	RGATCY	4 cut(s)	97, 1240, 1432, 1531
PvuII	CAGCTG	1 cut(s)	1460
RsaI	GTAC	2 cut(s)	60, 1722
RsaNI	GTAC	2 cut(s)	59, 1721
SacI	GAGCTC	1 cut(s)	2029
SapI	GCTCTTC	1 cut(s)	279
SaqAI	TTAA	9 cut(s)	518, 698, 885, 951, 1085, 1148, 1641, 1955, 2069
SatI	GCNGC	4 cut(s)	873, 1039, 1458, 1761
Sau96I	GGNCC	2 cut(s)	1566, 1897
SchI	GAGTC	3 cut(s)	260, 1421, 1613
ScrFI	CCNGG	1 cut(s)	850
SduI	GDGCHC	2 cut(s)	1231, 2029
SfaNI	GCATC	5 cut(s)	693, 829, 1198, 1204, 1412
SinI	GGWCC	1 cut(s)	1897
SmlI	CTYRAG	5 cut(s)	707, 737, 857, 1409, 1420
SmoI	CTYRAG	5 cut(s)	707, 737, 857, 1409, 1420
SsiI	CCGC	3 cut(s)	955, 1211, 1704
SspI	AATATT	1 cut(s)	1670
SspMI	CTAG	4 cut(s)	779, 1328, 1442, 1757
SstI	GAGCTC	1 cut(s)	2029
StyD4I	CCNGG	1 cut(s)	848
TaaI	ACNGT	3 cut(s)	31, 792, 1504
TaiI	ACGT	3 cut(s)	896, 1000, 1252
TaqI	TCGA	4 cut(s)	39, 293, 1527, 2078
TfiI	GAWTC	9 cut(s)	124, 317, 386, 415, 755, 922, 986, 1195, 1310
Tru1I	TTAA	9 cut(s)	518, 698, 885, 951, 1085, 1148, 1641, 1955, 2069
Tru9I	TTAA	9 cut(s)	518, 698, 885, 951, 1085, 1148, 1641, 1955, 2069
TscAI	CASTG	2 cut(s)	624, 1138
TseI	GCWGC	4 cut(s)	872, 1038, 1457, 1760
TspGWI	ACGGA	2 cut(s)	29, 432
TspRI	CASTG	2 cut(s)	624, 1138
VpaK11BI	GGWCC	1 cut(s)	1897
XapI	RAATTY	3 cut(s)	1138, 1366, 1634
XceI	RCATGY	2 cut(s)	1451, 2110
XmiI	GTMKAC	2 cut(s)	816, 1930
XmnI	GAANNNNTTC	2 cut(s)	390, 1776
XspI	CTAG	4 cut(s)	779, 1328, 1442, 1757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.