RLG00000013484

WPP domain-interacting tail-anchored protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002372
Physical Location & Seq
Forward (+)
32248732 .. 32249653
922 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013484

Sequence Viewer

Length: 387 bp
ATGGATTATGATGCTACTCATGAAGCAAGTGATTTTGGCAACAATGTTAATATTGACGTCCCAGTAGTAGAATCAAATGGAGTTGATAGTCTTGAAAAGGTTTCATTTGATGGCATGGTTATAGGAGAATTACAAAATGTGAGGGAGGTTATAACTGGAGTTGAGTTGGATCTAGCATGTGCTTCTGAGAAGTTGCTTAATTTAATTGGTTTTATGATGCATGTGGCAACCAAGGAGAGTGGCTTTGATGCCTTTACATCCAAGGAAGAGCAGACAATAGTTGGTTCTGTCGAGAAGGCTCTAGAGTACACTCTCTTATCTGGAATATTAGGTGAATTGGATAAGGTCATAGATTTACTTCAAATGGAGATTACGGCTGCTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0012505 GO:0016020 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

13.87

Weight (kDa)

4.07

Isoelectric Point (pI)

35.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WIT1_2_N PF26581 45 - 127 7.8e-26 WIT1/2, N-terminal helical bundle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 152
AatII GACGTC 1 cut(s) 60
AclWI GGATC 1 cut(s) 177
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 1 cut(s) 308
AgsI TTSAA 2 cut(s) 95, 362
AlwI GGATC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 377
AsuHPI GGTGA 1 cut(s) 344
BbvI GCAGC 1 cut(s) 364
BccI CCATC 1 cut(s) 104
BfaI CTAG 2 cut(s) 173, 302
BisI GCNGC 1 cut(s) 378
BlsI GCNGC 1 cut(s) 379
BmrI ACTGGG 1 cut(s) 56
BmsI GCATC 2 cut(s) 207, 238
BmuI ACTGGG 1 cut(s) 56
BpmI CTGGAG 1 cut(s) 177
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 231, 261
Bse1I ACTGG 2 cut(s) 62, 160
BseDI CCNNGG 2 cut(s) 231, 261
BseGI GGATG 1 cut(s) 257
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 2 cut(s) 62, 160
BseXI GCAGC 1 cut(s) 364
BslFI GGGAC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 44
Bsp143I GATC 1 cut(s) 169
BspCNI CTCAG 1 cut(s) 178
BspHI TCATGA 1 cut(s) 19
BspPI GGATC 1 cut(s) 177
BspQI GCTCTTC 1 cut(s) 261
BsrI ACTGG 2 cut(s) 62, 160
BssECI CCNNGG 2 cut(s) 231, 261
BssMI GATC 1 cut(s) 169
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 2 cut(s) 231, 261
Bst6I CTCTTC 1 cut(s) 261
BstACI GRCGYC 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 257
BstKTI GATC 1 cut(s) 172
BstMBI GATC 1 cut(s) 169
BstNSI RCATGY 2 cut(s) 180, 224
BstV1I GCAGC 1 cut(s) 364
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BtsCI GGATG 1 cut(s) 257
CciI TCATGA 1 cut(s) 19
Csp6I GTAC 1 cut(s) 307
CspCI CAANNNNNGTGG 2 cut(s) 220, 255
CviAII CATG 4 cut(s) 20, 115, 177, 221
CviJI RGCY 3 cut(s) 243, 299, 377
CviKI_1 RGCY 3 cut(s) 243, 299, 377
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 1 cut(s) 186
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Eco130I CCWWGG 2 cut(s) 231, 261
EcoT14I CCWWGG 2 cut(s) 231, 261
EcoT22I ATGCAT 1 cut(s) 222
ErhI CCWWGG 2 cut(s) 231, 261
FaeI CATG 4 cut(s) 23, 118, 180, 224
FaiI YATR 9 cut(s) 9, 21, 116, 122, 152, 178, 215, 222, 350
FaqI GGGAC 1 cut(s) 44
FatI CATG 4 cut(s) 19, 114, 176, 220
Fnu4HI GCNGC 1 cut(s) 378
FokI GGATG 1 cut(s) 244
Fsp4HI GCNGC 1 cut(s) 378
FspBI CTAG 2 cut(s) 173, 302
GluI GCNGC 1 cut(s) 378
GsuI CTGGAG 1 cut(s) 177
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 4 cut(s) 23, 118, 180, 224
HinfI GANTC 1 cut(s) 71
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 1 cut(s) 309
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 5 cut(s) 20, 92, 292, 302, 321
Hpy8I GTNNAC 1 cut(s) 309
HpyAV CCTTC 1 cut(s) 289
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 220
HpyF3I CTNAG 1 cut(s) 186
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 4 cut(s) 23, 118, 180, 224
Kzo9I GATC 1 cut(s) 169
LguI GCTCTTC 1 cut(s) 261
LpnPI CCDG 3 cut(s) 75, 141, 306
Lsp1109I GCAGC 1 cut(s) 364
LweI GCATC 2 cut(s) 207, 238
MaeI CTAG 2 cut(s) 173, 302
MaeII ACGT 1 cut(s) 57
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 1 cut(s) 278
MflI RGATCY 1 cut(s) 169
MluCI AATT 4 cut(s) 128, 199, 204, 335
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 2 cut(s) 135, 139
Mph1103I ATGCAT 1 cut(s) 222
MseI TTAA 3 cut(s) 48, 198, 203
NdeII GATC 1 cut(s) 169
NlaIII CATG 4 cut(s) 23, 118, 180, 224
NsiI ATGCAT 1 cut(s) 222
NspI RCATGY 2 cut(s) 180, 224
PagI TCATGA 1 cut(s) 19
PciSI GCTCTTC 1 cut(s) 261
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 379
PsiI TTATAA 1 cut(s) 152
PsuI RGATCY 1 cut(s) 169
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SapI GCTCTTC 1 cut(s) 261
SaqAI TTAA 3 cut(s) 48, 198, 203
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 1 cut(s) 169
SetI ASST 5 cut(s) 60, 102, 150, 334, 348
SfaNI GCATC 2 cut(s) 207, 238
Sse9I AATT 4 cut(s) 128, 199, 204, 335
SspI AATATT 2 cut(s) 52, 327
SspMI CTAG 2 cut(s) 173, 302
StyI CCWWGG 2 cut(s) 231, 261
TaiI ACGT 1 cut(s) 60
TaqI TCGA 1 cut(s) 291
TasI AATT 4 cut(s) 128, 199, 204, 335
TatI WGTACW 1 cut(s) 306
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 3 cut(s) 48, 198, 203
Tru9I TTAA 3 cut(s) 48, 198, 203
TseI GCWGC 1 cut(s) 377
TspDTI ATGAA 2 cut(s) 36, 93
XbaI TCTAGA 1 cut(s) 301
XceI RCATGY 2 cut(s) 180, 224
XspI CTAG 2 cut(s) 173, 302
ZraI GACGTC 1 cut(s) 58
Zsp2I ATGCAT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.