Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022221.1

Orthogroup ID

OG0002372

Physical Location & Seq

Genomic Coordinates Reverse (-)

10284 .. 14387

Gene Structure 4104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022221.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

atggattatgatgctactcatgaagcaagtgattttggcaacgatgttaatattgacgtcccagtagtagaatcaattagagttgatagtcttgaaaaggtttcatttgatggcatggttatagaagaattacaaaatctgggcgaggttataactggagttgagttggatctagcatgtgcttctgagaagttgcttaatttaattggttttatgatgcatgtggcaaccaaggagagtgactttgatgcctttatatccaatgaagagcagacaatagttggttctgtcgagaaggctctagagttcactctcttgtctggaatattagactctgaggtaggtgaattggataaggtcatagctttacttcaaatggaaattacggctgcgcaagagctattatctttatatacatacttaggagaaacatttacagtaatagaagaaaagctgcaggattctgagcagtctttgaagcagttgcaagaacaaatctctgaaatcaggatgcaatctctgaagttccagaggaccctttcatgctacgacggagaagaaaatttgcctcccacgcgcacagcctgcaccggcctccatcttctccggcggccttcacagcccaccaggccgcgcctcttgcaacgtagatcacccacccagtgtgccctacgctatgcccaacccacttctgcacatcactgccctgacctgcacacaccactgcccagtgtacgctccaccattgctcctcgcccaagacctgagtcagccacccatctgcaaaccagaaggaaggagaagagagaaaaggaagaagaagaaagaaagaaaaagaaaaagaaaaaaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0012505 GO:0016020 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

284

Amino Acids

32.19

Weight (kDa)

5.35

Isoelectric Point (pI)

72.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11390
fragaria_vesca	FvH4_2g13612 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070
malus_domestica	MD09G1077300.v1.1 MD17G1067700.v1.1
prunus_persica	Prupe.3G246700_v2.0.a1
pyrus_communis	pycom09g00440 pycom17g06810
rosa_chinensis	RchiOBHm_Chr2g0164391 RchiOBHm_Chr6g0275231
rosa_laevigata	RLG00000013484 RLG00000021457
rosa_multiflora	Rmu_sc0009487.1_g000004 Rmu_sc0010331.1_g000002 Rmu_sc0015626.1_g000002 Rmu_sc0022221.1_g000006 Rmu_ssc0000041.1_g000026
rosa_roxburghii	Rroxscaffold_2G00086600 Rroxscaffold_7G00193530
rosa_rugosa	Rorug02G0508300 Rorug06G0090400
rosa_samantha	Rh2AG576300 Rh2BG587300 Rh2CG558100 Rh2DG597000 Rh6AG203700 Rh6BG206600 Rh6CG209200 Rh6DG199200
rosa_wichuraiana	Rw2G047730 Rw2G047830 Rw6G017690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	152
AatII	GACGTC	1 cut(s)	60
Acc16I	TGCGCA	1 cut(s)	393
Acc36I	ACCTGC	1 cut(s)	720
AccII	CGCG	2 cut(s)	577, 634
AciI	CCGC	2 cut(s)	610, 632
AclWI	GGATC	1 cut(s)	177
AcsI	RAATTY	1 cut(s)	562
AcuI	CTGAAG	1 cut(s)	542
AcyI	GRCGYC	1 cut(s)	57
AdeI	CACNNNGTG	1 cut(s)	663
AfaI	GTAC	1 cut(s)	735
AgsI	TTSAA	3 cut(s)	95, 374, 478
AjnI	CCWGG	1 cut(s)	626
AluBI	AGCT	3 cut(s)	365, 400, 454
AluI	AGCT	3 cut(s)	365, 400, 454
AlwI	GGATC	1 cut(s)	177
AoxI	GGCC	3 cut(s)	592, 611, 629
ApeKI	GCWGC	2 cut(s)	389, 454
ApoI	RAATTY	1 cut(s)	562
AspLEI	GCGC	3 cut(s)	394, 579, 636
AspS9I	GGNCC	1 cut(s)	534
AsuHPI	GGTGA	2 cut(s)	356, 645
AvaII	GGWCC	1 cut(s)	534
BaeGI	GKGCMC	1 cut(s)	670
BbvI	GCAGC	2 cut(s)	376, 441
BccI	CCATC	3 cut(s)	104, 606, 786
BceAI	ACGGC	1 cut(s)	402
BciT130I	CCWGG	1 cut(s)	628
BfaI	CTAG	2 cut(s)	173, 302
BfmI	CTRYAG	1 cut(s)	455
BfuAI	ACCTGC	1 cut(s)	720
BglI	GCCNNNNNGGC	1 cut(s)	628
BisI	GCNGC	4 cut(s)	390, 455, 611, 632
BlsI	GCNGC	4 cut(s)	391, 456, 612, 633
Bme1390I	CCNGG	1 cut(s)	628
Bme18I	GGWCC	1 cut(s)	534
BmgT120I	GGNCC	1 cut(s)	534
BmiI	GGNNCC	1 cut(s)	536
BmrFI	CCNGG	1 cut(s)	628
BmrI	ACTGGG	3 cut(s)	56, 655, 723
BmsI	GCATC	3 cut(s)	207, 238, 501
BmuI	ACTGGG	3 cut(s)	56, 655, 723
BoxI	GACNNNNGTC	1 cut(s)	766
BpmI	CTGGAG	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	231
BsaXI	ACNNNNNCTCC	2 cut(s)	733, 763
Bse118I	RCCGGY	1 cut(s)	590
Bse1I	ACTGG	4 cut(s)	62, 160, 661, 729
Bse3DI	GCAATG	1 cut(s)	744
BseBI	CCWGG	1 cut(s)	628
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	516
BseMI	GCAATG	1 cut(s)	744
BseMII	CTCAG	4 cut(s)	177, 327, 456, 756
BseNI	ACTGG	4 cut(s)	62, 160, 661, 729
BseRI	GAGGAG	1 cut(s)	741
BseSI	GKGCMC	1 cut(s)	670
BseXI	GCAGC	2 cut(s)	376, 441
BsgI	GTGCAG	3 cut(s)	571, 678, 698
Bsh1236I	CGCG	2 cut(s)	577, 634
BshFI	GGCC	3 cut(s)	594, 613, 631
BsiSI	CCGG	2 cut(s)	591, 607
BslFI	GGGAC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	44
BsnI	GGCC	3 cut(s)	594, 613, 631
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp143I	GATC	2 cut(s)	169, 650
BspACI	CCGC	2 cut(s)	610, 632
BspANI	GGCC	3 cut(s)	594, 613, 631
BspCNI	CTCAG	4 cut(s)	178, 328, 457, 757
BspFNI	CGCG	2 cut(s)	577, 634
BspHI	TCATGA	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	536
BspMAI	CTGCAG	1 cut(s)	459
BspMI	ACCTGC	1 cut(s)	720
BspPI	GGATC	1 cut(s)	177
BspQI	GCTCTTC	1 cut(s)	261
BsrDI	GCAATG	1 cut(s)	744
BsrFI	RCCGGY	1 cut(s)	590
BsrI	ACTGG	4 cut(s)	62, 160, 661, 729
BssAI	RCCGGY	1 cut(s)	590
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	2 cut(s)	169, 650
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	628
Bst4CI	ACNGT	1 cut(s)	439
Bst6I	CTCTTC	2 cut(s)	261, 797
BstACI	GRCGYC	1 cut(s)	57
BstAPI	GCANNNNNTGC	1 cut(s)	585
BstC8I	GCNNGC	1 cut(s)	586
BstDEI	CTNAG	5 cut(s)	186, 336, 421, 465, 765
BstF5I	GGATG	1 cut(s)	516
BstFNI	CGCG	2 cut(s)	577, 634
BstHHI	GCGC	3 cut(s)	394, 579, 636
BstKTI	GATC	2 cut(s)	172, 653
BstMBI	GATC	2 cut(s)	169, 650
BstMWI	GCNNNNNNNGC	5 cut(s)	574, 585, 619, 628, 640
BstNI	CCWGG	1 cut(s)	628
BstNSI	RCATGY	2 cut(s)	180, 224
BstPAI	GACNNNNGTC	1 cut(s)	766
BstSCI	CCNGG	1 cut(s)	626
BstSFI	CTRYAG	1 cut(s)	455
BstSLI	GKGCMC	1 cut(s)	670
BstUI	CGCG	2 cut(s)	577, 634
BstV1I	GCAGC	2 cut(s)	376, 441
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BsuRI	GGCC	3 cut(s)	594, 613, 631
BtsCI	GGATG	1 cut(s)	516
BtsI	GCAGTG	2 cut(s)	700, 722
BtsIMutI	CAGTG	4 cut(s)	668, 700, 722, 736
BveI	ACCTGC	1 cut(s)	720
Cac8I	GCNNGC	1 cut(s)	586
CciI	TCATGA	1 cut(s)	19
CfoI	GCGC	3 cut(s)	394, 579, 636
Cfr10I	RCCGGY	1 cut(s)	590
Cfr13I	GGNCC	1 cut(s)	534
Csp6I	GTAC	1 cut(s)	734
CviAII	CATG	5 cut(s)	20, 115, 177, 221, 543
CviQI	GTAC	1 cut(s)	734
DdeI	CTNAG	5 cut(s)	186, 336, 421, 465, 765
DpnI	GATC	2 cut(s)	171, 652
DpnII	GATC	2 cut(s)	169, 650
DraIII	CACNNNGTG	1 cut(s)	663
Eam1104I	CTCTTC	2 cut(s)	261, 797
EarI	CTCTTC	2 cut(s)	261, 797
Eco130I	CCWWGG	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	534
Eco57I	CTGAAG	1 cut(s)	542
EcoO109I	RGGNCCY	1 cut(s)	534
EcoRII	CCWGG	1 cut(s)	626
EcoT14I	CCWWGG	1 cut(s)	231
EcoT22I	ATGCAT	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	5 cut(s)	23, 118, 180, 224, 546
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	5 cut(s)	19, 114, 176, 220, 542
Fnu4HI	GCNGC	4 cut(s)	390, 455, 611, 632
FokI	GGATG	1 cut(s)	523
Fsp4HI	GCNGC	4 cut(s)	390, 455, 611, 632
FspBI	CTAG	2 cut(s)	173, 302
FspI	TGCGCA	1 cut(s)	393
GlaI	GCGC	3 cut(s)	393, 578, 635
GluI	GCNGC	4 cut(s)	390, 455, 611, 632
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	3 cut(s)	594, 613, 631
HapII	CCGG	2 cut(s)	591, 607
HhaI	GCGC	3 cut(s)	394, 579, 636
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	5 cut(s)	23, 118, 180, 224, 546
Hin6I	GCGC	3 cut(s)	392, 577, 634
HinP1I	GCGC	3 cut(s)	392, 577, 634
HinfI	GANTC	4 cut(s)	71, 332, 461, 767
HpaII	CCGG	2 cut(s)	591, 607
HphI	GGTGA	2 cut(s)	356, 645
Hpy166II	GTNNAC	2 cut(s)	309, 734
Hpy188I	TCNGA	5 cut(s)	187, 337, 466, 502, 522
Hpy188III	TCNNGA	7 cut(s)	20, 92, 292, 302, 321, 508, 529
Hpy8I	GTNNAC	2 cut(s)	309, 734
Hpy99I	CGWCG	1 cut(s)	554
HpyAV	CCTTC	4 cut(s)	289, 624, 786, 790
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4IV	ACGT	2 cut(s)	57, 646
HpyCH4V	TGCA	9 cut(s)	220, 457, 487, 514, 588, 643, 695, 715, 784
HpyF10VI	GCNNNNNNNGC	5 cut(s)	574, 585, 619, 628, 640
HpyF3I	CTNAG	5 cut(s)	186, 336, 421, 465, 765
HpySE526I	ACGT	2 cut(s)	57, 646
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	5 cut(s)	23, 118, 180, 224, 546
HspAI	GCGC	3 cut(s)	392, 577, 634
Kzo9I	GATC	2 cut(s)	169, 650
LguI	GCTCTTC	1 cut(s)	261
LmnI	GCTCC	2 cut(s)	743, 754
Lsp1109I	GCAGC	2 cut(s)	376, 441
LweI	GCATC	3 cut(s)	207, 238, 501
MaeI	CTAG	2 cut(s)	173, 302
MaeII	ACGT	2 cut(s)	57, 646
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	2 cut(s)	171, 652
MboI	GATC	2 cut(s)	169, 650
MboII	GAAGA	9 cut(s)	137, 278, 458, 569, 593, 814, 827, 830, 833
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	1 cut(s)	670
MluCI	AATT	7 cut(s)	75, 128, 199, 204, 347, 381, 562
MlyI	GAGTC	2 cut(s)	326, 776
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	7 cut(s)	139, 331, 525, 579, 605, 647, 762
Mph1103I	ATGCAT	1 cut(s)	222
MseI	TTAA	3 cut(s)	48, 198, 203
MspI	CCGG	2 cut(s)	591, 607
MspR9I	CCNGG	1 cut(s)	628
MvaI	CCWGG	1 cut(s)	628
MvnI	CGCG	2 cut(s)	577, 634
MwoI	GCNNNNNNNGC	5 cut(s)	574, 585, 619, 628, 640
NdeII	GATC	2 cut(s)	169, 650
NlaIII	CATG	5 cut(s)	23, 118, 180, 224, 546
NlaIV	GGNNCC	1 cut(s)	536
NmuCI	GTSAC	1 cut(s)	239
NsbI	TGCGCA	1 cut(s)	393
NsiI	ATGCAT	1 cut(s)	222
NspI	RCATGY	2 cut(s)	180, 224
PagI	TCATGA	1 cut(s)	19
PciSI	GCTCTTC	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	71, 461
PkrI	GCNGC	4 cut(s)	391, 456, 612, 633
PleI	GAGTC	2 cut(s)	326, 775
PpsI	GAGTC	2 cut(s)	326, 775
PpuMI	RGGWCCY	1 cut(s)	534
PshAI	GACNNNNGTC	1 cut(s)	766
PsiI	TTATAA	1 cut(s)	152
Psp5II	RGGWCCY	1 cut(s)	534
Psp6I	CCWGG	1 cut(s)	626
PspGI	CCWGG	1 cut(s)	626
PspN4I	GGNNCC	1 cut(s)	536
PspPI	GGNCC	1 cut(s)	534
PspPPI	RGGWCCY	1 cut(s)	534
PstI	CTGCAG	1 cut(s)	459
PsuI	RGATCY	1 cut(s)	169
RsaI	GTAC	1 cut(s)	735
RsaNI	GTAC	1 cut(s)	734
SapI	GCTCTTC	1 cut(s)	261
SaqAI	TTAA	3 cut(s)	48, 198, 203
SatI	GCNGC	4 cut(s)	390, 455, 611, 632
Sau3AI	GATC	2 cut(s)	169, 650
Sau96I	GGNCC	1 cut(s)	534
SchI	GAGTC	2 cut(s)	326, 776
ScrFI	CCNGG	1 cut(s)	628
SduI	GDGCHC	1 cut(s)	670
SfaNI	GCATC	3 cut(s)	207, 238, 501
SfcI	CTRYAG	1 cut(s)	455
SinI	GGWCC	1 cut(s)	534
Sse9I	AATT	7 cut(s)	75, 128, 199, 204, 347, 381, 562
SsiI	CCGC	2 cut(s)	610, 632
SspI	AATATT	2 cut(s)	52, 327
SspMI	CTAG	2 cut(s)	173, 302
StyD4I	CCNGG	1 cut(s)	626
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	439
TaiI	ACGT	2 cut(s)	60, 649
TaqI	TCGA	1 cut(s)	291
TasI	AATT	7 cut(s)	75, 128, 199, 204, 347, 381, 562
TauI	GCSGC	2 cut(s)	613, 634
TfiI	GAWTC	2 cut(s)	71, 461
Tru1I	TTAA	3 cut(s)	48, 198, 203
Tru9I	TTAA	3 cut(s)	48, 198, 203
TscAI	CASTG	4 cut(s)	668, 707, 729, 736
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	2 cut(s)	389, 454
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	4 cut(s)	36, 93, 279, 531
TspGWI	ACGGA	1 cut(s)	567
TspRI	CASTG	4 cut(s)	668, 707, 729, 736
VpaK11BI	GGWCC	1 cut(s)	534
XapI	RAATTY	1 cut(s)	562
XbaI	TCTAGA	1 cut(s)	301
XceI	RCATGY	2 cut(s)	180, 224
XspI	CTAG	2 cut(s)	173, 302
ZraI	GACGTC	1 cut(s)	58
Zsp2I	ATGCAT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.