Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015626.1

Orthogroup ID

OG0002372

Physical Location & Seq

Genomic Coordinates Forward (+)

3858 .. 4442

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015626.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atggattatgatggtactcatgaagcaagtgtttctggcaatgatgttaatgttgaggtcccggtagtggagtcgaagagagtggagggtcttgaaagggtctcatctggtgtggttattggagaattacaaaatgtggaggaggttataatcggagttgaattggatctagcacgcgcttccgagaagttgcttaatttaaaaggttttatgatgcatgtgggaaccaaggagagtgactttgaggcctttatatccaaggaagagcagacatcagttgattctgctgagagggctctggagttcactctcttatctggaattttagactctgaggtgagtgaattggataagctcatcgctttacttcaaatggagatcacggctgcccaggagctactatcttcatacacatacttgggagaaacatttgcagtaatggaagaaaagctgcaggattctgaacaatctttggagcagttgcaagaacaggtctctgaaatccggatgcaatctctgaagttccagaggaccttttcatgctccgatggagaagaaaatcgtaagctaccagtgttattttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0012505 GO:0016020 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

194

Amino Acids

21.65

Weight (kDa)

4.29

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11390
fragaria_vesca	FvH4_2g13612 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070
malus_domestica	MD09G1077300.v1.1 MD17G1067700.v1.1
prunus_persica	Prupe.3G246700_v2.0.a1
pyrus_communis	pycom09g00440 pycom17g06810
rosa_chinensis	RchiOBHm_Chr2g0164391 RchiOBHm_Chr6g0275231
rosa_laevigata	RLG00000013484 RLG00000021457
rosa_multiflora	Rmu_sc0009487.1_g000004 Rmu_sc0010331.1_g000002 Rmu_sc0015626.1_g000002 Rmu_sc0022221.1_g000006 Rmu_ssc0000041.1_g000026
rosa_roxburghii	Rroxscaffold_2G00086600 Rroxscaffold_7G00193530
rosa_rugosa	Rorug02G0508300 Rorug06G0090400
rosa_samantha	Rh2AG576300 Rh2BG587300 Rh2CG558100 Rh2DG597000 Rh6AG203700 Rh6BG206600 Rh6CG209200 Rh6DG199200
rosa_wichuraiana	Rw2G047730 Rw2G047830 Rw6G017690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	149
AccII	CGCG	1 cut(s)	177
AccIII	TCCGGA	1 cut(s)	504
AclWI	GGATC	1 cut(s)	174
AcsI	RAATTY	1 cut(s)	321
AcuI	CTGAAG	1 cut(s)	539
AfaI	GTAC	1 cut(s)	16
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	3 cut(s)	95, 161, 371
AjnI	CCWGG	1 cut(s)	390
AluBI	AGCT	4 cut(s)	355, 397, 451, 568
AluI	AGCT	4 cut(s)	355, 397, 451, 568
Alw26I	GTCTC	2 cut(s)	106, 499
AlwI	GGATC	1 cut(s)	174
Aor13HI	TCCGGA	1 cut(s)	504
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	2 cut(s)	386, 451
ApoI	RAATTY	1 cut(s)	321
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	2 cut(s)	58, 531
AsuC2I	CCSGG	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	349
AvaII	GGWCC	2 cut(s)	58, 531
BanII	GRGCYC	1 cut(s)	298
BbvI	GCAGC	2 cut(s)	373, 438
BccI	CCATC	2 cut(s)	5, 542
BceAI	ACGGC	1 cut(s)	399
BciT130I	CCWGG	1 cut(s)	392
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	2 cut(s)	106, 499
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	452
BisI	GCNGC	2 cut(s)	387, 452
BlsI	GCNGC	2 cut(s)	388, 453
Bme1390I	CCNGG	2 cut(s)	62, 392
Bme18I	GGWCC	2 cut(s)	58, 531
BmgT120I	GGNCC	2 cut(s)	58, 531
BmiI	GGNNCC	2 cut(s)	60, 226
BmrFI	CCNGG	2 cut(s)	62, 392
BmsI	GCATC	2 cut(s)	204, 498
BpmI	CTGGAG	1 cut(s)	320
BpuMI	CCSGG	1 cut(s)	62
BsaI	GGTCTC	2 cut(s)	106, 499
BsaJI	CCNNGG	3 cut(s)	228, 258, 390
BsaWI	WCCGGW	1 cut(s)	504
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	572
Bse3DI	GCAATG	1 cut(s)	46
BseAI	TCCGGA	1 cut(s)	504
BseBI	CCWGG	1 cut(s)	392
BseDI	CCNNGG	3 cut(s)	228, 258, 390
BseGI	GGATG	1 cut(s)	513
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMI	GCAATG	1 cut(s)	46
BseMII	CTCAG	2 cut(s)	279, 324
BseNI	ACTGG	1 cut(s)	572
BseRI	GAGGAG	1 cut(s)	155
BseXI	GCAGC	2 cut(s)	373, 438
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	248
BsiSI	CCGG	2 cut(s)	62, 505
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	2 cut(s)	106, 499
BsmFI	GGGAC	1 cut(s)	44
BsnI	GGCC	1 cut(s)	248
Bso31I	GGTCTC	2 cut(s)	106, 499
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp13I	TCCGGA	1 cut(s)	504
Bsp143I	GATC	2 cut(s)	166, 378
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	2 cut(s)	280, 325
BspEI	TCCGGA	1 cut(s)	504
BspFNI	CGCG	1 cut(s)	177
BspHI	TCATGA	1 cut(s)	19
BspLI	GGNNCC	2 cut(s)	60, 226
BspMAI	CTGCAG	1 cut(s)	456
BspPI	GGATC	1 cut(s)	174
BspQI	GCTCTTC	1 cut(s)	258
BspTNI	GGTCTC	2 cut(s)	106, 499
BsrDI	GCAATG	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	572
BssECI	CCNNGG	3 cut(s)	228, 258, 390
BssMI	GATC	2 cut(s)	166, 378
BssT1I	CCWWGG	2 cut(s)	228, 258
Bst2UI	CCWGG	1 cut(s)	392
Bst6I	CTCTTC	2 cut(s)	71, 258
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	2 cut(s)	288, 333
BstF5I	GGATG	1 cut(s)	513
BstFNI	CGCG	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	2 cut(s)	169, 381
BstMAI	GTCTC	2 cut(s)	106, 499
BstMBI	GATC	2 cut(s)	166, 378
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNI	CCWGG	1 cut(s)	392
BstNSI	RCATGY	1 cut(s)	221
BstSCI	CCNGG	2 cut(s)	60, 390
BstSFI	CTRYAG	1 cut(s)	452
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	2 cut(s)	373, 438
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	248
BtgZI	GCGATG	1 cut(s)	343
BtsCI	GGATG	1 cut(s)	513
BtsIMutI	CAGTG	1 cut(s)	579
Cac8I	GCNNGC	1 cut(s)	175
CciI	TCATGA	1 cut(s)	19
CfoI	GCGC	1 cut(s)	179
Cfr13I	GGNCC	2 cut(s)	58, 531
Csp6I	GTAC	1 cut(s)	15
CviAII	CATG	3 cut(s)	20, 218, 540
CviJI	RGCY	7 cut(s)	248, 296, 355, 386, 397, 451, 568
CviKI_1	RGCY	7 cut(s)	248, 296, 355, 386, 397, 451, 568
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	2 cut(s)	288, 333
DpnI	GATC	2 cut(s)	168, 380
DpnII	GATC	2 cut(s)	166, 378
DraI	TTTAAA	1 cut(s)	201
Eam1104I	CTCTTC	2 cut(s)	71, 258
EarI	CTCTTC	2 cut(s)	71, 258
Eco130I	CCWWGG	2 cut(s)	228, 258
Eco147I	AGGCCT	1 cut(s)	248
Eco24I	GRGCYC	1 cut(s)	298
Eco31I	GGTCTC	2 cut(s)	106, 499
Eco47I	GGWCC	2 cut(s)	58, 531
Eco57I	CTGAAG	1 cut(s)	539
EcoO109I	RGGNCCY	2 cut(s)	58, 531
EcoRII	CCWGG	1 cut(s)	390
EcoT14I	CCWWGG	2 cut(s)	228, 258
EcoT22I	ATGCAT	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	2 cut(s)	228, 258
FaeI	CATG	3 cut(s)	23, 221, 543
FaiI	YATR	9 cut(s)	9, 21, 149, 212, 219, 254, 409, 415, 541
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	3 cut(s)	19, 217, 539
Fnu4HI	GCNGC	2 cut(s)	387, 452
FokI	GGATG	1 cut(s)	520
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	2 cut(s)	387, 452
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	2 cut(s)	387, 452
GsuI	CTGGAG	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	248
HapII	CCGG	2 cut(s)	62, 505
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	3 cut(s)	23, 221, 543
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HinfI	GANTC	4 cut(s)	71, 281, 329, 458
HpaII	CCGG	2 cut(s)	62, 505
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	1 cut(s)	306
Hpy188I	TCNGA	7 cut(s)	155, 184, 334, 463, 499, 519, 547
Hpy188III	TCNNGA	6 cut(s)	20, 92, 299, 318, 505, 526
Hpy8I	GTNNAC	1 cut(s)	306
HpyCH4V	TGCA	5 cut(s)	217, 434, 454, 484, 511
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	2 cut(s)	288, 333
Hsp92II	CATG	3 cut(s)	23, 221, 543
HspAI	GCGC	1 cut(s)	177
Kpn2I	TCCGGA	1 cut(s)	504
Kzo9I	GATC	2 cut(s)	166, 378
LguI	GCTCTTC	1 cut(s)	258
LmnI	GCTCC	3 cut(s)	394, 475, 548
Lsp1109I	GCAGC	2 cut(s)	373, 438
LweI	GCATC	2 cut(s)	204, 498
MaeI	CTAG	1 cut(s)	170
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	2 cut(s)	168, 380
MboI	GATC	2 cut(s)	166, 378
MboII	GAAGA	5 cut(s)	88, 275, 396, 455, 566
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	5 cut(s)	125, 161, 196, 321, 344
MlyI	GAGTC	2 cut(s)	80, 323
MnlI	CCTC	8 cut(s)	49, 79, 133, 136, 238, 285, 328, 522
Mph1103I	ATGCAT	1 cut(s)	219
MroI	TCCGGA	1 cut(s)	504
MseI	TTAA	4 cut(s)	48, 195, 200, 583
MspI	CCGG	2 cut(s)	62, 505
MspR9I	CCNGG	2 cut(s)	62, 392
MvaI	CCWGG	1 cut(s)	392
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	293
NciI	CCSGG	1 cut(s)	62
NdeII	GATC	2 cut(s)	166, 378
NlaIII	CATG	3 cut(s)	23, 221, 543
NlaIV	GGNNCC	2 cut(s)	60, 226
NmuCI	GTSAC	1 cut(s)	236
NsiI	ATGCAT	1 cut(s)	219
NspI	RCATGY	1 cut(s)	221
PagI	TCATGA	1 cut(s)	19
PceI	AGGCCT	1 cut(s)	248
PciSI	GCTCTTC	1 cut(s)	258
PfeI	GAWTC	2 cut(s)	281, 458
PkrI	GCNGC	2 cut(s)	388, 453
PleI	GAGTC	2 cut(s)	79, 323
PpsI	GAGTC	2 cut(s)	79, 323
PpuMI	RGGWCCY	2 cut(s)	58, 531
PsiI	TTATAA	1 cut(s)	149
Psp5II	RGGWCCY	2 cut(s)	58, 531
Psp6I	CCWGG	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	390
PspN4I	GGNNCC	2 cut(s)	60, 226
PspPI	GGNCC	2 cut(s)	58, 531
PspPPI	RGGWCCY	2 cut(s)	58, 531
PstI	CTGCAG	1 cut(s)	456
PsuI	RGATCY	1 cut(s)	166
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
SapI	GCTCTTC	1 cut(s)	258
SaqAI	TTAA	4 cut(s)	48, 195, 200, 583
SatI	GCNGC	2 cut(s)	387, 452
Sau3AI	GATC	2 cut(s)	166, 378
Sau96I	GGNCC	2 cut(s)	58, 531
SchI	GAGTC	2 cut(s)	80, 323
ScrFI	CCNGG	2 cut(s)	62, 392
SduI	GDGCHC	1 cut(s)	298
SfaNI	GCATC	2 cut(s)	204, 498
SfcI	CTRYAG	1 cut(s)	452
SinI	GGWCC	2 cut(s)	58, 531
Sse9I	AATT	5 cut(s)	125, 161, 196, 321, 344
SseBI	AGGCCT	1 cut(s)	248
SspMI	CTAG	1 cut(s)	170
StuI	AGGCCT	1 cut(s)	248
StyD4I	CCNGG	2 cut(s)	60, 390
StyI	CCWWGG	2 cut(s)	228, 258
TaqI	TCGA	1 cut(s)	74
TasI	AATT	5 cut(s)	125, 161, 196, 321, 344
TfiI	GAWTC	2 cut(s)	281, 458
Tru1I	TTAA	4 cut(s)	48, 195, 200, 583
Tru9I	TTAA	4 cut(s)	48, 195, 200, 583
TscAI	CASTG	1 cut(s)	579
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	2 cut(s)	386, 451
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	3 cut(s)	36, 396, 528
TspRI	CASTG	1 cut(s)	579
VpaK11BI	GGWCC	2 cut(s)	58, 531
XapI	RAATTY	1 cut(s)	321
XceI	RCATGY	1 cut(s)	221
XspI	CTAG	1 cut(s)	170
Zsp2I	ATGCAT	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.