Rh6BG206600

WPP domain-interacting tail-anchored protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002372
Physical Location & Seq
Reverse (-)
38947448 .. 38950468
3021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG206600.1

Sequence Viewer

Length: 1023 bp
ATGGATTATGATGCTACTCATGAAGCAAGTGATTTTGGCAACGATGTTAATATTGACGTCCCATTAGTAGAATCAAATAGAGTTGATAGTCTTGATAAGGTTTCATTTGATGGCATGGTTATAGAAGAATTACAAAATGTGGGCGAGGTTATAACTGGAGTTGAGTTGGATCTAGCATGTGCTTCTGAGAAGTTGCTTAATTTAATTGGTTTTATGATGCATGTGGCAACCAAGGAGAGTGACTTTGATGCCTTTATATCCAATGAAGAGCAGACAATAGTTGGTTCTGTCGAGAAGGCTCTAGAGTTCACTCTCTTATCTGGAATATTAGACTCTGAGGTAGGTGAATTGGATAAGGTCATAGCTTTACTTCAAATGGAAATTACGGCTGCGCAAGAGCTATTATCTTTATATACATACTTAGGAGAAACATTTACAGTAATAGAAGAAAAGCTGCAGGATTCTGAGCAGTCTTTGAAGCAGTTGCAAGAACAAATCTCTGAAATCAGGATGCAATCTCTGAAGTTCCAGAGGACCCTTTCATGCTTCGATGGAGAAGAAAATTGGAATAACAACAAAGGAGTACTGGGCCATTTAGACGATGACATATTTTCAAGCAAGAATGTACTAATGAAAATGCAAACTGTTAAACATCAGAGACATATTTTGAGGATGCTAGAGAAATCTTTGGCAAGAGAAATGGATCTTGAAAAGAAATTGACTGAATCAAAACAAATTGAAGAGGATCTAAAACTGAGACTACTCTCTACAGAACAAGAGGCATATTGCATGGAGGATGAAATCAGTGAAATGAGAAATGTTATTACAGATCTGAAAGAAAAAGAATCAAAAGTTGAAGATAGGGCTCGGAATGCAGAAGCCAAATATAAATTATTAGCAGAGACCAACACAGAACTTAATGAAGAGCTCAGACTTCTTAAGACACGGTTAACAGAATTGACATGCGGTTGCAACATGCCGTGGCAACTGTTGAGGCTCGGTAGGAGAAACAAAACATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0012505 GO:0016020 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

340

Amino Acids

38.92

Weight (kDa)

4.61

Isoelectric Point (pI)

56.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WIT1_2_N PF26581 45 - 183 3.1e-54 WIT1/2, N-terminal helical bundle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 152
AatII GACGTC 1 cut(s) 60
Acc16I TGCGCA 1 cut(s) 393
AciI CCGC 1 cut(s) 966
AclWI GGATC 3 cut(s) 177, 711, 753
AcuI CTGAAG 1 cut(s) 542
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 2 cut(s) 585, 627
AflII CTTAAG 1 cut(s) 938
AflIII ACRYGT 1 cut(s) 1016
AgsI TTSAA 6 cut(s) 374, 478, 615, 710, 740, 857
AluBI AGCT 4 cut(s) 365, 400, 454, 928
AluI AGCT 4 cut(s) 365, 400, 454, 928
Alw21I GWGCWC 1 cut(s) 930
Alw26I GTCTC 3 cut(s) 652, 751, 896
AlwI GGATC 3 cut(s) 177, 711, 753
AoxI GGCC 1 cut(s) 589
ApeKI GCWGC 2 cut(s) 389, 454
AspLEI GCGC 1 cut(s) 394
AspS9I GGNCC 2 cut(s) 534, 589
AsuHPI GGTGA 1 cut(s) 356
AvaII GGWCC 1 cut(s) 534
BanII GRGCYC 2 cut(s) 868, 930
Bbv12I GWGCWC 1 cut(s) 930
BbvI GCAGC 2 cut(s) 376, 441
BccI CCATC 2 cut(s) 104, 545
BceAI ACGGC 2 cut(s) 402, 964
BcoDI GTCTC 3 cut(s) 652, 751, 896
BfaI CTAG 3 cut(s) 173, 302, 677
BfmI CTRYAG 2 cut(s) 455, 768
BfrI CTTAAG 1 cut(s) 938
BglII AGATCT 1 cut(s) 829
BisI GCNGC 2 cut(s) 390, 455
BlsI GCNGC 2 cut(s) 391, 456
BmcAI AGTACT 1 cut(s) 585
Bme18I GGWCC 1 cut(s) 534
BmgT120I GGNCC 2 cut(s) 534, 589
BmiI GGNNCC 1 cut(s) 536
BmrI ACTGGG 1 cut(s) 596
BmsI GCATC 4 cut(s) 207, 238, 501, 663
BmuI ACTGGG 1 cut(s) 596
BpmI CTGGAG 1 cut(s) 177
BsaHI GRCGYC 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 896
BsaJI CCNNGG 2 cut(s) 231, 980
Bse1I ACTGG 2 cut(s) 160, 591
BseDI CCNNGG 2 cut(s) 231, 980
BseGI GGATG 3 cut(s) 516, 678, 802
BseMII CTCAG 5 cut(s) 177, 327, 456, 746, 943
BseNI ACTGG 2 cut(s) 160, 591
BseXI GCAGC 2 cut(s) 376, 441
BshFI GGCC 1 cut(s) 591
BsiHKAI GWGCWC 1 cut(s) 930
BslFI GGGAC 1 cut(s) 44
BsmAI GTCTC 3 cut(s) 652, 751, 896
BsmFI GGGAC 1 cut(s) 44
BsmI GAATGC 1 cut(s) 877
BsnI GGCC 1 cut(s) 591
Bso31I GGTCTC 1 cut(s) 896
Bsp1286I GDGCHC 2 cut(s) 868, 930
Bsp143I GATC 4 cut(s) 169, 703, 745, 829
BspACI CCGC 1 cut(s) 966
BspANI GGCC 1 cut(s) 591
BspCNI CTCAG 5 cut(s) 178, 328, 457, 747, 942
BspHI TCATGA 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 536
BspMAI CTGCAG 1 cut(s) 459
BspPI GGATC 3 cut(s) 177, 711, 753
BspQI GCTCTTC 2 cut(s) 261, 918
BspTI CTTAAG 1 cut(s) 938
BspTNI GGTCTC 1 cut(s) 896
BsrI ACTGG 2 cut(s) 160, 591
BssECI CCNNGG 2 cut(s) 231, 980
BssMI GATC 4 cut(s) 169, 703, 745, 829
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 231
Bst4CI ACNGT 4 cut(s) 439, 646, 948, 990
Bst6I CTCTTC 3 cut(s) 261, 735, 918
BstACI GRCGYC 1 cut(s) 57
BstAFI CTTAAG 1 cut(s) 938
BstDEI CTNAG 6 cut(s) 186, 336, 421, 465, 755, 929
BstDSI CCRYGG 1 cut(s) 980
BstF5I GGATG 3 cut(s) 516, 678, 802
BstHHI GCGC 1 cut(s) 394
BstKTI GATC 4 cut(s) 172, 706, 748, 832
BstMAI GTCTC 3 cut(s) 652, 751, 896
BstMBI GATC 4 cut(s) 169, 703, 745, 829
BstMWI GCNNNNNNNGC 1 cut(s) 872
BstNSI RCATGY 5 cut(s) 180, 224, 966, 979, 1020
BstSFI CTRYAG 2 cut(s) 455, 768
BstV1I GCAGC 2 cut(s) 376, 441
BstX2I RGATCY 4 cut(s) 169, 703, 745, 829
BstYI RGATCY 4 cut(s) 169, 703, 745, 829
BsuRI GGCC 1 cut(s) 591
BtgI CCRYGG 1 cut(s) 980
BtsCI GGATG 3 cut(s) 516, 678, 802
BtsIMutI CAGTG 1 cut(s) 811
CciI TCATGA 1 cut(s) 19
CfoI GCGC 1 cut(s) 394
Cfr13I GGNCC 2 cut(s) 534, 589
Csp6I GTAC 2 cut(s) 584, 626
CviAII CATG 9 cut(s) 20, 115, 177, 221, 543, 790, 963, 976, 1017
CviQI GTAC 2 cut(s) 584, 626
DdeI CTNAG 6 cut(s) 186, 336, 421, 465, 755, 929
DpnI GATC 4 cut(s) 171, 705, 747, 831
DpnII GATC 4 cut(s) 169, 703, 745, 829
Eam1104I CTCTTC 3 cut(s) 261, 735, 918
EarI CTCTTC 3 cut(s) 261, 735, 918
Ecl136II GAGCTC 1 cut(s) 928
Eco130I CCWWGG 1 cut(s) 231
Eco24I GRGCYC 2 cut(s) 868, 930
Eco31I GGTCTC 1 cut(s) 896
Eco47I GGWCC 1 cut(s) 534
Eco53kI GAGCTC 1 cut(s) 928
Eco57I CTGAAG 1 cut(s) 542
EcoICRI GAGCTC 1 cut(s) 928
EcoO109I RGGNCCY 1 cut(s) 534
EcoT14I CCWWGG 1 cut(s) 231
EcoT22I ATGCAT 1 cut(s) 222
EcoT38I GRGCYC 2 cut(s) 868, 930
ErhI CCWWGG 1 cut(s) 231
FaeI CATG 9 cut(s) 23, 118, 180, 224, 546, 793, 966, 979, 1020
FaqI GGGAC 1 cut(s) 44
FatI CATG 9 cut(s) 19, 114, 176, 220, 542, 789, 962, 975, 1016
Fnu4HI GCNGC 2 cut(s) 390, 455
FokI GGATG 3 cut(s) 523, 685, 809
FriOI GRGCYC 2 cut(s) 868, 930
Fsp4HI GCNGC 2 cut(s) 390, 455
FspBI CTAG 3 cut(s) 173, 302, 677
FspI TGCGCA 1 cut(s) 393
GlaI GCGC 1 cut(s) 393
GluI GCNGC 2 cut(s) 390, 455
GsuI CTGGAG 1 cut(s) 177
HaeIII GGCC 1 cut(s) 591
HhaI GCGC 1 cut(s) 394
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 9 cut(s) 23, 118, 180, 224, 546, 793, 966, 979, 1020
Hin6I GCGC 1 cut(s) 392
HinP1I GCGC 1 cut(s) 392
HincII GTYRAC 1 cut(s) 951
HindII GTYRAC 1 cut(s) 951
HinfI GANTC 5 cut(s) 71, 332, 461, 725, 845
HpaI GTTAAC 1 cut(s) 951
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 2 cut(s) 309, 951
Hpy188I TCNGA 9 cut(s) 187, 337, 466, 502, 522, 657, 834, 870, 932
Hpy188III TCNNGA 8 cut(s) 20, 92, 292, 302, 321, 508, 529, 707
Hpy8I GTNNAC 2 cut(s) 309, 951
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 4 cut(s) 439, 646, 948, 990
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 8 cut(s) 220, 457, 487, 514, 640, 789, 875, 972
HpyF10VI GCNNNNNNNGC 1 cut(s) 872
HpyF3I CTNAG 6 cut(s) 186, 336, 421, 465, 755, 929
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 9 cut(s) 23, 118, 180, 224, 546, 793, 966, 979, 1020
HspAI GCGC 1 cut(s) 392
KspAI GTTAAC 1 cut(s) 951
Kzo9I GATC 4 cut(s) 169, 703, 745, 829
LguI GCTCTTC 2 cut(s) 261, 918
LpnPI CCDG 6 cut(s) 141, 306, 443, 493, 542, 572
Lsp1109I GCAGC 2 cut(s) 376, 441
LweI GCATC 4 cut(s) 207, 238, 501, 663
MaeI CTAG 3 cut(s) 173, 302, 677
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 239
MalI GATC 4 cut(s) 171, 705, 747, 831
MboI GATC 4 cut(s) 169, 703, 745, 829
MboII GAAGA 7 cut(s) 137, 278, 458, 569, 752, 869, 935
MflI RGATCY 4 cut(s) 169, 703, 745, 829
MhlI GDGCHC 2 cut(s) 868, 930
MlyI GAGTC 1 cut(s) 326
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 8 cut(s) 139, 331, 525, 663, 736, 772, 787, 987
Mph1103I ATGCAT 1 cut(s) 222
MseI TTAA 7 cut(s) 48, 198, 203, 648, 918, 939, 950
MspCI CTTAAG 1 cut(s) 938
Mva1269I GAATGC 1 cut(s) 877
MwoI GCNNNNNNNGC 1 cut(s) 872
NdeII GATC 4 cut(s) 169, 703, 745, 829
NlaIII CATG 9 cut(s) 23, 118, 180, 224, 546, 793, 966, 979, 1020
NlaIV GGNNCC 1 cut(s) 536
NmuCI GTSAC 1 cut(s) 239
NsbI TGCGCA 1 cut(s) 393
NsiI ATGCAT 1 cut(s) 222
NspI RCATGY 5 cut(s) 180, 224, 966, 979, 1020
PagI TCATGA 1 cut(s) 19
PciI ACATGT 1 cut(s) 1016
PciSI GCTCTTC 2 cut(s) 261, 918
PctI GAATGC 1 cut(s) 877
PfeI GAWTC 4 cut(s) 71, 461, 725, 845
PkrI GCNGC 2 cut(s) 391, 456
PleI GAGTC 1 cut(s) 326
PpsI GAGTC 1 cut(s) 326
PpuMI RGGWCCY 1 cut(s) 534
PscI ACATGT 1 cut(s) 1016
PsiI TTATAA 1 cut(s) 152
Psp124BI GAGCTC 1 cut(s) 930
Psp5II RGGWCCY 1 cut(s) 534
PspN4I GGNNCC 1 cut(s) 536
PspPI GGNCC 2 cut(s) 534, 589
PspPPI RGGWCCY 1 cut(s) 534
PstI CTGCAG 1 cut(s) 459
PsuI RGATCY 4 cut(s) 169, 703, 745, 829
RsaI GTAC 2 cut(s) 585, 627
RsaNI GTAC 2 cut(s) 584, 626
SacI GAGCTC 1 cut(s) 930
SapI GCTCTTC 2 cut(s) 261, 918
SaqAI TTAA 7 cut(s) 48, 198, 203, 648, 918, 939, 950
SatI GCNGC 2 cut(s) 390, 455
Sau3AI GATC 4 cut(s) 169, 703, 745, 829
Sau96I GGNCC 2 cut(s) 534, 589
ScaI AGTACT 1 cut(s) 585
SchI GAGTC 1 cut(s) 326
SduI GDGCHC 2 cut(s) 868, 930
SfaNI GCATC 4 cut(s) 207, 238, 501, 663
SfcI CTRYAG 2 cut(s) 455, 768
SinI GGWCC 1 cut(s) 534
SmlI CTYRAG 1 cut(s) 938
SmoI CTYRAG 1 cut(s) 938
SsiI CCGC 1 cut(s) 966
SspI AATATT 2 cut(s) 52, 327
SspMI CTAG 3 cut(s) 173, 302, 677
SstI GAGCTC 1 cut(s) 930
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 4 cut(s) 439, 646, 948, 990
TaiI ACGT 1 cut(s) 60
TaqI TCGA 2 cut(s) 291, 549
TatI WGTACW 2 cut(s) 583, 625
TfiI GAWTC 4 cut(s) 71, 461, 725, 845
Tru1I TTAA 7 cut(s) 48, 198, 203, 648, 918, 939, 950
Tru9I TTAA 7 cut(s) 48, 198, 203, 648, 918, 939, 950
TscAI CASTG 1 cut(s) 811
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 2 cut(s) 389, 454
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 7 cut(s) 36, 93, 279, 531, 647, 813, 936
TspRI CASTG 1 cut(s) 811
Vha464I CTTAAG 1 cut(s) 938
VpaK11BI GGWCC 1 cut(s) 534
XbaI TCTAGA 1 cut(s) 301
XceI RCATGY 5 cut(s) 180, 224, 966, 979, 1020
XspI CTAG 3 cut(s) 173, 302, 677
ZraI GACGTC 1 cut(s) 58
ZrmI AGTACT 1 cut(s) 585
Zsp2I ATGCAT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.