Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002372

Physical Location & Seq

Genomic Coordinates Reverse (-)

11893318 .. 11894129

Gene Structure 812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g13612.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGACAATGATGCTACTTATGAAGCAGGTGTTTTTGACAATAAAGTTAATATTGACATCGCAATAGTAGAGATGAGTAAAGTTGACAGTTTTGAAATTGTCTCATTTGATGGCATGGTTATAGCAGAAATACAAAAAATAAGTGAGGTTATACCTAGAGTTGAGTTGGACATAGCATGTGCTTCTGAGAAGTTGCTTAATTTAAGTGGTTTTATGATGCAAGTGGCAACCAAGAAGAGTGATTTTGAGGCCTTTATTTTCAATGAAGAGCATGAAACAATTGATTATGTCAACATGAAACTGGAGTTCACTCTCCTATCTAGAATTTTAGACTCTGAGGCGGGTGAATTAGATAAGCTCATGGCTCTACTTCAAATAGAGATCACGGTTTCCCAAGAGTTGTTGTCTCCATACACATACTTGGGAGAAATATTTACATTAATGGAAGAAAAATTGCACAATGCTGAGCAGTCTTTGAAGCAGTTACAAGAACATGTATCTGAAATCAAGATGCAATCTTTGAAGTTCCAGAAAAAAATTCATGCTTCGATGGAGAAGAAAACTGAGCGGCCTTTGGGCCGTACCATGTGTGCGGTCGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0012505 GO:0016020 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

201

Amino Acids

22.77

Weight (kDa)

4.67

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WIT1_2_N	PF26581	45 - 182	1.2e-46	WIT1/2, N-terminal helical bundle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11390
fragaria_vesca	FvH4_2g13612 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070
malus_domestica	MD09G1077300.v1.1 MD17G1067700.v1.1
prunus_persica	Prupe.3G246700_v2.0.a1
pyrus_communis	pycom09g00440 pycom17g06810
rosa_chinensis	RchiOBHm_Chr2g0164391 RchiOBHm_Chr6g0275231
rosa_laevigata	RLG00000013484 RLG00000021457
rosa_multiflora	Rmu_sc0009487.1_g000004 Rmu_sc0010331.1_g000002 Rmu_sc0015626.1_g000002 Rmu_sc0022221.1_g000006 Rmu_ssc0000041.1_g000026
rosa_roxburghii	Rroxscaffold_2G00086600 Rroxscaffold_7G00193530
rosa_rugosa	Rorug02G0508300 Rorug06G0090400
rosa_samantha	Rh2AG576300 Rh2BG587300 Rh2CG558100 Rh2DG597000 Rh6AG203700 Rh6BG206600 Rh6CG209200 Rh6DG199200
rosa_wichuraiana	Rw2G047730 Rw2G047830 Rw6G017690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	17
Acc36I	ACCTGC	1 cut(s)	17
AccBSI	CCGCTC	1 cut(s)	568
AciI	CCGC	3 cut(s)	341, 568, 593
AcsI	RAATTY	2 cut(s)	324, 537
AfaI	GTAC	1 cut(s)	583
AflIII	ACRYGT	1 cut(s)	493
AgsI	TTSAA	5 cut(s)	95, 262, 374, 478, 523
AluBI	AGCT	1 cut(s)	358
AluI	AGCT	1 cut(s)	358
Alw26I	GTCTC	2 cut(s)	106, 411
AoxI	GGCC	3 cut(s)	249, 569, 577
ApoI	RAATTY	2 cut(s)	324, 537
AseI	ATTAAT	1 cut(s)	440
AspS9I	GGNCC	1 cut(s)	577
AsuHPI	GGTGA	1 cut(s)	356
BccI	CCATC	2 cut(s)	104, 544
BceAI	ACGGC	1 cut(s)	564
BcoDI	GTCTC	2 cut(s)	106, 411
BfaI	CTAG	2 cut(s)	156, 321
BfuAI	ACCTGC	1 cut(s)	17
BisI	GCNGC	1 cut(s)	569
BlpI	GCTNAGC	1 cut(s)	465
BlsI	GCNGC	1 cut(s)	570
BmgT120I	GGNCC	1 cut(s)	577
BmsI	GCATC	2 cut(s)	207, 501
BpmI	CTGGAG	1 cut(s)	323
Bpu1102I	GCTNAGC	1 cut(s)	465
Bse1I	ACTGG	1 cut(s)	306
BseMII	CTCAG	4 cut(s)	177, 327, 456, 555
BseNI	ACTGG	1 cut(s)	306
Bsh1285I	CGRYCG	1 cut(s)	597
BshFI	GGCC	3 cut(s)	251, 571, 579
BsiEI	CGRYCG	1 cut(s)	597
BsmAI	GTCTC	2 cut(s)	106, 411
BsnI	GGCC	3 cut(s)	251, 571, 579
Bsp143I	GATC	1 cut(s)	381
Bsp1720I	GCTNAGC	1 cut(s)	465
BspACI	CCGC	3 cut(s)	341, 568, 593
BspANI	GGCC	3 cut(s)	251, 571, 579
BspCNI	CTCAG	4 cut(s)	178, 328, 457, 556
BspMI	ACCTGC	1 cut(s)	17
BspQI	GCTCTTC	1 cut(s)	261
BsrBI	CCGCTC	1 cut(s)	568
BsrI	ACTGG	1 cut(s)	306
BssMI	GATC	1 cut(s)	381
Bst4CI	ACNGT	2 cut(s)	89, 388
Bst6I	CTCTTC	2 cut(s)	230, 261
BstDEI	CTNAG	4 cut(s)	186, 336, 465, 564
BstKTI	GATC	1 cut(s)	384
BstMAI	GTCTC	2 cut(s)	106, 411
BstMBI	GATC	1 cut(s)	381
BstMCI	CGRYCG	1 cut(s)	597
BstNSI	RCATGY	2 cut(s)	180, 497
BsuRI	GGCC	3 cut(s)	251, 571, 579
BtgZI	GCGATG	1 cut(s)	43
BveI	ACCTGC	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	577
Csp6I	GTAC	1 cut(s)	582
CviAII	CATG	8 cut(s)	115, 177, 272, 295, 361, 494, 542, 586
CviJI	RGCY	5 cut(s)	251, 358, 365, 571, 579
CviKI_1	RGCY	5 cut(s)	251, 358, 365, 571, 579
CviQI	GTAC	1 cut(s)	582
DdeI	CTNAG	4 cut(s)	186, 336, 465, 564
DpnI	GATC	1 cut(s)	383
DpnII	GATC	1 cut(s)	381
Eam1104I	CTCTTC	2 cut(s)	230, 261
EarI	CTCTTC	2 cut(s)	230, 261
Eco147I	AGGCCT	1 cut(s)	251
FaeI	CATG	8 cut(s)	118, 180, 275, 298, 364, 497, 545, 589
FatI	CATG	8 cut(s)	114, 176, 271, 294, 360, 493, 541, 585
FauI	CCCGC	1 cut(s)	334
Fnu4HI	GCNGC	1 cut(s)	569
Fsp4HI	GCNGC	1 cut(s)	569
FspBI	CTAG	2 cut(s)	156, 321
GluI	GCNGC	1 cut(s)	569
GsuI	CTGGAG	1 cut(s)	323
HaeIII	GGCC	3 cut(s)	251, 571, 579
Hin1II	CATG	8 cut(s)	118, 180, 275, 298, 364, 497, 545, 589
HincII	GTYRAC	2 cut(s)	85, 292
HindII	GTYRAC	2 cut(s)	85, 292
HinfI	GANTC	1 cut(s)	332
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	3 cut(s)	85, 292, 309
Hpy188I	TCNGA	3 cut(s)	187, 337, 502
Hpy188III	TCNNGA	3 cut(s)	321, 508, 529
Hpy8I	GTNNAC	3 cut(s)	85, 292, 309
HpyCH4III	ACNGT	2 cut(s)	89, 388
HpyCH4V	TGCA	3 cut(s)	220, 457, 514
HpyF3I	CTNAG	4 cut(s)	186, 336, 465, 564
Hsp92II	CATG	8 cut(s)	118, 180, 275, 298, 364, 497, 545, 589
Kzo9I	GATC	1 cut(s)	381
LguI	GCTCTTC	1 cut(s)	261
LpnPI	CCDG	3 cut(s)	12, 287, 542
LweI	GCATC	2 cut(s)	207, 501
MaeI	CTAG	2 cut(s)	156, 321
MaeIII	GTNAC	1 cut(s)	483
MalI	GATC	1 cut(s)	383
MbiI	CCGCTC	1 cut(s)	568
MboI	GATC	1 cut(s)	381
MboII	GAAGA	4 cut(s)	247, 278, 458, 568
MfeI	CAATTG	1 cut(s)	279
MluCI	AATT	7 cut(s)	96, 199, 279, 324, 347, 452, 537
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	3 cut(s)	139, 241, 331
MseI	TTAA	4 cut(s)	48, 198, 203, 440
MunI	CAATTG	1 cut(s)	279
NdeII	GATC	1 cut(s)	381
NlaIII	CATG	8 cut(s)	118, 180, 275, 298, 364, 497, 545, 589
NspI	RCATGY	2 cut(s)	180, 497
PaqCI	CACCTGC	1 cut(s)	17
PceI	AGGCCT	1 cut(s)	251
PciI	ACATGT	1 cut(s)	493
PciSI	GCTCTTC	1 cut(s)	261
PkrI	GCNGC	1 cut(s)	570
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
PscI	ACATGT	1 cut(s)	493
PshBI	ATTAAT	1 cut(s)	440
PspPI	GGNCC	1 cut(s)	577
RsaI	GTAC	1 cut(s)	583
RsaNI	GTAC	1 cut(s)	582
SapI	GCTCTTC	1 cut(s)	261
SaqAI	TTAA	4 cut(s)	48, 198, 203, 440
SatI	GCNGC	1 cut(s)	569
Sau3AI	GATC	1 cut(s)	381
Sau96I	GGNCC	1 cut(s)	577
SchI	GAGTC	1 cut(s)	326
SetI	ASST	4 cut(s)	31, 150, 157, 360
SfaNI	GCATC	2 cut(s)	207, 501
Sse9I	AATT	7 cut(s)	96, 199, 279, 324, 347, 452, 537
SseBI	AGGCCT	1 cut(s)	251
SsiI	CCGC	3 cut(s)	341, 568, 593
SspI	AATATT	2 cut(s)	52, 432
SspMI	CTAG	2 cut(s)	156, 321
StuI	AGGCCT	1 cut(s)	251
TaaI	ACNGT	2 cut(s)	89, 388
TaqI	TCGA	1 cut(s)	548
TasI	AATT	7 cut(s)	96, 199, 279, 324, 347, 452, 537
TauI	GCSGC	1 cut(s)	571
Tru1I	TTAA	4 cut(s)	48, 198, 203, 440
Tru9I	TTAA	4 cut(s)	48, 198, 203, 440
TspDTI	ATGAA	5 cut(s)	36, 279, 288, 311, 530
VspI	ATTAAT	1 cut(s)	440
XapI	RAATTY	2 cut(s)	324, 537
XbaI	TCTAGA	1 cut(s)	320
XceI	RCATGY	2 cut(s)	180, 497
XspI	CTAG	2 cut(s)	156, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.