Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002372

Physical Location & Seq

Genomic Coordinates Reverse (-)

35556773 .. 35561038

Gene Structure 4266 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG199200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGATTATGATGCTACTCATGAAGCAAGTGATTTTGGCAACGATGTTAATATTGACGTCCCAGTAGTAGAATCAAATAGAGTTGATAGTCTTGAAAAGGTTTCATTTGATGGCATGGTTATAGAAGAATTACAAAATCTGGGCGAGGTTATAACTGGAGTTGAGTTGGATCTAGCATGTGCTTATGAGAAGTTGCTTAATTTAATTGGTTTTATGATGCATGTGGCAACCAAGGAGAGTGACTTTGATGCCTTTATATCCGATGAAGAGCAGACAATAGTTGGTTCTGTCGAGAAGGCTCTAGAGTTCACTCTCTTGTCTGGAATATTAGACTCTGAGGATTCTGAGCAGTCTTTGAAGCAGTTGCAAGAACAAATCTCTGAAATCAGGATGCAATCTCTGAAGTTCCAGAGGACCCTTTCATGCTTCGATGGAGAAGAAAATTGGAATAACAACAAAGGAGTACTGGGCCATTTAGAAGATGATATATTTTCAAGCAAGAATGTACTAATGAAAATGCAAACTGTTAAACATCAGAGACATATTTTGAGGATGCTAGATAAATCTTTGGCAAGAGAAATGGATCTTGAAAAGAAATTGACTGAATCAAAACAAATTGAAGAGGATCTAAAACTGAGACTACTCTCTTCAGAACAAGAGGCATATTGCATGGAGGATGAAATCAGTGAAATGAGAAATGTTGTTACAGATCTGAAAGAAAAAGAATCAAAAGTTGAAGATAGGGCTCGGAATGCAGAAGCCAAATATAAATTATTAGCAGAGACCAACACAGAACTTAATGAAGAGCTCAGACTTCTTAAGACACGGTTAACAGAATTGACATGCGGTTGCAACATGCCGTGGCAACTGTTGAGGCTAGGTAGGAGAAACAAAACATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0012505 GO:0016020 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

300

Amino Acids

34.48

Weight (kDa)

4.66

Isoelectric Point (pI)

58.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WIT1_2_N	PF26581	45 - 113	2.3e-24	WIT1/2, N-terminal helical bundle
WIT1_2_N	PF26581	114 - 143	1.5e-08	WIT1/2, N-terminal helical bundle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11390
fragaria_vesca	FvH4_2g13612 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070
malus_domestica	MD09G1077300.v1.1 MD17G1067700.v1.1
prunus_persica	Prupe.3G246700_v2.0.a1
pyrus_communis	pycom09g00440 pycom17g06810
rosa_chinensis	RchiOBHm_Chr2g0164391 RchiOBHm_Chr6g0275231
rosa_laevigata	RLG00000013484 RLG00000021457
rosa_multiflora	Rmu_sc0009487.1_g000004 Rmu_sc0010331.1_g000002 Rmu_sc0015626.1_g000002 Rmu_sc0022221.1_g000006 Rmu_ssc0000041.1_g000026
rosa_roxburghii	Rroxscaffold_2G00086600 Rroxscaffold_7G00193530
rosa_rugosa	Rorug02G0508300 Rorug06G0090400
rosa_samantha	Rh2AG576300 Rh2BG587300 Rh2CG558100 Rh2DG597000 Rh6AG203700 Rh6BG206600 Rh6CG209200 Rh6DG199200
rosa_wichuraiana	Rw2G047730 Rw2G047830 Rw6G017690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	152
AatII	GACGTC	1 cut(s)	60
AciI	CCGC	1 cut(s)	846
AclWI	GGATC	3 cut(s)	177, 591, 633
AcuI	CTGAAG	2 cut(s)	422, 633
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	2 cut(s)	465, 507
AflII	CTTAAG	1 cut(s)	818
AflIII	ACRYGT	1 cut(s)	896
AgsI	TTSAA	6 cut(s)	95, 358, 495, 590, 620, 737
AluBI	AGCT	1 cut(s)	808
AluI	AGCT	1 cut(s)	808
Alw21I	GWGCWC	1 cut(s)	810
Alw26I	GTCTC	3 cut(s)	532, 631, 776
AlwI	GGATC	3 cut(s)	177, 591, 633
AoxI	GGCC	1 cut(s)	469
AspS9I	GGNCC	2 cut(s)	414, 469
AvaII	GGWCC	1 cut(s)	414
BanII	GRGCYC	2 cut(s)	748, 810
Bbv12I	GWGCWC	1 cut(s)	810
BccI	CCATC	2 cut(s)	104, 425
BceAI	ACGGC	1 cut(s)	844
BcoDI	GTCTC	3 cut(s)	532, 631, 776
BfaI	CTAG	4 cut(s)	173, 302, 557, 878
BfrI	CTTAAG	1 cut(s)	818
BglII	AGATCT	1 cut(s)	709
BmcAI	AGTACT	1 cut(s)	465
Bme18I	GGWCC	1 cut(s)	414
BmgT120I	GGNCC	2 cut(s)	414, 469
BmiI	GGNNCC	1 cut(s)	416
BmrI	ACTGGG	2 cut(s)	56, 476
BmsI	GCATC	4 cut(s)	207, 238, 381, 543
BmuI	ACTGGG	2 cut(s)	56, 476
BpmI	CTGGAG	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	776
BsaJI	CCNNGG	2 cut(s)	231, 860
Bse1I	ACTGG	3 cut(s)	62, 160, 471
BseDI	CCNNGG	2 cut(s)	231, 860
BseGI	GGATG	3 cut(s)	396, 558, 682
BseMII	CTCAG	4 cut(s)	327, 336, 626, 823
BseNI	ACTGG	3 cut(s)	62, 160, 471
BshFI	GGCC	1 cut(s)	471
BsiHKAI	GWGCWC	1 cut(s)	810
BslFI	GGGAC	1 cut(s)	44
BsmAI	GTCTC	3 cut(s)	532, 631, 776
BsmFI	GGGAC	1 cut(s)	44
BsmI	GAATGC	1 cut(s)	757
BsnI	GGCC	1 cut(s)	471
Bso31I	GGTCTC	1 cut(s)	776
Bsp1286I	GDGCHC	2 cut(s)	748, 810
Bsp143I	GATC	4 cut(s)	169, 583, 625, 709
BspACI	CCGC	1 cut(s)	846
BspANI	GGCC	1 cut(s)	471
BspCNI	CTCAG	4 cut(s)	328, 337, 627, 822
BspHI	TCATGA	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	416
BspPI	GGATC	3 cut(s)	177, 591, 633
BspQI	GCTCTTC	2 cut(s)	261, 798
BspTI	CTTAAG	1 cut(s)	818
BspTNI	GGTCTC	1 cut(s)	776
BsrI	ACTGG	3 cut(s)	62, 160, 471
BssECI	CCNNGG	2 cut(s)	231, 860
BssMI	GATC	4 cut(s)	169, 583, 625, 709
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	231
Bst4CI	ACNGT	3 cut(s)	526, 828, 870
Bst6I	CTCTTC	4 cut(s)	261, 615, 652, 798
BstACI	GRCGYC	1 cut(s)	57
BstAFI	CTTAAG	1 cut(s)	818
BstDEI	CTNAG	4 cut(s)	336, 345, 635, 809
BstDSI	CCRYGG	1 cut(s)	860
BstF5I	GGATG	3 cut(s)	396, 558, 682
BstKTI	GATC	4 cut(s)	172, 586, 628, 712
BstMAI	GTCTC	3 cut(s)	532, 631, 776
BstMBI	GATC	4 cut(s)	169, 583, 625, 709
BstMWI	GCNNNNNNNGC	1 cut(s)	752
BstNSI	RCATGY	5 cut(s)	180, 224, 846, 859, 900
BstX2I	RGATCY	4 cut(s)	169, 583, 625, 709
BstYI	RGATCY	4 cut(s)	169, 583, 625, 709
BsuRI	GGCC	1 cut(s)	471
BtgI	CCRYGG	1 cut(s)	860
BtsCI	GGATG	3 cut(s)	396, 558, 682
BtsIMutI	CAGTG	1 cut(s)	691
CciI	TCATGA	1 cut(s)	19
Cfr13I	GGNCC	2 cut(s)	414, 469
Csp6I	GTAC	2 cut(s)	464, 506
CviAII	CATG	9 cut(s)	20, 115, 177, 221, 423, 670, 843, 856, 897
CviJI	RGCY	6 cut(s)	299, 471, 746, 761, 808, 877
CviKI_1	RGCY	6 cut(s)	299, 471, 746, 761, 808, 877
CviQI	GTAC	2 cut(s)	464, 506
DdeI	CTNAG	4 cut(s)	336, 345, 635, 809
DpnI	GATC	4 cut(s)	171, 585, 627, 711
DpnII	GATC	4 cut(s)	169, 583, 625, 709
Eam1104I	CTCTTC	4 cut(s)	261, 615, 652, 798
EarI	CTCTTC	4 cut(s)	261, 615, 652, 798
Ecl136II	GAGCTC	1 cut(s)	808
Eco130I	CCWWGG	1 cut(s)	231
Eco24I	GRGCYC	2 cut(s)	748, 810
Eco31I	GGTCTC	1 cut(s)	776
Eco47I	GGWCC	1 cut(s)	414
Eco53kI	GAGCTC	1 cut(s)	808
Eco57I	CTGAAG	2 cut(s)	422, 633
EcoICRI	GAGCTC	1 cut(s)	808
EcoO109I	RGGNCCY	1 cut(s)	414
EcoT14I	CCWWGG	1 cut(s)	231
EcoT22I	ATGCAT	1 cut(s)	222
EcoT38I	GRGCYC	2 cut(s)	748, 810
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	9 cut(s)	23, 118, 180, 224, 426, 673, 846, 859, 900
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	9 cut(s)	19, 114, 176, 220, 422, 669, 842, 855, 896
FokI	GGATG	3 cut(s)	403, 565, 689
FriOI	GRGCYC	2 cut(s)	748, 810
FspBI	CTAG	4 cut(s)	173, 302, 557, 878
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	471
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	9 cut(s)	23, 118, 180, 224, 426, 673, 846, 859, 900
HincII	GTYRAC	1 cut(s)	831
HindII	GTYRAC	1 cut(s)	831
HinfI	GANTC	5 cut(s)	71, 332, 341, 605, 725
HpaI	GTTAAC	1 cut(s)	831
Hpy166II	GTNNAC	2 cut(s)	309, 831
Hpy188III	TCNNGA	8 cut(s)	20, 92, 292, 302, 321, 388, 409, 587
Hpy8I	GTNNAC	2 cut(s)	309, 831
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	3 cut(s)	526, 828, 870
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	7 cut(s)	220, 367, 394, 520, 669, 755, 852
HpyF10VI	GCNNNNNNNGC	1 cut(s)	752
HpyF3I	CTNAG	4 cut(s)	336, 345, 635, 809
HpySE526I	ACGT	1 cut(s)	57
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	9 cut(s)	23, 118, 180, 224, 426, 673, 846, 859, 900
KspAI	GTTAAC	1 cut(s)	831
Kzo9I	GATC	4 cut(s)	169, 583, 625, 709
LguI	GCTCTTC	2 cut(s)	261, 798
LpnPI	CCDG	7 cut(s)	75, 125, 141, 306, 373, 422, 452
LweI	GCATC	4 cut(s)	207, 238, 381, 543
MaeI	CTAG	4 cut(s)	173, 302, 557, 878
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	2 cut(s)	239, 703
MalI	GATC	4 cut(s)	171, 585, 627, 711
MboI	GATC	4 cut(s)	169, 583, 625, 709
MboII	GAAGA	8 cut(s)	137, 278, 449, 491, 632, 639, 749, 815
MflI	RGATCY	4 cut(s)	169, 583, 625, 709
MhlI	GDGCHC	2 cut(s)	748, 810
MluCI	AATT	8 cut(s)	128, 199, 204, 442, 596, 615, 770, 836
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	8 cut(s)	139, 331, 405, 543, 616, 652, 667, 867
Mph1103I	ATGCAT	1 cut(s)	222
MseI	TTAA	7 cut(s)	48, 198, 203, 528, 798, 819, 830
MspCI	CTTAAG	1 cut(s)	818
Mva1269I	GAATGC	1 cut(s)	757
MwoI	GCNNNNNNNGC	1 cut(s)	752
NdeII	GATC	4 cut(s)	169, 583, 625, 709
NlaIII	CATG	9 cut(s)	23, 118, 180, 224, 426, 673, 846, 859, 900
NlaIV	GGNNCC	1 cut(s)	416
NmuCI	GTSAC	1 cut(s)	239
NsiI	ATGCAT	1 cut(s)	222
NspI	RCATGY	5 cut(s)	180, 224, 846, 859, 900
PagI	TCATGA	1 cut(s)	19
PciI	ACATGT	1 cut(s)	896
PciSI	GCTCTTC	2 cut(s)	261, 798
PctI	GAATGC	1 cut(s)	757
PfeI	GAWTC	4 cut(s)	71, 341, 605, 725
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
PpuMI	RGGWCCY	1 cut(s)	414
PscI	ACATGT	1 cut(s)	896
PsiI	TTATAA	1 cut(s)	152
Psp124BI	GAGCTC	1 cut(s)	810
Psp5II	RGGWCCY	1 cut(s)	414
PspN4I	GGNNCC	1 cut(s)	416
PspPI	GGNCC	2 cut(s)	414, 469
PspPPI	RGGWCCY	1 cut(s)	414
PsuI	RGATCY	4 cut(s)	169, 583, 625, 709
RsaI	GTAC	2 cut(s)	465, 507
RsaNI	GTAC	2 cut(s)	464, 506
SacI	GAGCTC	1 cut(s)	810
SapI	GCTCTTC	2 cut(s)	261, 798
SaqAI	TTAA	7 cut(s)	48, 198, 203, 528, 798, 819, 830
Sau3AI	GATC	4 cut(s)	169, 583, 625, 709
Sau96I	GGNCC	2 cut(s)	414, 469
ScaI	AGTACT	1 cut(s)	465
SchI	GAGTC	1 cut(s)	326
SduI	GDGCHC	2 cut(s)	748, 810
SetI	ASST	5 cut(s)	60, 102, 150, 810, 883
SfaNI	GCATC	4 cut(s)	207, 238, 381, 543
SinI	GGWCC	1 cut(s)	414
SmlI	CTYRAG	1 cut(s)	818
SmoI	CTYRAG	1 cut(s)	818
Sse9I	AATT	8 cut(s)	128, 199, 204, 442, 596, 615, 770, 836
SsiI	CCGC	1 cut(s)	846
SspI	AATATT	2 cut(s)	52, 327
SspMI	CTAG	4 cut(s)	173, 302, 557, 878
SstI	GAGCTC	1 cut(s)	810
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	3 cut(s)	526, 828, 870
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	291, 429
TasI	AATT	8 cut(s)	128, 199, 204, 442, 596, 615, 770, 836
TatI	WGTACW	2 cut(s)	463, 505
TfiI	GAWTC	4 cut(s)	71, 341, 605, 725
Tru1I	TTAA	7 cut(s)	48, 198, 203, 528, 798, 819, 830
Tru9I	TTAA	7 cut(s)	48, 198, 203, 528, 798, 819, 830
TscAI	CASTG	1 cut(s)	691
TseFI	GTSAC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	7 cut(s)	36, 93, 279, 411, 527, 693, 816
TspRI	CASTG	1 cut(s)	691
Vha464I	CTTAAG	1 cut(s)	818
VpaK11BI	GGWCC	1 cut(s)	414
XbaI	TCTAGA	1 cut(s)	301
XceI	RCATGY	5 cut(s)	180, 224, 846, 859, 900
XspI	CTAG	4 cut(s)	173, 302, 557, 878
ZraI	GACGTC	1 cut(s)	58
ZrmI	AGTACT	1 cut(s)	465
Zsp2I	ATGCAT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.