Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000041.1

Orthogroup ID

OG0002372

Physical Location & Seq

Genomic Coordinates Reverse (-)

113900 .. 114496

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000041.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atggattatgatgctactcatgaagcaagtgattttggcaacgatgttaatattgacgtcccagtagtagaatcaattagagttgatagtcttgaaaaggtttcatttgatggcatggttatagaagaattacaaaatctgggcgaggttataactggagttgagttggatctagcatgtgcttctgagaagttgcttaatttaattggttttatgatgcatgtggcaaccaaggagagtgactttgatgcctttatatccaatgaagagcagacaatagttggttctgtcgagaaggctctagagttcactctcttgtctggaatattagactctgaggtaggtgaattggataaggtcatagctttacttcaaatggaaattacggctgcgcaagagctattatctttatatacatacttaggagaaacatttacagtaatagaagaaaagctgcaggattctgagcagtctttgaagcagttgcaagaacaaatctctgaaatcaggatgcaatctctgaagttccagaggaccctttcatgctacgacggagaagaaaattgtaagctaccagtctcattcaaaatgctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0012505 GO:0016020 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

198

Amino Acids

22.15

Weight (kDa)

4.1

Isoelectric Point (pI)

58.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11390
fragaria_vesca	FvH4_2g13612 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070 FvH4_6g46070
malus_domestica	MD09G1077300.v1.1 MD17G1067700.v1.1
prunus_persica	Prupe.3G246700_v2.0.a1
pyrus_communis	pycom09g00440 pycom17g06810
rosa_chinensis	RchiOBHm_Chr2g0164391 RchiOBHm_Chr6g0275231
rosa_laevigata	RLG00000013484 RLG00000021457
rosa_multiflora	Rmu_sc0009487.1_g000004 Rmu_sc0010331.1_g000002 Rmu_sc0015626.1_g000002 Rmu_sc0022221.1_g000006 Rmu_ssc0000041.1_g000026
rosa_roxburghii	Rroxscaffold_2G00086600 Rroxscaffold_7G00193530
rosa_rugosa	Rorug02G0508300 Rorug06G0090400
rosa_samantha	Rh2AG576300 Rh2BG587300 Rh2CG558100 Rh2DG597000 Rh6AG203700 Rh6BG206600 Rh6CG209200 Rh6DG199200
rosa_wichuraiana	Rw2G047730 Rw2G047830 Rw6G017690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	152
AatII	GACGTC	1 cut(s)	60
Acc16I	TGCGCA	1 cut(s)	393
AclWI	GGATC	1 cut(s)	177
AcuI	CTGAAG	1 cut(s)	542
AcyI	GRCGYC	1 cut(s)	57
AgsI	TTSAA	4 cut(s)	95, 374, 478, 586
AluBI	AGCT	4 cut(s)	365, 400, 454, 571
AluI	AGCT	4 cut(s)	365, 400, 454, 571
Alw26I	GTCTC	1 cut(s)	583
AlwI	GGATC	1 cut(s)	177
ApeKI	GCWGC	2 cut(s)	389, 454
AspLEI	GCGC	1 cut(s)	394
AspS9I	GGNCC	1 cut(s)	534
AsuHPI	GGTGA	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	534
BbvI	GCAGC	2 cut(s)	376, 441
BccI	CCATC	1 cut(s)	104
BceAI	ACGGC	1 cut(s)	402
BcoDI	GTCTC	1 cut(s)	583
BfaI	CTAG	2 cut(s)	173, 302
BfmI	CTRYAG	1 cut(s)	455
BisI	GCNGC	2 cut(s)	390, 455
BlsI	GCNGC	2 cut(s)	391, 456
Bme18I	GGWCC	1 cut(s)	534
BmgT120I	GGNCC	1 cut(s)	534
BmiI	GGNNCC	1 cut(s)	536
BmrI	ACTGGG	1 cut(s)	56
BmsI	GCATC	3 cut(s)	207, 238, 501
BmuI	ACTGGG	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	231
Bse1I	ACTGG	3 cut(s)	62, 160, 575
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	516
BseMII	CTCAG	3 cut(s)	177, 327, 456
BseNI	ACTGG	3 cut(s)	62, 160, 575
BseXI	GCAGC	2 cut(s)	376, 441
BslFI	GGGAC	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	583
BsmFI	GGGAC	1 cut(s)	44
Bsp143I	GATC	1 cut(s)	169
BspCNI	CTCAG	3 cut(s)	178, 328, 457
BspHI	TCATGA	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	536
BspMAI	CTGCAG	1 cut(s)	459
BspPI	GGATC	1 cut(s)	177
BspQI	GCTCTTC	1 cut(s)	261
BsrI	ACTGG	3 cut(s)	62, 160, 575
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	1 cut(s)	169
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	439
Bst6I	CTCTTC	1 cut(s)	261
BstACI	GRCGYC	1 cut(s)	57
BstDEI	CTNAG	4 cut(s)	186, 336, 421, 465
BstF5I	GGATG	1 cut(s)	516
BstHHI	GCGC	1 cut(s)	394
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	1 cut(s)	583
BstMBI	GATC	1 cut(s)	169
BstNSI	RCATGY	2 cut(s)	180, 224
BstSFI	CTRYAG	1 cut(s)	455
BstV1I	GCAGC	2 cut(s)	376, 441
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	516
CciI	TCATGA	1 cut(s)	19
CfoI	GCGC	1 cut(s)	394
Cfr13I	GGNCC	1 cut(s)	534
CviAII	CATG	5 cut(s)	20, 115, 177, 221, 543
CviJI	RGCY	6 cut(s)	299, 365, 389, 400, 454, 571
CviKI_1	RGCY	6 cut(s)	299, 365, 389, 400, 454, 571
DdeI	CTNAG	4 cut(s)	186, 336, 421, 465
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	534
Eco57I	CTGAAG	1 cut(s)	542
EcoO109I	RGGNCCY	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	231
EcoT22I	ATGCAT	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	5 cut(s)	23, 118, 180, 224, 546
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	5 cut(s)	19, 114, 176, 220, 542
Fnu4HI	GCNGC	2 cut(s)	390, 455
FokI	GGATG	1 cut(s)	523
Fsp4HI	GCNGC	2 cut(s)	390, 455
FspBI	CTAG	2 cut(s)	173, 302
FspI	TGCGCA	1 cut(s)	393
GlaI	GCGC	1 cut(s)	393
GluI	GCNGC	2 cut(s)	390, 455
GsuI	CTGGAG	1 cut(s)	177
HhaI	GCGC	1 cut(s)	394
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	5 cut(s)	23, 118, 180, 224, 546
Hin6I	GCGC	1 cut(s)	392
HinP1I	GCGC	1 cut(s)	392
HinfI	GANTC	3 cut(s)	71, 332, 461
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188I	TCNGA	5 cut(s)	187, 337, 466, 502, 522
Hpy188III	TCNNGA	7 cut(s)	20, 92, 292, 302, 321, 508, 529
Hpy8I	GTNNAC	1 cut(s)	309
Hpy99I	CGWCG	1 cut(s)	554
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	4 cut(s)	220, 457, 487, 514
HpyF3I	CTNAG	4 cut(s)	186, 336, 421, 465
HpySE526I	ACGT	1 cut(s)	57
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	5 cut(s)	23, 118, 180, 224, 546
HspAI	GCGC	1 cut(s)	392
Kzo9I	GATC	1 cut(s)	169
LguI	GCTCTTC	1 cut(s)	261
LpnPI	CCDG	8 cut(s)	75, 125, 141, 306, 443, 493, 542, 588
Lsp1109I	GCAGC	2 cut(s)	376, 441
LweI	GCATC	3 cut(s)	207, 238, 501
MaeI	CTAG	2 cut(s)	173, 302
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	4 cut(s)	137, 278, 458, 569
MflI	RGATCY	1 cut(s)	169
MluCI	AATT	7 cut(s)	75, 128, 199, 204, 347, 381, 562
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	3 cut(s)	139, 331, 525
Mph1103I	ATGCAT	1 cut(s)	222
MseI	TTAA	3 cut(s)	48, 198, 203
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	5 cut(s)	23, 118, 180, 224, 546
NlaIV	GGNNCC	1 cut(s)	536
NmuCI	GTSAC	1 cut(s)	239
NsbI	TGCGCA	1 cut(s)	393
NsiI	ATGCAT	1 cut(s)	222
NspI	RCATGY	2 cut(s)	180, 224
PagI	TCATGA	1 cut(s)	19
PciSI	GCTCTTC	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	71, 461
PkrI	GCNGC	2 cut(s)	391, 456
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
PpuMI	RGGWCCY	1 cut(s)	534
PsiI	TTATAA	1 cut(s)	152
Psp5II	RGGWCCY	1 cut(s)	534
PspN4I	GGNNCC	1 cut(s)	536
PspPI	GGNCC	1 cut(s)	534
PspPPI	RGGWCCY	1 cut(s)	534
PstI	CTGCAG	1 cut(s)	459
PsuI	RGATCY	1 cut(s)	169
SapI	GCTCTTC	1 cut(s)	261
SaqAI	TTAA	3 cut(s)	48, 198, 203
SatI	GCNGC	2 cut(s)	390, 455
Sau3AI	GATC	1 cut(s)	169
Sau96I	GGNCC	1 cut(s)	534
SchI	GAGTC	1 cut(s)	326
SfaNI	GCATC	3 cut(s)	207, 238, 501
SfcI	CTRYAG	1 cut(s)	455
SinI	GGWCC	1 cut(s)	534
Sse9I	AATT	7 cut(s)	75, 128, 199, 204, 347, 381, 562
SspI	AATATT	2 cut(s)	52, 327
SspMI	CTAG	2 cut(s)	173, 302
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	439
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	1 cut(s)	291
TasI	AATT	7 cut(s)	75, 128, 199, 204, 347, 381, 562
TfiI	GAWTC	2 cut(s)	71, 461
Tru1I	TTAA	3 cut(s)	48, 198, 203
Tru9I	TTAA	3 cut(s)	48, 198, 203
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	2 cut(s)	389, 454
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	4 cut(s)	36, 93, 279, 531
TspGWI	ACGGA	1 cut(s)	567
VpaK11BI	GGWCC	1 cut(s)	534
XbaI	TCTAGA	1 cut(s)	301
XceI	RCATGY	2 cut(s)	180, 224
XspI	CTAG	2 cut(s)	173, 302
ZraI	GACGTC	1 cut(s)	58
Zsp2I	ATGCAT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.